Wall clock time and date at job start Sat Apr 11 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81407 * 103.00062 * 2 1 4 4 H 1.09005 * 109.46902 * 305.00092 * 3 2 1 5 5 C 1.53002 * 109.46784 * 64.99888 * 3 2 1 6 6 O 1.42909 * 109.46697 * 175.00268 * 5 3 2 7 7 C 1.52996 * 109.47270 * 185.00136 * 3 2 1 8 8 H 1.09003 * 109.46922 * 304.99587 * 7 3 2 9 9 C 1.52995 * 109.47151 * 65.00025 * 7 3 2 10 10 N 1.46493 * 109.47084 * 184.99863 * 7 3 2 11 11 C 1.34783 * 120.00266 * 154.99728 * 10 7 3 12 12 O 1.21554 * 119.99505 * 0.02562 * 11 10 7 13 13 C 1.47857 * 120.00551 * 180.02562 * 11 10 7 14 14 C 1.39674 * 120.09834 * 0.02598 * 13 11 10 15 15 C 1.38046 * 120.04015 * 179.97438 * 14 13 11 16 16 C 1.38176 * 120.23908 * 359.76355 * 15 14 13 17 17 C 1.39179 * 120.20513 * 0.51284 * 16 15 14 18 18 S 1.76194 * 120.02163 * 179.73865 * 17 16 15 19 19 C 1.76196 * 100.00182 * 265.25136 * 18 17 16 20 20 H 1.08000 * 120.00393 * 5.12593 * 19 18 17 21 21 C 1.38736 * 120.00006 * 185.12109 * 19 18 17 22 22 N 1.31616 * 119.99932 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99686 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47166 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46857 * 120.00071 * 23 21 19 26 26 H 1.48498 * 109.46876 * 239.99864 * 23 21 19 27 27 C 1.38875 * 119.95687 * 359.47003 * 17 16 15 28 28 H 1.08995 * 109.47440 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47483 * 299.99977 * 1 2 3 30 30 H 1.09000 * 109.47671 * 59.99835 * 1 2 3 31 31 H 1.09001 * 109.47432 * 295.00087 * 5 3 2 32 32 H 1.08997 * 109.47343 * 55.00680 * 5 3 2 33 33 H 0.96702 * 113.99648 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.46945 * 300.00125 * 9 7 3 35 35 H 1.09003 * 109.47565 * 59.99956 * 9 7 3 36 36 H 1.08999 * 109.47204 * 180.02562 * 9 7 3 37 37 H 0.97000 * 120.00523 * 335.00431 * 10 7 3 38 38 H 1.08002 * 119.98410 * 359.97438 * 14 13 11 39 39 H 1.07996 * 119.87866 * 180.02562 * 15 14 13 40 40 H 1.08006 * 119.89861 * 180.27092 * 16 15 14 41 41 H 0.97004 * 119.99833 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.12505 * 180.25503 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 -0.8419 5 6 1.7427 2.4016 1.3074 6 8 2.1660 3.7656 1.3585 7 6 3.7369 1.9413 -0.1258 8 1 4.2338 1.3805 0.6659 9 6 4.1987 1.4193 -1.4877 10 7 4.0772 3.3611 -0.0060 11 6 5.3044 3.7268 0.4146 12 8 6.1288 2.8785 0.6942 13 6 5.6477 5.1599 0.5360 14 6 4.7018 6.1364 0.2159 15 6 5.0235 7.4739 0.3302 16 6 6.2788 7.8530 0.7657 17 6 7.2310 6.8884 1.0820 18 16 8.8326 7.3773 1.6303 19 6 9.7054 7.3369 0.1002 20 1 9.1747 7.1384 -0.8192 21 6 11.0744 7.5602 0.0765 22 7 11.7212 7.8027 1.1969 23 14 11.9996 7.5181 -1.5458 24 1 11.0499 7.2279 -2.6499 25 1 12.6460 8.8342 -1.7812 26 1 13.0385 6.4583 -1.4958 27 6 6.9163 5.5404 0.9704 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.6547 2.3568 1.3555 32 1 2.1664 1.8578 2.1517 33 1 1.8968 4.2310 2.1623 34 1 3.9455 0.3628 -1.5768 35 1 3.7018 1.9800 -2.2794 36 1 5.2780 1.5426 -1.5771 37 1 3.4194 4.0381 -0.2293 38 1 3.7180 5.8449 -0.1213 39 1 4.2899 8.2268 0.0823 40 1 6.5232 8.9010 0.8573 41 1 12.6785 7.9585 1.1803 42 1 7.6518 4.7897 1.2190 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126766156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:54 Heat of formation + Delta-G solvation = -60.460144 kcal Electronic energy + Delta-G solvation = -24584.651360 eV Core-core repulsion = 20975.188244 eV Total energy + Delta-G solvation = -3609.463116 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04935 -38.25903 -37.37961 -35.43402 -32.47476 -32.39729 -30.65600 -30.40774 -29.69825 -28.72975 -25.53443 -24.32643 -23.37859 -22.28295 -21.23936 -20.32578 -18.50716 -17.82399 -17.28813 -16.71994 -16.16450 -15.76583 -15.45719 -15.05513 -14.84015 -14.81513 -14.51916 -14.34133 -14.05637 -13.92631 -13.71520 -13.32584 -13.01000 -12.98827 -12.89608 -12.56090 -12.26347 -12.10678 -11.63756 -11.51825 -11.25819 -11.10149 -11.08277 -11.03059 -10.65646 -10.64202 -10.33499 -9.89826 -9.62400 -9.13348 -8.99486 -8.90759 -8.49072 -8.19221 -7.96219 -6.66949 -6.25261 -3.98561 1.00688 1.27720 1.74747 1.96495 3.14521 3.22442 3.27716 3.31298 3.36071 3.54415 3.80820 4.04598 4.15316 4.32848 4.53506 4.60885 4.63901 4.68346 4.88559 5.02077 5.09344 5.11204 5.19359 5.21973 5.25658 5.33415 5.35059 5.51821 5.64655 5.77396 5.86642 5.95521 6.09241 6.12068 6.33646 6.56594 6.69392 6.72400 7.00776 7.18035 7.27728 7.61439 7.74433 8.36741 8.48281 9.20775 10.81511 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.002465 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.093381 B =11357.404116 C =12118.567323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.214 6.214 3 C -0.073 4.073 4 H 0.098 0.902 5 C 0.084 3.916 6 O -0.562 6.562 7 C 0.170 3.830 8 H 0.094 0.906 9 C -0.167 4.167 10 N -0.702 5.702 11 C 0.566 3.434 12 O -0.542 6.542 13 C -0.149 4.149 14 C -0.085 4.085 15 C -0.144 4.144 16 C -0.057 4.057 17 C -0.108 4.108 18 S -0.037 6.037 19 C -0.517 4.517 20 H 0.076 0.924 21 C 0.072 3.928 22 N -0.870 5.870 23 Si 0.921 3.079 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.279 1.279 27 C -0.021 4.021 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.382 0.618 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.405 0.595 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.269 0.731 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.295 -10.546 -2.128 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.012 5.988 3 C -0.203 4.203 4 H 0.117 0.883 5 C 0.004 3.996 6 O -0.369 6.369 7 C 0.064 3.936 8 H 0.112 0.888 9 C -0.225 4.225 10 N -0.358 5.358 11 C 0.354 3.646 12 O -0.420 6.420 13 C -0.154 4.154 14 C -0.104 4.104 15 C -0.163 4.163 16 C -0.078 4.078 17 C -0.218 4.218 18 S 0.197 5.803 19 C -0.665 4.665 20 H 0.094 0.906 21 C -0.137 4.137 22 N -0.506 5.506 23 Si 0.747 3.253 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.204 1.204 27 C -0.042 4.042 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.231 0.769 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.245 0.755 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.078 0.922 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.189 -11.877 -1.362 26.982 hybrid contribution -1.472 1.096 -1.774 2.552 sum -25.661 -10.781 -3.136 28.009 Atomic orbital electron populations 1.23500 0.94618 1.06827 1.05104 1.87095 1.06669 1.07323 1.97667 1.23570 1.00583 0.95128 1.00978 0.88344 1.22442 0.97309 0.83564 0.96303 1.86418 1.80768 1.23441 1.46272 1.20435 0.90029 0.83662 0.99462 0.88821 1.22284 1.02744 1.01632 0.95855 1.45829 1.14447 1.06973 1.68509 1.18357 0.81514 0.88651 0.76086 1.90762 1.48761 1.52498 1.49996 1.19851 0.96167 0.91982 1.07405 1.21162 0.97879 0.92908 0.98456 1.21046 0.97150 0.95566 1.02582 1.21927 0.92317 0.99867 0.93725 1.22813 1.02613 0.94420 1.01992 1.83578 0.94461 1.86983 1.15261 1.22879 0.94974 1.56090 0.92513 0.90593 1.25007 0.96425 0.94494 0.97735 1.69999 1.09350 1.45197 1.26055 0.86070 0.79375 0.77911 0.81965 1.19504 1.20517 1.20448 1.21939 0.94222 0.96078 0.91995 0.87720 0.90399 0.90250 0.93633 0.92128 0.76906 0.90758 0.92421 0.91321 0.75548 0.86322 0.86062 0.85245 0.92157 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.59 10.47 101.05 1.06 0.47 16 2 S -0.21 -1.64 20.60 -107.50 -2.21 -3.86 16 3 C -0.07 -0.58 2.35 -26.73 -0.06 -0.64 16 4 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 5 C 0.08 0.57 6.38 37.16 0.24 0.81 16 6 O -0.56 -4.07 10.20 -35.23 -0.36 -4.43 16 7 C 0.17 1.89 2.15 -67.94 -0.15 1.74 16 8 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 9 C -0.17 -1.82 9.31 37.15 0.35 -1.47 16 10 N -0.70 -8.65 3.49 -54.75 -0.19 -8.84 16 11 C 0.57 9.49 7.74 -12.32 -0.10 9.40 16 12 O -0.54 -11.10 16.01 5.32 0.09 -11.02 16 13 C -0.15 -2.59 5.87 -105.00 -0.62 -3.21 16 14 C -0.08 -1.20 9.54 -39.12 -0.37 -1.58 16 15 C -0.14 -2.11 10.02 -39.67 -0.40 -2.50 16 16 C -0.06 -1.04 9.79 -39.25 -0.38 -1.43 16 17 C -0.11 -2.35 5.45 -39.00 -0.21 -2.56 16 18 S -0.04 -0.98 21.40 -107.50 -2.30 -3.28 16 19 C -0.52 -14.82 9.46 30.92 0.29 -14.53 16 20 H 0.08 2.17 7.79 -52.49 -0.41 1.76 16 21 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 22 N -0.87 -25.76 13.22 55.49 0.73 -25.03 16 23 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C -0.02 -0.43 9.34 -38.92 -0.36 -0.80 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.28 7.29 -51.92 -0.38 -0.10 16 30 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.05 0.23 7.15 -51.93 -0.37 -0.14 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.38 1.55 9.12 45.56 0.42 1.96 16 34 H 0.07 0.73 7.13 -51.93 -0.37 0.36 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.41 4.25 4.93 -40.82 -0.20 4.05 16 38 H 0.12 1.27 6.40 -52.49 -0.34 0.93 16 39 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 40 H 0.13 2.25 8.06 -52.48 -0.42 1.82 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.14 3.13 7.65 -52.49 -0.40 2.73 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -34.00 377.49 -9.36 -43.36 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.96 Total: 4.98 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.82 Total: -14.33 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.54 Total: -33.87 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.27 Total: -15.45 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -4.52 Total: -7.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.00 -9.36 -43.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126766156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.102 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds