Wall clock time and date at job start Sat Apr 11 2020 06:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47030 * 2 1 4 4 C 1.53001 * 109.47172 * 240.00601 * 2 1 3 5 5 C 1.53004 * 109.47224 * 175.00088 * 4 2 1 6 6 N 1.46503 * 109.47087 * 179.97438 * 5 4 2 7 7 C 1.34772 * 119.99774 * 179.97438 * 6 5 4 8 8 O 1.21552 * 120.00061 * 0.02562 * 7 6 5 9 9 C 1.47860 * 120.00133 * 179.97438 * 7 6 5 10 10 C 1.39674 * 120.09890 * 359.72892 * 9 7 6 11 11 C 1.38037 * 120.04028 * 179.74115 * 10 9 7 12 12 C 1.38177 * 120.24389 * 0.55880 * 11 10 9 13 13 C 1.39185 * 120.19819 * 359.69585 * 12 11 10 14 14 S 1.76202 * 120.01737 * 180.02562 * 13 12 11 15 15 C 1.76203 * 99.99892 * 265.52509 * 14 13 12 16 16 H 1.08004 * 120.00108 * 5.12862 * 15 14 13 17 17 C 1.38725 * 120.00122 * 185.11676 * 15 14 13 18 18 N 1.31619 * 120.00413 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99994 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47439 * 89.99790 * 19 17 15 21 21 H 1.48500 * 109.47453 * 209.99796 * 19 17 15 22 22 H 1.48506 * 109.47057 * 329.99716 * 19 17 15 23 23 C 1.38875 * 119.95891 * 0.02562 * 13 12 11 24 24 S 1.81402 * 109.47238 * 120.00157 * 2 1 3 25 25 C 1.81396 * 102.99918 * 305.00161 * 24 2 1 26 26 O 1.42104 * 109.46795 * 188.61563 * 24 2 1 27 27 H 1.08997 * 109.46625 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47307 * 299.99525 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99698 * 1 2 3 30 30 H 1.09003 * 109.47208 * 54.99552 * 4 2 1 31 31 H 1.09002 * 109.46898 * 294.99759 * 4 2 1 32 32 H 1.09001 * 109.46647 * 299.99181 * 5 4 2 33 33 H 1.08991 * 109.47166 * 59.99047 * 5 4 2 34 34 H 0.97000 * 119.99807 * 359.97438 * 6 5 4 35 35 H 1.08011 * 119.98232 * 0.02562 * 10 9 7 36 36 H 1.08006 * 119.88021 * 180.25597 * 11 10 9 37 37 H 1.07994 * 119.90317 * 179.71961 * 12 11 10 38 38 H 0.96998 * 120.00833 * 180.02562 * 18 17 15 39 39 H 1.07997 * 120.11653 * 180.02562 * 23 13 12 40 40 H 1.09002 * 109.47296 * 60.00000 * 25 24 2 41 41 H 1.09006 * 109.46989 * 180.02562 * 25 24 2 42 42 H 1.09005 * 109.47195 * 299.99503 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5649 -0.6132 -1.3138 6 7 4.0532 -1.3042 -2.5097 7 6 5.3741 -1.3396 -2.7753 8 8 6.1601 -0.7986 -2.0224 9 6 5.8671 -2.0375 -3.9820 10 6 4.9663 -2.6656 -4.8451 11 6 5.4274 -3.3122 -5.9741 12 6 6.7808 -3.3514 -6.2498 13 6 7.6878 -2.7334 -5.3939 14 16 9.4126 -2.7857 -5.7504 15 6 9.8805 -4.1892 -4.7933 16 1 9.1264 -4.7718 -4.2849 17 6 11.2173 -4.5460 -4.6931 18 7 11.5668 -5.5947 -3.9786 19 14 12.5215 -3.5382 -5.5721 20 1 12.9997 -2.4563 -4.6742 21 1 13.6612 -4.4162 -5.9398 22 1 11.9403 -2.9407 -6.8012 23 6 7.2326 -2.0755 -4.2587 24 16 2.1347 -0.8552 1.4811 25 6 1.3149 0.0373 2.8309 26 8 3.5415 -0.6838 1.5857 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6053 -0.2616 -2.1370 31 1 1.7517 -1.7714 -1.2057 32 1 3.8532 0.4371 -1.3574 33 1 3.9994 -1.0726 -0.4261 34 1 3.4259 -1.7362 -3.1103 35 1 3.9078 -2.6415 -4.6314 36 1 4.7282 -3.7935 -6.6419 37 1 7.1359 -3.8627 -7.1323 38 1 12.5015 -5.8440 -3.9081 39 1 7.9341 -1.5948 -3.5930 40 1 0.2339 -0.0406 2.7141 41 1 1.6099 -0.3976 3.7859 42 1 1.6087 1.0867 2.8038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134910833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:31 Heat of formation + Delta-G solvation = -56.669429 kcal Electronic energy + Delta-G solvation = -23775.610950 eV Core-core repulsion = 20166.312212 eV Total energy + Delta-G solvation = -3609.298739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.94553 -37.96484 -36.49407 -36.03924 -34.03938 -32.47061 -31.24292 -30.61473 -29.81694 -28.45916 -25.65117 -24.60532 -23.01683 -22.35586 -21.96483 -20.35103 -18.38540 -17.71257 -17.30820 -16.88406 -16.19816 -15.76563 -15.33527 -15.23579 -15.04626 -14.91372 -14.64207 -14.32585 -14.20143 -13.67952 -13.65833 -13.40908 -13.06571 -13.00277 -12.89839 -12.78555 -12.42731 -12.11132 -11.96922 -11.92163 -11.61143 -11.56418 -11.32643 -11.16373 -11.07258 -10.60495 -10.24989 -9.90978 -9.75191 -9.19270 -9.08084 -9.05331 -8.61769 -8.60825 -8.13411 -7.10610 -6.29935 -4.05369 1.10201 1.14236 1.61816 2.17799 2.88045 3.08402 3.13470 3.30134 3.40845 3.40985 3.52819 4.10773 4.20833 4.29061 4.32955 4.63348 4.68430 4.77030 4.80841 4.90940 4.92690 4.96880 5.05798 5.08967 5.13035 5.21036 5.30777 5.35956 5.47029 5.60019 5.66781 5.71177 5.81623 5.85830 5.98025 6.20804 6.37872 6.55071 6.59132 6.85900 7.13668 7.52173 7.94239 8.34577 8.47879 9.13909 10.79529 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.002170 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.822611 B =12901.646698 C =13848.384742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.413 4.413 3 H 0.093 0.907 4 C -0.105 4.105 5 C 0.097 3.903 6 N -0.731 5.731 7 C 0.561 3.439 8 O -0.528 6.528 9 C -0.151 4.151 10 C -0.086 4.086 11 C -0.140 4.140 12 C -0.052 4.052 13 C -0.085 4.085 14 S -0.113 6.113 15 C -0.508 4.508 16 H 0.091 0.909 17 C 0.095 3.905 18 N -0.876 5.876 19 Si 0.858 3.142 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.239 1.239 23 C -0.017 4.017 24 S 1.239 4.761 25 C -0.491 4.491 26 O -0.834 6.834 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.398 0.602 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.272 0.728 39 H 0.140 0.860 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.806 7.685 5.918 31.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.531 4.531 3 H 0.111 0.889 4 C -0.143 4.143 5 C -0.027 4.027 6 N -0.385 5.385 7 C 0.349 3.651 8 O -0.405 6.405 9 C -0.156 4.156 10 C -0.105 4.105 11 C -0.159 4.159 12 C -0.073 4.073 13 C -0.196 4.196 14 S 0.121 5.879 15 C -0.655 4.655 16 H 0.109 0.891 17 C -0.114 4.114 18 N -0.512 5.512 19 Si 0.682 3.318 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.163 1.163 23 C -0.039 4.039 24 S 1.436 4.564 25 C -0.649 4.649 26 O -0.829 6.829 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.233 0.767 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.082 0.918 39 H 0.158 0.842 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -27.720 7.898 5.951 29.431 hybrid contribution 0.117 1.574 0.367 1.620 sum -27.604 9.472 6.318 29.860 Atomic orbital electron populations 1.21512 0.90869 1.03220 1.02887 1.27396 1.03655 1.09415 1.12590 0.88872 1.21479 0.94580 1.01385 0.96904 1.21735 0.93224 0.98419 0.89323 1.45804 1.07610 1.58010 1.27082 1.18389 0.81839 0.79641 0.85272 1.90807 1.55234 1.45298 1.49130 1.19846 0.94799 1.04318 0.96632 1.21165 0.98212 0.96760 0.94391 1.21039 0.95735 1.01322 0.97845 1.21891 0.92374 0.94539 0.98497 1.22197 1.00603 1.00009 0.96762 1.83059 0.97381 1.43102 1.64356 1.22246 0.96813 1.11004 1.35463 0.89052 1.24743 0.97724 0.94794 0.94160 1.69921 1.18201 1.25132 1.37939 0.86732 0.82193 0.80860 0.81966 1.19035 1.19800 1.16347 1.21906 0.93773 0.93374 0.94815 1.70689 0.90019 1.09665 0.86034 1.27691 1.10883 1.10804 1.15492 1.93236 1.24966 1.81462 1.83258 0.90824 0.91973 0.91735 0.90135 0.89863 0.91714 0.89140 0.76673 0.86306 0.85607 0.84906 0.91815 0.84201 0.86843 0.87576 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.28 8.94 37.16 0.33 0.05 16 2 C -0.41 -2.17 2.89 -26.73 -0.08 -2.25 16 3 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 4 C -0.10 -0.65 4.80 -26.73 -0.13 -0.77 16 5 C 0.10 1.14 5.34 -4.04 -0.02 1.12 16 6 N -0.73 -9.05 5.51 -61.24 -0.34 -9.38 16 7 C 0.56 9.80 7.77 -12.32 -0.10 9.70 16 8 O -0.53 -11.67 16.34 5.32 0.09 -11.58 16 9 C -0.15 -2.62 5.87 -105.00 -0.62 -3.24 16 10 C -0.09 -1.17 9.54 -39.12 -0.37 -1.54 16 11 C -0.14 -1.96 10.02 -39.68 -0.40 -2.36 16 12 C -0.05 -0.92 9.79 -39.25 -0.38 -1.30 16 13 C -0.09 -1.82 5.45 -38.99 -0.21 -2.03 16 14 S -0.11 -2.80 19.38 -107.50 -2.08 -4.89 16 15 C -0.51 -14.88 10.01 30.91 0.31 -14.57 16 16 H 0.09 2.90 8.02 -52.48 -0.42 2.48 16 17 C 0.09 2.78 5.50 -17.46 -0.10 2.69 16 18 N -0.88 -26.75 13.97 55.49 0.77 -25.97 16 19 Si 0.86 21.45 27.74 -169.99 -4.71 16.74 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.24 -5.78 6.74 56.52 0.38 -5.40 16 23 C -0.02 -0.36 9.34 -38.92 -0.36 -0.72 16 24 S 1.24 7.56 12.99 -107.50 -1.40 6.16 16 25 C -0.49 -2.21 10.14 101.05 1.02 -1.18 16 26 O -0.83 -11.74 15.80 -35.23 -0.56 -12.30 16 27 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.06 0.08 6.51 -51.93 -0.34 -0.25 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.32 5.58 -51.93 -0.29 1.03 16 34 H 0.40 3.40 6.50 -40.82 -0.27 3.14 16 35 H 0.12 1.08 6.40 -52.48 -0.34 0.74 16 36 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 37 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.14 3.18 7.65 -52.49 -0.40 2.78 16 40 H 0.11 0.17 6.90 -51.92 -0.36 -0.19 16 41 H 0.11 0.48 8.14 -51.92 -0.42 0.05 16 42 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -40.61 375.19 -9.47 -50.08 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.79 Total: 1.92 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.10 Total: -16.43 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.44 Total: -35.36 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.47 Total: -23.88 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.74 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -3.48 Total: 1.28 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -40.61 -9.47 -50.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134910833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.594 kcal (2) G-P(sol) polarization free energy of solvation -40.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds