Wall clock time and date at job start Sat Apr 11 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99918 * 2 1 4 4 C 1.53006 * 109.46855 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47127 * 65.00268 * 4 3 2 6 6 C 1.46500 * 119.99957 * 273.88933 * 5 4 3 7 7 C 1.50699 * 109.47528 * 263.65006 * 6 5 4 8 8 H 1.08005 * 119.99435 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00295 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99941 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99734 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46892 * 90.00229 * 11 9 7 13 13 H 1.48504 * 109.46895 * 209.99393 * 11 9 7 14 14 H 1.48495 * 109.47255 * 329.99597 * 11 9 7 15 15 C 1.34775 * 120.00504 * 93.89266 * 5 4 3 16 16 O 1.21362 * 119.99747 * 354.60244 * 15 5 4 17 17 C 1.49348 * 120.00180 * 174.60803 * 15 5 4 18 18 O 1.21377 * 120.00083 * 0.02562 * 17 15 5 19 19 N 1.34775 * 119.99946 * 180.02562 * 17 15 5 20 20 C 1.39793 * 120.00268 * 185.13159 * 19 17 15 21 21 C 1.39262 * 120.49313 * 327.27818 * 20 19 17 22 22 C 1.38543 * 118.36733 * 180.23973 * 21 20 19 23 23 C 1.38242 * 119.26918 * 359.45788 * 22 21 20 24 24 N 1.31893 * 120.94380 * 0.27666 * 23 22 21 25 25 C 1.31889 * 121.78533 * 359.97438 * 24 23 22 26 26 Cl 1.73603 * 119.68862 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.47042 * 300.00332 * 1 2 3 28 28 H 1.08997 * 109.46950 * 60.00282 * 1 2 3 29 29 H 1.08997 * 109.46739 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47135 * 60.00020 * 3 2 1 31 31 H 1.08996 * 109.47472 * 299.99443 * 3 2 1 32 32 H 1.09000 * 109.47392 * 304.99750 * 4 3 2 33 33 H 1.09009 * 109.46922 * 184.99693 * 4 3 2 34 34 H 1.09002 * 109.46914 * 23.64975 * 6 5 4 35 35 H 1.08993 * 109.47651 * 143.64456 * 6 5 4 36 36 H 0.97001 * 119.99863 * 179.97438 * 10 9 7 37 37 H 0.96998 * 120.00145 * 5.12462 * 19 17 15 38 38 H 1.07994 * 120.81792 * 359.97438 * 21 20 19 39 39 H 1.07993 * 120.36471 * 179.73397 * 22 21 20 40 40 H 1.08001 * 119.52525 * 180.25947 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.0246 -0.8956 -1.3676 7 6 5.4254 -1.3762 -1.0887 8 1 6.2024 -0.6654 -0.8490 9 6 5.7154 -2.7231 -1.1407 10 7 4.7693 -3.5886 -1.4331 11 14 7.4520 -3.3186 -0.7958 12 1 7.6011 -3.5959 0.6555 13 1 7.7113 -4.5614 -1.5663 14 1 8.4241 -2.2722 -1.2023 15 6 4.3386 1.3356 -2.2949 16 8 4.2065 2.5405 -2.2334 17 6 4.9020 0.7081 -3.5274 18 8 5.0335 -0.4969 -3.5892 19 7 5.2643 1.4799 -4.5712 20 6 5.6905 0.8877 -5.7637 21 6 6.3819 -0.3210 -5.7448 22 6 6.7880 -0.8660 -6.9520 23 6 6.4868 -0.2042 -8.1278 24 7 5.8255 0.9369 -8.1134 25 6 5.4245 1.4933 -6.9869 26 17 4.5581 2.9971 -7.0314 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9785 2.1766 0.0902 34 1 3.3378 -1.3404 -0.6474 35 1 3.7338 -1.1893 -2.3761 36 1 4.9734 -4.5361 -1.4701 37 1 5.2293 2.4462 -4.4952 38 1 6.5999 -0.8192 -4.8117 39 1 7.3300 -1.7998 -6.9746 40 1 6.7977 -0.6275 -9.0715 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132906835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:17 Heat of formation + Delta-G solvation = -57.796343 kcal Electronic energy + Delta-G solvation = -27933.125812 eV Core-core repulsion = 23775.441286 eV Total energy + Delta-G solvation = -4157.684526 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93572 -39.78007 -38.22906 -37.36150 -36.68994 -35.68348 -34.44626 -32.55723 -32.08871 -30.12014 -29.87776 -27.11472 -26.19978 -24.99384 -23.85049 -23.10409 -22.88411 -21.43137 -19.49449 -17.94270 -17.26873 -16.98698 -16.68465 -16.44612 -16.23689 -15.78811 -15.45183 -15.19236 -14.72779 -14.64709 -14.53781 -14.30552 -14.17922 -13.49363 -13.31622 -13.06874 -12.47663 -12.32370 -12.09533 -11.84430 -11.78458 -11.62863 -11.60438 -11.36732 -11.00635 -10.92196 -10.89822 -10.79280 -10.46044 -10.02121 -9.83221 -9.69920 -9.52557 -9.43536 -8.75658 -8.32904 -8.24205 -7.89256 -6.02029 -4.04179 0.81089 1.15930 1.76041 2.01832 2.68053 3.28009 3.34997 3.37249 3.56220 3.80230 3.92289 4.09128 4.43159 4.48471 4.73716 4.82937 5.02418 5.13435 5.30561 5.32973 5.34183 5.41465 5.53461 5.57572 5.58216 5.80803 5.89411 5.90603 6.11439 6.20209 6.22438 6.65194 6.66562 7.20249 7.38800 7.44178 7.52910 7.64555 7.87545 8.06220 8.16940 8.23284 8.56122 8.95698 9.57206 11.06590 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.008932 B = 0.004749 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.000063 B = 5894.325352 C = 8174.919652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.047 3.953 4 C 0.117 3.883 5 N -0.549 5.549 6 C 0.231 3.769 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.070 3.930 10 N -0.887 5.887 11 Si 0.890 3.110 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.507 3.493 16 O -0.561 6.561 17 C 0.491 3.509 18 O -0.424 6.424 19 N -0.656 5.656 20 C 0.132 3.868 21 C -0.071 4.071 22 C -0.144 4.144 23 C 0.090 3.910 24 N -0.462 5.462 25 C 0.140 3.860 26 Cl -0.032 7.032 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.261 0.739 37 H 0.420 0.580 38 H 0.171 0.829 39 H 0.147 0.853 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.527 8.605 -5.932 10.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.006 4.006 5 N -0.278 5.278 6 C 0.112 3.888 7 C -0.554 4.554 8 H 0.070 0.930 9 C -0.132 4.132 10 N -0.526 5.526 11 Si 0.718 3.282 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.289 3.711 16 O -0.443 6.443 17 C 0.272 3.728 18 O -0.290 6.290 19 N -0.305 5.305 20 C 0.032 3.968 21 C -0.099 4.099 22 C -0.165 4.165 23 C -0.068 4.068 24 N -0.172 5.172 25 C -0.027 4.027 26 Cl -0.004 7.004 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.259 0.741 38 H 0.188 0.812 39 H 0.164 0.836 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.758 8.464 -6.617 10.886 hybrid contribution 0.816 -0.064 0.940 1.246 sum -0.942 8.400 -5.678 10.182 Atomic orbital electron populations 1.22692 0.81936 1.02573 0.99188 1.88077 1.18868 1.27101 1.95213 1.22977 0.94688 0.85262 1.00099 1.21559 0.91731 0.99869 0.87428 1.48237 1.58469 1.10815 1.10278 1.19996 0.97889 0.70583 1.00291 1.21223 0.94621 0.92107 1.47475 0.92955 1.24781 0.96759 0.96558 0.95147 1.69929 1.32216 1.02098 1.48338 0.86641 0.85081 0.78272 0.78196 1.20765 1.21190 1.20128 1.19621 0.80319 0.86405 0.84722 1.90663 1.57128 1.14183 1.82323 1.20514 0.80267 0.87508 0.84475 1.90982 1.46414 1.12756 1.78866 1.43250 1.65173 1.11527 1.10573 1.18313 0.97564 0.95678 0.85257 1.22090 0.92938 0.93603 1.01233 1.22230 1.00374 1.01442 0.92432 1.22585 0.95520 0.89937 0.98807 1.66932 1.10825 1.11505 1.27968 1.21417 1.00359 0.92249 0.88697 1.98396 1.74120 1.29383 1.98464 0.94646 0.94590 0.89728 0.92788 0.93216 0.88791 0.88897 0.93247 0.92193 0.92907 0.74134 0.81212 0.83570 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.47 9.28 -35.23 -0.33 -6.80 16 3 C 0.05 0.72 6.28 37.16 0.23 0.96 16 4 C 0.12 2.00 5.82 -4.04 -0.02 1.98 16 5 N -0.55 -11.33 2.46 -175.61 -0.43 -11.76 16 6 C 0.23 5.64 4.51 -5.19 -0.02 5.61 16 7 C -0.52 -13.56 7.77 -34.44 -0.27 -13.82 16 8 H 0.05 1.39 7.81 -52.48 -0.41 0.98 16 9 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 10 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 11 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 15 C 0.51 10.20 7.67 -11.63 -0.09 10.11 16 16 O -0.56 -11.08 16.06 5.49 0.09 -10.99 16 17 C 0.49 9.64 7.59 -11.63 -0.09 9.55 16 18 O -0.42 -9.48 9.44 5.47 0.05 -9.43 16 19 N -0.66 -10.79 5.07 -10.17 -0.05 -10.85 16 20 C 0.13 2.08 6.36 -83.54 -0.53 1.55 16 21 C -0.07 -1.10 8.83 -39.09 -0.35 -1.44 16 22 C -0.14 -1.78 10.10 -39.47 -0.40 -2.18 16 23 C 0.09 1.06 11.17 -17.52 -0.20 0.86 16 24 N -0.46 -6.57 10.33 -10.19 -0.11 -6.68 16 25 C 0.14 2.08 7.30 -17.22 -0.13 1.96 16 26 Cl -0.03 -0.43 28.09 -51.86 -1.46 -1.89 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 33 H 0.09 1.45 7.39 -51.92 -0.38 1.06 16 34 H 0.05 1.29 6.90 -51.93 -0.36 0.94 16 35 H 0.06 1.61 5.85 -51.93 -0.30 1.30 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.42 6.28 7.51 -40.82 -0.31 5.98 16 38 H 0.17 3.01 6.13 -52.49 -0.32 2.69 16 39 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -31.04 359.58 -6.54 -37.58 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.60 Total: 5.48 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: -0.84 Total: 18.46 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.15 Total: -53.73 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.19 Total: -27.22 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.46 Total: -1.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.04 -6.54 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132906835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.218 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds