Wall clock time and date at job start Sat Apr 11 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46453 * 2 1 4 4 C 1.50697 * 109.47434 * 239.99512 * 2 1 3 5 5 H 1.07998 * 120.00045 * 239.99661 * 4 2 1 6 6 C 1.37884 * 119.99827 * 60.00019 * 4 2 1 7 7 N 1.31508 * 119.99952 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99604 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46809 * 90.00315 * 8 6 4 10 10 H 1.48504 * 109.47088 * 209.99685 * 8 6 4 11 11 H 1.48491 * 109.47582 * 329.99870 * 8 6 4 12 12 N 1.46900 * 109.46905 * 119.99173 * 2 1 3 13 13 C 1.46902 * 110.99886 * 176.04956 * 12 2 1 14 14 C 1.46899 * 111.00441 * 300.00344 * 12 2 1 15 15 C 1.50695 * 109.47109 * 170.00002 * 14 12 2 16 16 O 1.21284 * 120.00092 * 359.97438 * 15 14 12 17 17 N 1.34780 * 119.99885 * 180.27757 * 15 14 12 18 18 C 1.39967 * 120.00243 * 174.45470 * 17 15 14 19 19 C 1.38888 * 120.06162 * 146.82007 * 18 17 15 20 20 C 1.38084 * 119.94581 * 180.02562 * 19 18 17 21 21 C 1.38412 * 120.05632 * 0.02562 * 20 19 18 22 22 Cl 1.73596 * 119.94074 * 179.97438 * 21 20 19 23 23 C 1.38363 * 120.11184 * 359.97364 * 21 20 19 24 24 N 1.48015 * 119.96752 * 180.02562 * 23 21 20 25 25 O 1.21800 * 119.99992 * 180.02562 * 24 23 21 26 26 O 1.21804 * 120.00186 * 359.97438 * 24 23 21 27 27 C 1.38122 * 120.06028 * 359.77322 * 23 21 20 28 28 H 1.09004 * 109.46453 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47500 * 300.00485 * 1 2 3 30 30 H 1.09000 * 109.47102 * 60.00952 * 1 2 3 31 31 H 0.97001 * 120.00005 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47146 * 183.95762 * 13 12 2 33 33 H 1.09006 * 109.46967 * 303.95834 * 13 12 2 34 34 H 1.09006 * 109.47151 * 63.95324 * 13 12 2 35 35 H 1.08996 * 109.46680 * 49.99769 * 14 12 2 36 36 H 1.09004 * 109.47312 * 290.00290 * 14 12 2 37 37 H 0.97007 * 119.99988 * 354.44656 * 17 15 14 38 38 H 1.08003 * 120.02523 * 0.02747 * 19 18 17 39 39 H 1.08002 * 119.97453 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.03301 * 180.27968 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8294 -2.6035 8 14 2.3227 -1.1198 -4.0078 9 1 1.3450 -2.1619 -4.4122 10 1 2.4875 -0.1406 -5.1120 11 1 3.6310 -1.7567 -3.7118 12 7 2.0196 -0.6923 1.1995 13 6 3.4851 -0.7943 1.1872 14 6 1.5486 -0.0262 2.4211 15 6 1.8579 -0.8908 3.6160 16 8 2.4154 -1.9572 3.4648 17 7 1.5095 -0.4818 4.8520 18 6 1.6908 -1.3332 5.9480 19 6 2.0097 -0.8065 7.1930 20 6 2.1886 -1.6487 8.2725 21 6 2.0509 -3.0169 8.1146 22 17 2.2771 -4.0730 9.4736 23 6 1.7332 -3.5442 6.8754 24 7 1.5862 -5.0077 6.7103 25 8 1.3071 -5.4725 5.6197 26 8 1.7453 -5.7474 7.6649 27 6 1.5481 -2.7057 5.7936 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 0.7082 1.1606 -3.4845 32 1 3.8164 -1.3719 2.0502 33 1 3.8070 -1.2914 0.2720 34 1 3.9192 0.2047 1.2301 35 1 0.4722 0.1326 2.3563 36 1 2.0517 0.9349 2.5280 37 1 1.1331 0.4028 4.9821 38 1 2.1176 0.2610 7.3166 39 1 2.4362 -1.2396 9.2409 40 1 1.2958 -3.1174 4.8275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129556661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:06 Heat of formation + Delta-G solvation = 15.125577 kcal Electronic energy + Delta-G solvation = -26954.852710 eV Core-core repulsion = 22800.330316 eV Total energy + Delta-G solvation = -4154.522394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.31533 -40.93802 -39.19402 -37.25472 -36.63709 -36.53658 -35.05405 -32.85167 -32.41805 -30.65785 -29.30519 -28.00284 -26.85772 -25.05669 -24.03707 -23.43466 -22.62543 -20.92067 -19.85925 -19.40727 -18.71679 -17.66681 -17.44261 -17.36197 -16.89597 -16.38499 -15.97883 -15.55692 -14.92254 -14.59981 -14.27655 -14.16904 -13.86119 -13.77827 -13.31978 -12.83611 -12.68368 -12.53659 -12.28800 -12.28397 -11.79618 -11.45625 -11.26678 -11.16863 -11.08177 -10.95564 -10.76129 -10.70676 -10.62107 -10.31822 -10.26297 -10.09707 -10.02822 -9.59794 -8.99698 -8.74349 -8.49126 -7.35108 -6.09070 -4.13028 -0.50212 0.32590 1.04834 1.08662 1.47477 2.34794 2.56907 2.86575 3.28827 3.35216 3.39287 3.80306 4.17175 4.21912 4.31379 4.36496 4.67058 4.84491 4.88290 5.06514 5.22299 5.23977 5.38377 5.51791 5.52605 5.60866 6.06922 6.18617 6.23461 6.31317 6.65165 6.77940 6.89275 6.95050 7.02222 7.35432 7.53759 7.54862 7.75359 7.94243 8.06755 8.18900 8.44984 8.93139 9.52404 10.98034 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.022022 B = 0.002358 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.158675 B =11873.986210 C =12645.511090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.213 3.787 3 H 0.001 0.999 4 C -0.504 4.504 5 H 0.066 0.934 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.519 5.519 13 C 0.031 3.969 14 C 0.035 3.965 15 C 0.513 3.487 16 O -0.487 6.487 17 N -0.681 5.681 18 C 0.171 3.829 19 C -0.093 4.093 20 C -0.089 4.089 21 C -0.012 4.012 22 Cl -0.013 7.013 23 C -0.017 4.017 24 N 0.025 4.975 25 O -0.150 6.150 26 O -0.140 6.140 27 C -0.054 4.054 28 H 0.038 0.962 29 H 0.006 0.994 30 H 0.088 0.912 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.006 0.994 35 H 0.111 0.889 36 H 0.057 0.943 37 H 0.418 0.582 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 1.415 24.235 24.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.108 3.892 3 H 0.018 0.982 4 C -0.542 4.542 5 H 0.084 0.916 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.245 5.245 13 C -0.117 4.117 14 C -0.097 4.097 15 C 0.301 3.699 16 O -0.358 6.358 17 N -0.329 5.329 18 C 0.074 3.926 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.041 4.041 22 Cl 0.017 6.983 23 C -0.102 4.102 24 N 0.547 4.453 25 O -0.366 6.366 26 O -0.359 6.359 27 C -0.075 4.075 28 H 0.057 0.943 29 H 0.025 0.975 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.025 0.975 35 H 0.129 0.871 36 H 0.075 0.925 37 H 0.255 0.745 38 H 0.172 0.828 39 H 0.177 0.823 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.576 0.918 24.002 24.027 hybrid contribution 0.380 0.498 -0.708 0.945 sum 0.956 1.417 23.295 23.357 Atomic orbital electron populations 1.21908 0.97636 0.99982 0.99896 1.19322 0.92358 0.92028 0.85507 0.98155 1.21127 1.31199 1.12415 0.89477 0.91595 1.24918 0.95130 0.95040 0.99082 1.69872 1.36909 1.23030 1.23571 0.86480 0.79359 0.79283 0.82223 1.20552 1.21333 1.19845 1.61927 1.10457 1.51715 1.00354 1.22393 0.87605 0.98624 1.03125 1.22042 1.03476 0.94409 0.89750 1.21602 0.77004 0.87907 0.83349 1.90719 1.37863 1.22676 1.84519 1.43894 1.64627 1.18740 1.05589 1.17528 0.97567 0.89360 0.88186 1.21330 0.97487 1.01627 0.90923 1.20922 0.99999 0.89282 1.00658 1.20709 1.02195 0.92882 0.88353 1.98458 1.94509 1.64437 1.40924 1.20633 1.12908 0.81488 0.95131 1.43388 0.98458 1.02756 1.00719 1.94622 1.50141 1.78569 1.13229 1.94592 1.52863 1.56687 1.31713 1.21083 0.95130 0.91892 0.99428 0.94332 0.97503 0.89300 0.92907 0.92131 0.90097 0.97535 0.87100 0.92529 0.74487 0.82753 0.82295 0.80667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.76 37.16 0.33 -2.76 16 2 C 0.21 5.07 2.06 -68.86 -0.14 4.93 16 3 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 4 C -0.50 -13.43 7.88 -34.44 -0.27 -13.70 16 5 H 0.07 1.79 6.40 -52.49 -0.34 1.45 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -24.58 11.32 55.43 0.63 -23.96 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.52 -10.68 4.36 -237.72 -1.04 -11.72 16 13 C 0.03 0.61 8.93 60.07 0.54 1.15 16 14 C 0.03 0.53 5.27 -4.98 -0.03 0.50 16 15 C 0.51 7.09 7.29 -10.99 -0.08 7.01 16 16 O -0.49 -8.63 12.00 5.55 0.07 -8.57 16 17 N -0.68 -6.16 5.34 -9.86 -0.05 -6.21 16 18 C 0.17 1.60 6.28 -83.68 -0.53 1.07 16 19 C -0.09 -0.55 9.96 -39.40 -0.39 -0.95 16 20 C -0.09 -0.56 9.82 -39.57 -0.39 -0.95 16 21 C -0.01 -0.12 6.32 -39.47 -0.25 -0.37 16 22 Cl -0.01 -0.12 25.93 -51.86 -1.34 -1.47 16 23 C -0.02 -0.21 6.85 -79.94 -0.55 -0.76 16 24 N 0.03 0.38 4.45 33.96 0.15 0.53 16 25 O -0.15 -2.47 18.45 -29.46 -0.54 -3.01 16 26 O -0.14 -2.03 16.01 -29.46 -0.47 -2.50 16 27 C -0.05 -0.66 8.16 -39.40 -0.32 -0.98 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.01 0.12 6.20 -51.93 -0.32 -0.20 16 30 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.06 1.16 5.88 -51.93 -0.31 0.85 16 33 H 0.08 1.75 6.10 -51.93 -0.32 1.44 16 34 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 35 H 0.11 1.57 5.83 -51.93 -0.30 1.27 16 36 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.42 2.14 8.82 -40.82 -0.36 1.78 16 38 H 0.15 0.38 8.06 -52.48 -0.42 -0.05 16 39 H 0.16 0.52 8.06 -52.49 -0.42 0.09 16 40 H 0.18 2.60 5.97 -52.49 -0.31 2.29 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -32.05 349.86 -8.77 -40.82 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.24 Total: -0.92 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.18 Total: -4.28 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.31 Total: -41.36 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.95 Total: -14.09 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.34 Total: -1.47 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.05 -8.77 -40.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129556661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.942 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds