Wall clock time and date at job start Sat Apr 11 2020 06:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81407 * 103.00062 * 2 1 4 4 H 1.09005 * 109.46902 * 305.00092 * 3 2 1 5 5 C 1.53002 * 109.46784 * 64.99888 * 3 2 1 6 6 O 1.42909 * 109.46697 * 175.00268 * 5 3 2 7 7 C 1.52996 * 109.47270 * 185.00136 * 3 2 1 8 8 H 1.09003 * 109.46922 * 304.99587 * 7 3 2 9 9 C 1.52995 * 109.47151 * 65.00025 * 7 3 2 10 10 N 1.46493 * 109.47084 * 184.99863 * 7 3 2 11 11 C 1.34783 * 120.00266 * 154.99728 * 10 7 3 12 12 O 1.21554 * 119.99505 * 0.02562 * 11 10 7 13 13 C 1.47857 * 120.00551 * 180.02562 * 11 10 7 14 14 C 1.39674 * 120.09834 * 0.02598 * 13 11 10 15 15 C 1.38046 * 120.04015 * 179.97438 * 14 13 11 16 16 C 1.38176 * 120.23908 * 359.76355 * 15 14 13 17 17 C 1.39179 * 120.20513 * 0.51284 * 16 15 14 18 18 S 1.76194 * 120.02163 * 179.73865 * 17 16 15 19 19 C 1.76196 * 100.00182 * 265.25136 * 18 17 16 20 20 H 1.08000 * 120.00393 * 5.12593 * 19 18 17 21 21 C 1.38736 * 120.00006 * 185.12109 * 19 18 17 22 22 N 1.31616 * 119.99932 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99686 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47166 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46857 * 120.00071 * 23 21 19 26 26 H 1.48498 * 109.46876 * 239.99864 * 23 21 19 27 27 C 1.38875 * 119.95687 * 359.47003 * 17 16 15 28 28 H 1.08995 * 109.47440 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47483 * 299.99977 * 1 2 3 30 30 H 1.09000 * 109.47671 * 59.99835 * 1 2 3 31 31 H 1.09001 * 109.47432 * 295.00087 * 5 3 2 32 32 H 1.08997 * 109.47343 * 55.00680 * 5 3 2 33 33 H 0.96702 * 113.99648 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.46945 * 300.00125 * 9 7 3 35 35 H 1.09003 * 109.47565 * 59.99956 * 9 7 3 36 36 H 1.08999 * 109.47204 * 180.02562 * 9 7 3 37 37 H 0.97000 * 120.00523 * 335.00431 * 10 7 3 38 38 H 1.08002 * 119.98410 * 359.97438 * 14 13 11 39 39 H 1.07996 * 119.87866 * 180.02562 * 15 14 13 40 40 H 1.08006 * 119.89861 * 180.27092 * 16 15 14 41 41 H 0.97004 * 119.99833 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.12505 * 180.25503 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 -0.8419 5 6 1.7427 2.4016 1.3074 6 8 2.1660 3.7656 1.3585 7 6 3.7369 1.9413 -0.1258 8 1 4.2338 1.3805 0.6659 9 6 4.1987 1.4193 -1.4877 10 7 4.0772 3.3611 -0.0060 11 6 5.3044 3.7268 0.4146 12 8 6.1288 2.8785 0.6942 13 6 5.6477 5.1599 0.5360 14 6 4.7018 6.1364 0.2159 15 6 5.0235 7.4739 0.3302 16 6 6.2788 7.8530 0.7657 17 6 7.2310 6.8884 1.0820 18 16 8.8326 7.3773 1.6303 19 6 9.7054 7.3369 0.1002 20 1 9.1747 7.1384 -0.8192 21 6 11.0744 7.5602 0.0765 22 7 11.7212 7.8027 1.1969 23 14 11.9996 7.5181 -1.5458 24 1 11.0499 7.2279 -2.6499 25 1 12.6460 8.8342 -1.7812 26 1 13.0385 6.4583 -1.4958 27 6 6.9163 5.5404 0.9704 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.6547 2.3568 1.3555 32 1 2.1664 1.8578 2.1517 33 1 1.8968 4.2310 2.1623 34 1 3.9455 0.3628 -1.5768 35 1 3.7018 1.9800 -2.2794 36 1 5.2780 1.5426 -1.5771 37 1 3.4194 4.0381 -0.2293 38 1 3.7180 5.8449 -0.1213 39 1 4.2899 8.2268 0.0823 40 1 6.5232 8.9010 0.8573 41 1 12.6785 7.9585 1.1803 42 1 7.6518 4.7897 1.2190 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126766156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:52 Heat of formation + Delta-G solvation = -83.778314 kcal Electronic energy + Delta-G solvation = -24585.662512 eV Core-core repulsion = 20975.188244 eV Total energy + Delta-G solvation = -3610.474268 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.30676 -39.41190 -38.36021 -36.32675 -34.65549 -33.53912 -31.95047 -31.58650 -30.46973 -29.25236 -27.74651 -25.44545 -24.28477 -23.64791 -22.23736 -21.57062 -20.04468 -19.12148 -18.44102 -17.65026 -17.05600 -16.93884 -16.80802 -16.62784 -16.25644 -15.68532 -15.66099 -15.58335 -15.22372 -14.77604 -14.58688 -14.46629 -14.32303 -13.93841 -13.71116 -13.66461 -13.26862 -13.12817 -13.05652 -12.99145 -12.98436 -12.63952 -12.37890 -12.34121 -12.05068 -11.72222 -11.26251 -11.19561 -11.00457 -10.85427 -10.72090 -10.14384 -9.83160 -9.65969 -8.79887 -8.75905 -8.39443 -6.19065 -0.12889 0.28847 0.44838 1.29339 1.35874 1.46247 1.51367 1.67163 1.87413 2.21447 2.28920 2.85179 2.93366 3.26381 3.35862 3.42409 3.73926 3.97443 3.98364 4.05058 4.09878 4.26076 4.32396 4.35775 4.37490 4.40750 4.51188 4.52188 4.68839 4.72284 4.75284 4.92159 4.93769 4.96361 5.20025 5.28676 5.35473 5.39403 5.47658 5.53868 5.90345 6.15922 6.59723 6.85971 7.00910 7.27323 8.67814 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.002465 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.093381 B =11357.404116 C =12118.567323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.260 6.260 3 C -0.060 4.060 4 H 0.116 0.884 5 C 0.087 3.913 6 O -0.577 6.577 7 C 0.168 3.832 8 H 0.064 0.936 9 C -0.161 4.161 10 N -0.675 5.675 11 C 0.563 3.437 12 O -0.591 6.591 13 C -0.151 4.151 14 C -0.056 4.056 15 C -0.121 4.121 16 C -0.064 4.064 17 C -0.129 4.129 18 S -0.096 6.096 19 C -0.534 4.534 20 H 0.066 0.934 21 C 0.018 3.982 22 N -0.906 5.906 23 Si 0.993 3.007 24 H -0.267 1.267 25 H -0.264 1.264 26 H -0.273 1.273 27 C -0.047 4.047 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.398 0.602 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.419 0.581 38 H 0.170 0.830 39 H 0.175 0.825 40 H 0.135 0.865 41 H 0.274 0.726 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.695 -9.935 -4.233 32.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.034 6.034 3 C -0.189 4.189 4 H 0.134 0.866 5 C 0.007 3.993 6 O -0.387 6.387 7 C 0.062 3.938 8 H 0.082 0.918 9 C -0.220 4.220 10 N -0.329 5.329 11 C 0.351 3.649 12 O -0.473 6.473 13 C -0.156 4.156 14 C -0.075 4.075 15 C -0.140 4.140 16 C -0.085 4.085 17 C -0.240 4.240 18 S 0.138 5.862 19 C -0.681 4.681 20 H 0.084 0.916 21 C -0.187 4.187 22 N -0.542 5.542 23 Si 0.814 3.186 24 H -0.191 1.191 25 H -0.189 1.189 26 H -0.198 1.198 27 C -0.069 4.069 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.249 0.751 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.261 0.739 38 H 0.187 0.813 39 H 0.193 0.807 40 H 0.153 0.847 41 H 0.083 0.917 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -28.652 -11.249 -3.461 30.975 hybrid contribution -0.336 0.825 -1.095 1.412 sum -28.988 -10.424 -4.556 31.140 Atomic orbital electron populations 1.23568 0.90952 1.07842 1.06333 1.87330 1.10672 1.07557 1.97817 1.23404 0.97610 0.95447 1.02431 0.86620 1.22415 0.98757 0.83197 0.94968 1.86304 1.81282 1.23547 1.47518 1.20479 0.92568 0.82195 0.98558 0.91804 1.22221 1.00769 1.02684 0.96283 1.45620 1.12906 1.08115 1.66300 1.18370 0.82388 0.88049 0.76137 1.90746 1.50541 1.53584 1.52432 1.19933 0.95346 0.93301 1.07046 1.21662 0.98711 0.91898 0.95223 1.21539 0.96046 0.96878 0.99533 1.22053 0.93225 0.99352 0.93832 1.22468 1.00541 0.95542 1.05475 1.83451 0.98889 1.87588 1.16245 1.23086 0.95827 1.56353 0.92855 0.91577 1.26018 0.97224 0.93776 1.01669 1.70114 1.09848 1.45941 1.28344 0.84993 0.77842 0.78591 0.77128 1.19079 1.18889 1.19797 1.21603 0.95633 0.95014 0.94668 0.86838 0.89110 0.89011 0.90828 0.93574 0.75073 0.89841 0.90559 0.94493 0.73923 0.81274 0.80740 0.84731 0.91708 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.47 113.37 1.19 0.54 16 2 S -0.26 -3.52 20.60 -56.49 -1.16 -4.68 16 3 C -0.06 -0.79 2.35 30.59 0.07 -0.72 16 4 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 5 C 0.09 0.91 6.38 71.98 0.46 1.37 16 6 O -0.58 -6.14 10.20 -148.98 -1.52 -7.66 16 7 C 0.17 3.57 2.15 44.99 0.10 3.67 16 8 H 0.06 1.78 7.58 -2.39 -0.02 1.77 16 9 C -0.16 -3.42 9.31 71.98 0.67 -2.75 16 10 N -0.67 -15.38 3.49 -445.41 -1.56 -16.94 16 11 C 0.56 18.95 7.74 86.79 0.67 19.62 16 12 O -0.59 -25.70 16.01 -3.89 -0.06 -25.77 16 13 C -0.15 -5.17 5.87 -20.11 -0.12 -5.28 16 14 C -0.06 -1.36 9.54 22.57 0.22 -1.14 16 15 C -0.12 -2.98 10.02 22.21 0.22 -2.76 16 16 C -0.06 -2.25 9.79 22.48 0.22 -2.03 16 17 C -0.13 -5.85 5.45 22.65 0.12 -5.73 16 18 S -0.10 -5.39 21.40 -56.49 -1.21 -6.60 16 19 C -0.53 -32.04 9.46 67.94 0.64 -31.39 16 20 H 0.07 3.95 7.79 -2.91 -0.02 3.92 16 21 C 0.02 1.07 5.49 84.84 0.47 1.53 16 22 N -0.91 -55.55 13.22 21.64 0.29 -55.26 16 23 Si 0.99 45.61 29.55 68.60 2.03 47.63 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 27 C -0.05 -2.09 9.34 22.70 0.21 -1.87 16 28 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.09 0.29 7.29 -2.39 -0.02 0.28 16 30 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.07 0.40 7.15 -2.39 -0.02 0.39 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.40 1.67 9.12 -74.06 -0.68 1.00 16 34 H 0.08 1.61 7.13 -2.38 -0.02 1.59 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.42 7.06 4.93 -92.71 -0.46 6.60 16 38 H 0.17 2.43 6.40 -2.91 -0.02 2.41 16 39 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.10 5.01 7.65 -2.91 -0.02 4.99 16 Total: -1.00 -81.89 377.49 1.86 -80.03 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -0.08 Total: 16.18 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 5.14 Total: -26.94 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -1.27 Total: -72.20 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -1.58 Total: -33.42 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -2.37 Total: -11.28 kcal Total: -81.89 1.86 -80.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126766156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.751 kcal (2) G-P(sol) polarization free energy of solvation -81.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds