Wall clock time and date at job start Sat Apr 11 2020 06:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00015 * 2 1 4 4 O 1.20833 * 120.00171 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99997 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.47064 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.46778 * 180.02562 * 6 5 3 8 8 C 1.34771 * 120.00411 * 89.99973 * 7 6 5 9 9 O 1.21292 * 119.99874 * 5.21074 * 8 7 6 10 10 C 1.50700 * 120.00180 * 185.21885 * 8 7 6 11 11 S 1.81001 * 109.47004 * 185.38618 * 10 8 7 12 12 C 1.76202 * 99.99750 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99907 * 0.02562 * 12 11 10 14 14 C 1.38796 * 120.00007 * 180.02562 * 12 11 10 15 15 N 1.31634 * 120.00398 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99850 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47059 * 90.00269 * 16 14 12 18 18 H 1.48498 * 109.47256 * 209.99975 * 16 14 12 19 19 H 1.48497 * 109.47440 * 330.00114 * 16 14 12 20 20 C 1.39923 * 119.99582 * 269.99532 * 7 6 5 21 21 C 1.38909 * 120.05749 * 112.46432 * 20 7 6 22 22 C 1.38101 * 119.97902 * 179.67151 * 21 20 7 23 23 C 1.38260 * 120.09370 * 0.62688 * 22 21 20 24 24 C 1.38482 * 120.11770 * 359.67528 * 23 22 21 25 25 F 1.35103 * 119.99215 * 180.02562 * 24 23 22 26 26 C 1.38356 * 120.02055 * 359.97438 * 24 23 22 27 27 H 1.09003 * 109.47194 * 60.00440 * 1 2 3 28 28 H 1.08998 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47253 * 300.00395 * 1 2 3 30 30 H 1.09002 * 109.47086 * 59.99314 * 5 3 2 31 31 H 1.09007 * 109.46994 * 299.99691 * 5 3 2 32 32 H 1.08998 * 109.46993 * 59.99710 * 6 5 3 33 33 H 1.08998 * 109.46762 * 299.99715 * 6 5 3 34 34 H 1.09002 * 109.46892 * 65.38394 * 10 8 7 35 35 H 1.08999 * 109.46785 * 305.38685 * 10 8 7 36 36 H 0.97000 * 120.00460 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.00787 * 359.97438 * 21 20 7 38 38 H 1.07999 * 119.95178 * 180.32086 * 22 21 20 39 39 H 1.08011 * 119.94061 * 179.69510 * 23 22 21 40 40 H 1.07997 * 120.04651 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8187 -0.0002 8 6 6.1362 2.8533 -1.1674 9 8 5.5293 2.9165 -2.2157 10 6 7.6426 2.8133 -1.1700 11 16 8.2490 3.0337 -2.8611 12 6 9.9859 2.9481 -2.5768 13 1 10.3624 2.7979 -1.5759 14 6 10.8700 3.0739 -3.6393 15 7 12.1675 3.0095 -3.4271 16 14 10.2185 3.3331 -5.3708 17 1 10.0820 4.7879 -5.6357 18 1 11.1639 2.7385 -6.3496 19 1 8.8920 2.6791 -5.5037 20 6 6.1617 2.8560 1.2116 21 6 6.9645 1.7857 1.5851 22 6 7.6586 1.8271 2.7783 23 6 7.5456 2.9271 3.6082 24 6 6.7415 3.9937 3.2427 25 9 6.6333 5.0675 4.0553 26 6 6.0496 3.9604 2.0450 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.9564 0.7804 -0.8891 31 1 3.9557 0.7809 0.8909 32 1 3.6100 3.2368 0.8893 33 1 3.6108 3.2355 -0.8907 34 1 7.9812 1.8514 -0.7850 35 1 8.0284 3.6136 -0.5384 36 1 12.7854 3.0977 -4.1696 37 1 7.0496 0.9235 0.9403 38 1 8.2867 0.9969 3.0658 39 1 8.0857 2.9548 4.5432 40 1 5.4228 4.7921 1.7593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173225782.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:09 Heat of formation + Delta-G solvation = -132.826351 kcal Electronic energy + Delta-G solvation = -26680.123432 eV Core-core repulsion = 22501.309106 eV Total energy + Delta-G solvation = -4178.814327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -49.08546 -40.98193 -40.41508 -38.58089 -36.91612 -35.67299 -32.60716 -32.47111 -31.04273 -29.65068 -29.43097 -27.82993 -25.67346 -24.53658 -23.30097 -22.92974 -21.09298 -19.95973 -18.38800 -17.98947 -17.21339 -17.04679 -16.91340 -16.74169 -16.55092 -16.27186 -15.77726 -15.66849 -15.08315 -14.98831 -14.51935 -14.12615 -13.98211 -13.81424 -13.55653 -13.41037 -13.11326 -13.06914 -12.83166 -12.52901 -12.40468 -12.16468 -11.99312 -11.63501 -11.43380 -11.29176 -11.11531 -11.03982 -10.83529 -10.66551 -10.05944 -9.87358 -9.51437 -9.08777 -9.03705 -8.72062 -8.53197 -6.97834 -6.32012 -4.04855 0.80364 0.92541 1.90855 2.17992 2.54516 2.73787 3.04957 3.27704 3.30626 3.47164 3.51647 4.03236 4.28974 4.37953 4.39128 4.56034 4.68250 4.69187 4.73507 4.78437 4.83057 4.86405 4.96000 5.07063 5.08286 5.11822 5.21404 5.37812 5.44679 5.64190 5.66721 5.75322 5.81438 5.93637 5.99567 6.03922 6.06479 6.27817 6.56331 7.21484 7.42379 7.90993 8.12673 8.38925 9.13866 10.77127 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.008668 B = 0.003650 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.357421 B = 7668.574540 C =10134.575328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.470 3.530 4 O -0.507 6.507 5 C -0.133 4.133 6 C 0.129 3.871 7 N -0.578 5.578 8 C 0.540 3.460 9 O -0.497 6.497 10 C -0.122 4.122 11 S -0.142 6.142 12 C -0.520 4.520 13 H 0.089 0.911 14 C 0.097 3.903 15 N -0.879 5.879 16 Si 0.855 3.145 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C 0.167 3.833 21 C -0.130 4.130 22 C -0.073 4.073 23 C -0.154 4.154 24 C 0.112 3.888 25 F -0.137 7.137 26 C -0.157 4.157 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.271 0.729 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.434 -5.816 15.081 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.312 3.688 4 O -0.395 6.395 5 C -0.172 4.172 6 C 0.007 3.993 7 N -0.309 5.309 8 C 0.329 3.671 9 O -0.369 6.369 10 C -0.272 4.272 11 S 0.084 5.916 12 C -0.667 4.667 13 H 0.107 0.893 14 C -0.112 4.112 15 N -0.516 5.516 16 Si 0.680 3.320 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 C 0.076 3.924 21 C -0.149 4.149 22 C -0.092 4.092 23 C -0.172 4.172 24 C 0.092 3.908 25 F -0.116 7.116 26 C -0.177 4.177 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.403 -5.280 13.413 23.377 hybrid contribution 0.558 0.210 0.645 0.879 sum -17.845 -5.070 14.059 23.276 Atomic orbital electron populations 1.23282 0.76159 1.03757 1.02649 1.86513 1.23593 1.33403 1.84070 1.23549 0.91770 0.81390 0.72066 1.90691 1.67278 1.36237 1.45251 1.21797 0.87808 1.00743 1.06819 1.21269 0.78487 0.94031 1.05548 1.45507 1.06127 1.75179 1.04126 1.20501 0.89895 0.74506 0.82243 1.90733 1.69847 1.46248 1.30098 1.23360 0.92438 1.06108 1.05280 1.84784 1.06816 1.95790 1.04191 1.22267 0.87897 1.57714 0.98847 0.89287 1.24701 0.94100 0.93276 0.99141 1.69933 1.01230 1.47676 1.32717 0.86756 0.81144 0.80094 0.83987 1.19201 1.19885 1.15915 1.17284 0.95359 0.93122 0.86652 1.21500 0.98038 0.98140 0.97268 1.20930 0.97605 0.97724 0.92947 1.21232 1.00423 0.93592 1.02002 1.17441 0.99039 0.84938 0.89417 1.91521 1.94822 1.53575 1.71654 1.21217 1.02904 0.99231 0.94364 0.91742 0.88038 0.91866 0.86709 0.87214 0.89260 0.87929 0.87945 0.88482 0.91893 0.84511 0.84161 0.84387 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.52 10.56 -39.25 -0.41 -3.94 16 3 C 0.47 5.11 7.96 36.01 0.29 5.40 16 4 O -0.51 -6.74 15.73 -18.76 -0.30 -7.03 16 5 C -0.13 -1.28 6.14 -27.88 -0.17 -1.45 16 6 C 0.13 1.46 4.68 -4.04 -0.02 1.45 16 7 N -0.58 -7.43 2.52 -113.46 -0.29 -7.72 16 8 C 0.54 9.19 7.59 -10.99 -0.08 9.11 16 9 O -0.50 -10.05 15.43 5.55 0.09 -9.97 16 10 C -0.12 -2.29 4.67 36.01 0.17 -2.12 16 11 S -0.14 -3.50 18.55 -107.50 -1.99 -5.50 16 12 C -0.52 -14.63 10.04 30.94 0.31 -14.32 16 13 H 0.09 2.62 8.03 -52.49 -0.42 2.19 16 14 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 15 N -0.88 -26.14 13.97 55.49 0.78 -25.36 16 16 Si 0.86 21.42 27.74 -169.99 -4.71 16.71 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 20 C 0.17 1.90 4.43 -83.70 -0.37 1.53 16 21 C -0.13 -1.30 8.45 -39.38 -0.33 -1.63 16 22 C -0.07 -0.64 10.04 -39.62 -0.40 -1.03 16 23 C -0.15 -1.40 10.02 -39.48 -0.40 -1.79 16 24 C 0.11 1.20 7.30 -39.45 -0.29 0.91 16 25 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 26 C -0.16 -1.73 9.64 -39.33 -0.38 -2.11 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.89 7.80 -51.93 -0.41 0.49 16 33 H 0.10 1.37 7.31 -51.93 -0.38 0.99 16 34 H 0.10 1.77 6.91 -51.92 -0.36 1.41 16 35 H 0.10 1.80 7.86 -51.92 -0.41 1.39 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.14 1.27 7.56 -52.48 -0.40 0.88 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 40 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -34.16 368.38 -6.86 -41.02 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -4.91 Total: -0.14 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.70 Total: -2.08 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.49 Total: -33.08 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.62 Total: -20.94 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.71 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.16 -6.86 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173225782.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.805 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds