Wall clock time and date at job start Sat Apr 11 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81400 * 103.00023 * 2 1 4 4 H 1.09000 * 109.47016 * 305.00041 * 3 2 1 5 5 C 1.52997 * 109.47083 * 64.99832 * 3 2 1 6 6 O 1.42898 * 109.46763 * 174.99751 * 5 3 2 7 7 C 1.53000 * 109.46878 * 185.00224 * 3 2 1 8 8 H 1.09002 * 109.46790 * 304.99512 * 7 3 2 9 9 C 1.53004 * 109.47512 * 64.99780 * 7 3 2 10 10 N 1.46505 * 109.47054 * 185.00118 * 7 3 2 11 11 C 1.34774 * 120.00150 * 154.99664 * 10 7 3 12 12 O 1.21611 * 119.99964 * 359.97438 * 11 10 7 13 13 C 1.47433 * 119.99869 * 179.97438 * 11 10 7 14 14 C 1.39681 * 120.21363 * 0.02930 * 13 11 10 15 15 C 1.37805 * 119.93452 * 179.97438 * 14 13 11 16 16 C 1.38654 * 120.38625 * 0.02562 * 15 14 13 17 17 C 1.37919 * 120.43362 * 0.02562 * 16 15 14 18 18 C 1.39103 * 120.05168 * 359.97438 * 17 16 15 19 19 S 1.76206 * 120.18762 * 180.02562 * 18 17 16 20 20 C 1.76190 * 99.99940 * 6.84043 * 19 18 17 21 21 H 1.07998 * 120.00270 * 5.65109 * 20 19 18 22 22 C 1.38809 * 120.00047 * 185.65490 * 20 19 18 23 23 N 1.31555 * 120.00018 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00216 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00065 * 24 22 20 26 26 H 1.48500 * 109.46864 * 209.99830 * 24 22 20 27 27 H 1.48502 * 109.47056 * 329.99897 * 24 22 20 28 28 H 1.09005 * 109.46760 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47114 * 299.99911 * 1 2 3 30 30 H 1.09001 * 109.46833 * 60.00535 * 1 2 3 31 31 H 1.08996 * 109.47021 * 295.00318 * 5 3 2 32 32 H 1.09006 * 109.46963 * 55.00469 * 5 3 2 33 33 H 0.96699 * 113.99770 * 179.97438 * 6 5 3 34 34 H 1.08996 * 109.46954 * 179.97438 * 9 7 3 35 35 H 1.09000 * 109.46661 * 300.00162 * 9 7 3 36 36 H 1.09003 * 109.46425 * 60.00258 * 9 7 3 37 37 H 0.97000 * 119.99614 * 334.99878 * 10 7 3 38 38 H 1.07997 * 120.03131 * 359.97438 * 14 13 11 39 39 H 1.08008 * 119.80557 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.78248 * 180.28485 * 16 15 14 41 41 H 1.07998 * 119.97190 * 179.97438 * 17 16 15 42 42 H 0.96996 * 120.00225 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 8 2.1662 3.7654 1.3584 7 6 3.7370 1.9411 -0.1258 8 1 4.2339 1.3803 0.6659 9 6 4.1989 1.4190 -1.4878 10 7 4.0774 3.3610 -0.0060 11 6 5.3046 3.7266 0.4146 12 8 6.1291 2.8779 0.6952 13 6 5.6473 5.1556 0.5346 14 6 4.7034 6.1341 0.2142 15 6 5.0297 7.4680 0.3289 16 6 6.2917 7.8467 0.7608 17 6 7.2359 6.8936 1.0804 18 6 6.9259 5.5419 0.9712 19 16 8.1294 4.3212 1.3791 20 6 9.4000 5.3511 2.0340 21 1 9.2257 6.4093 2.1610 22 6 10.6253 4.8024 2.3867 23 7 10.8376 3.5133 2.2324 24 14 11.9729 5.8944 3.0804 25 1 11.8525 5.9501 4.5595 26 1 13.2995 5.3378 2.7124 27 1 11.8378 7.2633 2.5208 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.6548 2.3568 1.3553 32 1 2.1665 1.8577 2.1516 33 1 1.8964 4.2311 2.1618 34 1 5.2781 1.5431 -1.5775 35 1 3.9456 0.3626 -1.5768 36 1 3.7020 1.9799 -2.2794 37 1 3.4196 4.0379 -0.2294 38 1 3.7189 5.8455 -0.1232 39 1 4.2981 8.2229 0.0810 40 1 6.5355 8.8949 0.8516 41 1 8.2167 7.1969 1.4157 42 1 11.6940 3.1299 2.4785 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230352883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:41 Heat of formation + Delta-G solvation = -51.447403 kcal Electronic energy + Delta-G solvation = -25140.888726 eV Core-core repulsion = 21531.816432 eV Total energy + Delta-G solvation = -3609.072295 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.61951 -37.93147 -37.05344 -35.11131 -32.69673 -32.04997 -30.34419 -30.18705 -29.47384 -28.51679 -25.76481 -24.01803 -23.08676 -21.92136 -21.03936 -20.00496 -18.31879 -17.69448 -17.03634 -16.43378 -15.96822 -15.68200 -15.22481 -15.08677 -14.74750 -14.35607 -14.14312 -14.07076 -13.79254 -13.72316 -13.61038 -13.02877 -12.90104 -12.74014 -12.62938 -12.35874 -11.98865 -11.80516 -11.51649 -11.29687 -11.16443 -11.12461 -10.98152 -10.87448 -10.43829 -10.26921 -10.11772 -9.72527 -9.53015 -9.41127 -8.66899 -8.54112 -8.22533 -8.00914 -7.96455 -6.45763 -6.40496 -4.10315 1.20743 1.64345 2.10402 2.15202 3.14285 3.16173 3.22662 3.49114 3.65411 3.77451 4.03408 4.12023 4.28964 4.58646 4.72057 4.78074 4.81155 4.90030 5.00136 5.09851 5.21325 5.33009 5.35762 5.44134 5.47427 5.57082 5.58317 5.67680 5.89614 6.00301 6.17056 6.22886 6.38507 6.47559 6.69021 6.93806 6.99841 7.12103 7.21195 7.40427 7.50822 7.66969 8.17140 8.21711 8.98642 9.05587 10.62685 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.003121 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.197984 B = 8970.561244 C =10170.255438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.215 6.215 3 C -0.071 4.071 4 H 0.096 0.904 5 C 0.085 3.915 6 O -0.559 6.559 7 C 0.172 3.828 8 H 0.093 0.907 9 C -0.165 4.165 10 N -0.708 5.708 11 C 0.555 3.445 12 O -0.516 6.516 13 C -0.171 4.171 14 C -0.056 4.056 15 C -0.190 4.190 16 C -0.078 4.078 17 C -0.156 4.156 18 C -0.057 4.057 19 S 0.182 5.818 20 C -0.596 4.596 21 H 0.090 0.910 22 C 0.083 3.917 23 N -0.859 5.859 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.280 1.280 27 H -0.268 1.268 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.380 0.620 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.401 0.599 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.137 0.863 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.750 -1.224 -4.352 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.011 5.989 3 C -0.201 4.201 4 H 0.115 0.885 5 C 0.004 3.996 6 O -0.365 6.365 7 C 0.066 3.934 8 H 0.111 0.889 9 C -0.224 4.224 10 N -0.365 5.365 11 C 0.344 3.656 12 O -0.394 6.394 13 C -0.186 4.186 14 C -0.077 4.077 15 C -0.214 4.214 16 C -0.101 4.101 17 C -0.181 4.181 18 C -0.177 4.177 19 S 0.446 5.554 20 C -0.742 4.742 21 H 0.108 0.892 22 C -0.128 4.128 23 N -0.491 5.491 24 Si 0.743 3.257 25 H -0.199 1.199 26 H -0.205 1.205 27 H -0.193 1.193 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.229 0.771 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.240 0.760 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.155 0.845 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.776 -4.508 -4.720 20.826 hybrid contribution -0.760 3.613 0.982 3.821 sum -20.537 -0.895 -3.738 20.893 Atomic orbital electron populations 1.23487 0.94963 1.06663 1.04977 1.87114 1.06289 1.07827 1.97663 1.23575 1.01001 0.94691 1.00783 0.88547 1.22421 0.96990 0.83730 0.96416 1.86455 1.80700 1.23295 1.46073 1.20363 0.89534 0.84239 0.99267 0.88888 1.22278 1.02869 1.01265 0.95983 1.45770 1.14624 1.06350 1.69735 1.18258 0.81551 0.88744 0.77041 1.90773 1.47808 1.51974 1.48862 1.19128 0.94669 0.91970 1.12835 1.20923 0.97103 0.92780 0.96847 1.20624 0.97265 0.95340 1.08201 1.21065 0.93488 0.98467 0.97030 1.21415 1.00787 0.91811 1.04072 1.23093 0.98088 0.99519 0.96980 1.84789 1.03639 1.03779 1.63154 1.24064 1.02127 0.98956 1.49068 0.89245 1.25087 0.97987 0.95391 0.94293 1.69979 1.24882 1.10972 1.43295 0.86171 0.79836 0.80284 0.79380 1.19928 1.20517 1.19282 0.87859 0.90490 0.90369 0.93926 0.92169 0.77142 0.91190 0.91085 0.92723 0.76034 0.86954 0.87290 0.87207 0.84511 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.78 10.47 101.05 1.06 0.27 16 2 S -0.22 -2.04 20.60 -107.50 -2.21 -4.26 16 3 C -0.07 -0.70 2.35 -26.73 -0.06 -0.77 16 4 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 5 C 0.08 0.75 6.38 37.16 0.24 0.99 16 6 O -0.56 -5.26 10.20 -35.23 -0.36 -5.62 16 7 C 0.17 2.32 2.16 -67.93 -0.15 2.18 16 8 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 9 C -0.17 -2.16 9.31 37.16 0.35 -1.81 16 10 N -0.71 -10.51 3.49 -54.87 -0.19 -10.71 16 11 C 0.56 10.99 7.71 -12.52 -0.10 10.90 16 12 O -0.52 -12.29 13.43 5.27 0.07 -12.22 16 13 C -0.17 -3.44 5.89 -104.75 -0.62 -4.06 16 14 C -0.06 -0.92 9.53 -39.20 -0.37 -1.29 16 15 C -0.19 -2.98 10.02 -39.59 -0.40 -3.38 16 16 C -0.08 -1.37 10.03 -39.54 -0.40 -1.77 16 17 C -0.16 -3.32 9.22 -39.38 -0.36 -3.68 16 18 C -0.06 -1.32 6.14 -38.40 -0.24 -1.56 16 19 S 0.18 4.97 18.56 -107.50 -2.00 2.98 16 20 C -0.60 -16.67 9.00 30.94 0.28 -16.39 16 21 H 0.09 2.38 4.98 -52.49 -0.26 2.12 16 22 C 0.08 2.31 5.49 -17.46 -0.10 2.22 16 23 N -0.86 -25.10 13.22 55.49 0.73 -24.36 16 24 Si 0.92 20.97 29.55 -169.99 -5.02 15.94 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 28 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.08 0.39 7.29 -51.92 -0.38 0.01 16 30 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.04 0.29 7.15 -51.93 -0.37 -0.08 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.38 2.35 9.12 45.56 0.42 2.76 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.85 7.13 -51.93 -0.37 0.48 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.40 5.16 4.93 -40.82 -0.20 4.96 16 38 H 0.11 1.46 6.40 -52.49 -0.34 1.12 16 39 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 40 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.14 3.05 5.04 -52.49 -0.26 2.78 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -33.02 366.99 -8.99 -42.02 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.68 Total: 8.87 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -0.87 Total: -18.16 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.54 Total: -35.07 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.29 Total: -17.84 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -4.21 Total: -1.28 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.02 -8.99 -42.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230352883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.432 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds