Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47126 * 2 1 4 4 C 1.50704 * 109.46984 * 240.00548 * 2 1 3 5 5 H 1.08000 * 119.99927 * 239.99062 * 4 2 1 6 6 C 1.37881 * 120.00275 * 59.99986 * 4 2 1 7 7 N 1.31517 * 119.99372 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00221 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47145 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47050 * 119.99427 * 8 6 4 11 11 H 1.48496 * 109.47033 * 239.99895 * 8 6 4 12 12 N 1.46896 * 109.47463 * 120.00260 * 2 1 3 13 13 C 1.46897 * 111.00051 * 58.95611 * 12 2 1 14 14 C 1.46900 * 111.00225 * 295.00072 * 12 2 1 15 15 C 1.50694 * 109.47260 * 189.99953 * 14 12 2 16 16 O 1.21291 * 120.00041 * 359.97438 * 15 14 12 17 17 N 1.34780 * 119.99967 * 180.02562 * 15 14 12 18 18 C 1.39983 * 119.99611 * 175.52214 * 17 15 14 19 19 C 1.38843 * 120.07776 * 34.67938 * 18 17 15 20 20 C 1.38121 * 119.94066 * 179.74099 * 19 18 17 21 21 C 1.38295 * 120.08965 * 0.51063 * 20 19 18 22 22 N 1.48024 * 119.92209 * 179.74336 * 21 20 19 23 23 O 1.21799 * 119.99786 * 180.02562 * 22 21 20 24 24 O 1.21806 * 119.99989 * 0.02562 * 22 21 20 25 25 C 1.38254 * 120.15150 * 359.76517 * 21 20 19 26 26 C 1.38226 * 120.05728 * 359.97438 * 25 21 20 27 27 Cl 1.73601 * 120.04791 * 179.97438 * 26 25 21 28 28 H 1.08999 * 109.46926 * 299.99494 * 1 2 3 29 29 H 1.08997 * 109.47131 * 60.00064 * 1 2 3 30 30 H 1.09002 * 109.46551 * 179.97438 * 1 2 3 31 31 H 0.97004 * 119.99341 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46889 * 59.99891 * 13 12 2 33 33 H 1.08994 * 109.47287 * 179.97438 * 13 12 2 34 34 H 1.09002 * 109.47133 * 300.00224 * 13 12 2 35 35 H 1.09004 * 109.46842 * 310.00158 * 14 12 2 36 36 H 1.09002 * 109.46860 * 69.99692 * 14 12 2 37 37 H 0.96992 * 120.00056 * 355.52049 * 17 15 14 38 38 H 1.08004 * 120.03050 * 0.02562 * 19 18 17 39 39 H 1.07997 * 119.95532 * 180.25484 * 20 19 18 40 40 H 1.08002 * 119.96913 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6534 -1.5883 -1.1316 6 6 1.6992 -0.2392 -2.4829 7 7 0.9427 0.8299 -2.6033 8 14 2.3213 -1.1200 -4.0081 9 1 3.1464 -2.2867 -3.6041 10 1 1.1659 -1.5864 -4.8162 11 1 3.1465 -0.1870 -4.8166 12 7 2.0198 -0.6925 1.1993 13 6 1.5285 -2.0761 1.2458 14 6 1.6488 0.0390 2.4180 15 6 2.3681 -0.5573 3.6004 16 8 3.1158 -1.4994 3.4434 17 7 2.1797 -0.0445 4.8325 18 6 2.7734 -0.6556 5.9432 19 6 4.0231 -1.2490 5.8257 20 6 4.6086 -1.8465 6.9247 21 6 3.9471 -1.8637 8.1391 22 7 4.5756 -2.5101 9.3131 23 8 3.9940 -2.5265 10.3832 24 8 5.6743 -3.0256 9.2091 25 6 2.7001 -1.2790 8.2589 26 6 2.1107 -0.6746 7.1644 27 17 0.5445 0.0589 7.3150 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 0.7081 1.1611 -3.4843 32 1 1.8764 -2.6150 0.3645 33 1 1.9062 -2.5659 2.1433 34 1 0.4386 -2.0743 1.2638 35 1 1.9298 1.0869 2.3125 36 1 0.5723 -0.0347 2.5726 37 1 1.6329 0.7480 4.9496 38 1 4.5390 -1.2393 4.8769 39 1 5.5825 -2.3045 6.8346 40 1 2.1859 -1.2946 9.2086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129626321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = 3.521199 kcal Electronic energy + Delta-G solvation = -26688.481574 eV Core-core repulsion = 22533.455976 eV Total energy + Delta-G solvation = -4155.025598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.46186 -41.08665 -39.24885 -37.21000 -36.98103 -36.81653 -35.29777 -32.85893 -31.74283 -31.35600 -29.30089 -27.88882 -26.36965 -25.29896 -24.26684 -23.95527 -22.69586 -20.94075 -19.79359 -19.54700 -18.93556 -18.27146 -17.79723 -17.42089 -16.26342 -16.16145 -15.90806 -15.47916 -14.95712 -14.73373 -14.49938 -14.33831 -14.14844 -13.85323 -13.38897 -12.93319 -12.68514 -12.47944 -12.31830 -11.87801 -11.79400 -11.74553 -11.45984 -11.39429 -11.29971 -11.23164 -10.99402 -10.94552 -10.86473 -10.59437 -10.25653 -10.10865 -9.81238 -9.61891 -9.02820 -9.00400 -8.49711 -7.37732 -6.12131 -4.15538 -0.56741 0.29266 0.91557 0.94966 1.43860 2.29283 2.42375 2.79252 3.24419 3.32853 3.37923 3.87253 4.08286 4.20280 4.24043 4.34210 4.60569 4.84271 4.87759 5.02823 5.19453 5.20924 5.31186 5.46813 5.54118 5.62423 5.93671 6.10599 6.16894 6.26532 6.51884 6.65238 6.78767 6.85876 6.91420 7.26498 7.36330 7.55738 7.69621 7.81636 7.94401 8.19993 8.40791 8.90492 9.50037 10.95246 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.002335 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.356532 B =11987.761430 C =13035.457127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.211 3.789 3 H 0.042 0.958 4 C -0.500 4.500 5 H 0.065 0.935 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.517 5.517 13 C 0.028 3.972 14 C 0.038 3.962 15 C 0.518 3.482 16 O -0.485 6.485 17 N -0.678 5.678 18 C 0.227 3.773 19 C -0.114 4.114 20 C -0.026 4.026 21 C -0.062 4.062 22 N 0.035 4.965 23 O -0.163 6.163 24 O -0.158 6.158 25 C -0.025 4.025 26 C -0.079 4.079 27 Cl -0.034 7.034 28 H 0.006 0.994 29 H 0.091 0.909 30 H 0.033 0.967 31 H 0.260 0.740 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.015 0.985 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.419 0.581 38 H 0.176 0.824 39 H 0.163 0.837 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.479 0.398 20.529 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.106 3.894 3 H 0.059 0.941 4 C -0.538 4.538 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.241 5.241 13 C -0.120 4.120 14 C -0.094 4.094 15 C 0.307 3.693 16 O -0.356 6.356 17 N -0.325 5.325 18 C 0.127 3.873 19 C -0.136 4.136 20 C -0.046 4.046 21 C -0.146 4.146 22 N 0.553 4.447 23 O -0.378 6.378 24 O -0.374 6.374 25 C -0.045 4.045 26 C -0.109 4.109 27 Cl -0.005 7.005 28 H 0.025 0.975 29 H 0.110 0.890 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.257 0.743 38 H 0.193 0.807 39 H 0.181 0.819 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.969 0.199 19.540 19.565 hybrid contribution -1.046 0.007 -0.380 1.113 sum -0.077 0.206 19.160 19.161 Atomic orbital electron populations 1.22448 1.00677 0.99648 1.00667 1.19397 0.89835 0.94604 0.85578 0.94061 1.21115 1.30691 1.12633 0.89373 0.91668 1.24921 0.95149 0.95118 0.99084 1.69881 1.36990 1.23061 1.23478 0.86433 0.78563 0.79713 0.82692 1.19659 1.21137 1.21003 1.62177 1.59538 1.02183 1.00183 1.22387 0.96559 0.90507 1.02515 1.21954 0.97580 0.99948 0.89909 1.21620 0.81702 0.83057 0.82938 1.90676 1.34585 1.26509 1.83835 1.44084 1.51807 1.31291 1.05303 1.17916 0.90853 0.92531 0.85961 1.21461 0.92839 0.98882 1.00376 1.21105 1.00579 0.94048 0.88859 1.20859 0.97107 1.09213 0.87451 1.43456 1.00459 0.98722 1.02015 1.94544 1.64598 1.63636 1.15047 1.94559 1.06190 1.45570 1.91053 1.20579 0.92097 0.92318 0.99538 1.20434 0.90546 1.05765 0.94158 1.98416 1.23297 1.80857 1.97887 0.97472 0.89029 0.94811 0.92967 0.90505 0.92416 0.96654 0.87750 0.91817 0.74326 0.80678 0.81930 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.84 8.28 37.16 0.31 -3.53 16 2 C 0.21 4.87 2.34 -68.86 -0.16 4.71 16 3 H 0.04 1.03 8.03 -51.93 -0.42 0.61 16 4 C -0.50 -12.99 7.94 -34.44 -0.27 -13.26 16 5 H 0.07 1.73 6.75 -52.49 -0.35 1.38 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.89 -24.21 11.32 55.43 0.63 -23.58 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 N -0.52 -10.17 4.48 -237.73 -1.06 -11.24 16 13 C 0.03 0.54 8.53 60.06 0.51 1.06 16 14 C 0.04 0.55 4.89 -4.98 -0.02 0.53 16 15 C 0.52 6.82 7.37 -10.99 -0.08 6.73 16 16 O -0.49 -7.79 11.75 5.55 0.07 -7.73 16 17 N -0.68 -6.47 5.05 -9.84 -0.05 -6.52 16 18 C 0.23 2.17 6.30 -83.64 -0.53 1.64 16 19 C -0.11 -1.12 8.70 -39.40 -0.34 -1.47 16 20 C -0.03 -0.23 9.55 -39.60 -0.38 -0.61 16 21 C -0.06 -0.60 6.85 -79.92 -0.55 -1.15 16 22 N 0.03 0.40 4.45 33.98 0.15 0.55 16 23 O -0.16 -1.99 18.44 -29.46 -0.54 -2.53 16 24 O -0.16 -1.95 18.44 -29.46 -0.54 -2.50 16 25 C -0.03 -0.21 9.33 -39.58 -0.37 -0.58 16 26 C -0.08 -0.67 6.34 -39.32 -0.25 -0.92 16 27 Cl -0.03 -0.25 27.96 -51.86 -1.45 -1.70 16 28 H 0.01 0.12 6.75 -51.93 -0.35 -0.23 16 29 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 30 H 0.03 0.73 6.39 -51.93 -0.33 0.40 16 31 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.08 1.60 6.53 -51.93 -0.34 1.26 16 33 H 0.06 1.04 5.82 -51.93 -0.30 0.74 16 34 H 0.02 0.28 6.28 -51.93 -0.33 -0.05 16 35 H 0.10 1.38 8.00 -51.93 -0.42 0.97 16 36 H 0.06 0.87 6.94 -51.93 -0.36 0.51 16 37 H 0.42 2.96 8.08 -40.82 -0.33 2.63 16 38 H 0.18 1.91 6.20 -52.48 -0.33 1.58 16 39 H 0.16 1.23 7.60 -52.49 -0.40 0.83 16 40 H 0.17 1.17 7.60 -52.49 -0.40 0.77 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -29.18 349.83 -8.88 -38.06 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.10 Total: 1.65 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -2.23 Total: -5.40 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: -0.34 Total: -40.79 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -1.02 Total: -12.75 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.45 Total: -1.70 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.18 -8.88 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129626321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.586 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds