Wall clock time and date at job start Sat Apr 11 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81400 * 103.00023 * 2 1 4 4 H 1.09000 * 109.47016 * 305.00041 * 3 2 1 5 5 C 1.52997 * 109.47083 * 64.99832 * 3 2 1 6 6 O 1.42898 * 109.46763 * 174.99751 * 5 3 2 7 7 C 1.53000 * 109.46878 * 185.00224 * 3 2 1 8 8 H 1.09002 * 109.46790 * 304.99512 * 7 3 2 9 9 C 1.53004 * 109.47512 * 64.99780 * 7 3 2 10 10 N 1.46505 * 109.47054 * 185.00118 * 7 3 2 11 11 C 1.34774 * 120.00150 * 154.99664 * 10 7 3 12 12 O 1.21611 * 119.99964 * 359.97438 * 11 10 7 13 13 C 1.47433 * 119.99869 * 179.97438 * 11 10 7 14 14 C 1.39681 * 120.21363 * 0.02930 * 13 11 10 15 15 C 1.37805 * 119.93452 * 179.97438 * 14 13 11 16 16 C 1.38654 * 120.38625 * 0.02562 * 15 14 13 17 17 C 1.37919 * 120.43362 * 0.02562 * 16 15 14 18 18 C 1.39103 * 120.05168 * 359.97438 * 17 16 15 19 19 S 1.76206 * 120.18762 * 180.02562 * 18 17 16 20 20 C 1.76190 * 99.99940 * 6.84043 * 19 18 17 21 21 H 1.07998 * 120.00270 * 5.65109 * 20 19 18 22 22 C 1.38809 * 120.00047 * 185.65490 * 20 19 18 23 23 N 1.31555 * 120.00018 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00216 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00065 * 24 22 20 26 26 H 1.48500 * 109.46864 * 209.99830 * 24 22 20 27 27 H 1.48502 * 109.47056 * 329.99897 * 24 22 20 28 28 H 1.09005 * 109.46760 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47114 * 299.99911 * 1 2 3 30 30 H 1.09001 * 109.46833 * 60.00535 * 1 2 3 31 31 H 1.08996 * 109.47021 * 295.00318 * 5 3 2 32 32 H 1.09006 * 109.46963 * 55.00469 * 5 3 2 33 33 H 0.96699 * 113.99770 * 179.97438 * 6 5 3 34 34 H 1.08996 * 109.46954 * 179.97438 * 9 7 3 35 35 H 1.09000 * 109.46661 * 300.00162 * 9 7 3 36 36 H 1.09003 * 109.46425 * 60.00258 * 9 7 3 37 37 H 0.97000 * 119.99614 * 334.99878 * 10 7 3 38 38 H 1.07997 * 120.03131 * 359.97438 * 14 13 11 39 39 H 1.08008 * 119.80557 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.78248 * 180.28485 * 16 15 14 41 41 H 1.07998 * 119.97190 * 179.97438 * 17 16 15 42 42 H 0.96996 * 120.00225 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 8 2.1662 3.7654 1.3584 7 6 3.7370 1.9411 -0.1258 8 1 4.2339 1.3803 0.6659 9 6 4.1989 1.4190 -1.4878 10 7 4.0774 3.3610 -0.0060 11 6 5.3046 3.7266 0.4146 12 8 6.1291 2.8779 0.6952 13 6 5.6473 5.1556 0.5346 14 6 4.7034 6.1341 0.2142 15 6 5.0297 7.4680 0.3289 16 6 6.2917 7.8467 0.7608 17 6 7.2359 6.8936 1.0804 18 6 6.9259 5.5419 0.9712 19 16 8.1294 4.3212 1.3791 20 6 9.4000 5.3511 2.0340 21 1 9.2257 6.4093 2.1610 22 6 10.6253 4.8024 2.3867 23 7 10.8376 3.5133 2.2324 24 14 11.9729 5.8944 3.0804 25 1 11.8525 5.9501 4.5595 26 1 13.2995 5.3378 2.7124 27 1 11.8378 7.2633 2.5208 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.6548 2.3568 1.3553 32 1 2.1665 1.8577 2.1516 33 1 1.8964 4.2311 2.1618 34 1 5.2781 1.5431 -1.5775 35 1 3.9456 0.3626 -1.5768 36 1 3.7020 1.9799 -2.2794 37 1 3.4196 4.0379 -0.2294 38 1 3.7189 5.8455 -0.1232 39 1 4.2981 8.2229 0.0810 40 1 6.5355 8.8949 0.8516 41 1 8.2167 7.1969 1.4157 42 1 11.6940 3.1299 2.4785 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230352883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:40 Heat of formation + Delta-G solvation = -74.652062 kcal Electronic energy + Delta-G solvation = -25141.894956 eV Core-core repulsion = 21531.816432 eV Total energy + Delta-G solvation = -3610.078524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06775 -39.21211 -38.24957 -36.22461 -34.74629 -33.38665 -31.73842 -31.52784 -30.40838 -29.22208 -27.81990 -25.28668 -24.18977 -23.40319 -22.24512 -21.44988 -19.95806 -18.91583 -18.36413 -17.52423 -17.25543 -17.03462 -16.75244 -16.30323 -15.91905 -15.53617 -15.52977 -15.42138 -15.21252 -14.70166 -14.53844 -14.37053 -14.28024 -13.80978 -13.66125 -13.42160 -13.28059 -13.06522 -12.99619 -12.97307 -12.82270 -12.51625 -12.27915 -12.04337 -11.98845 -11.45027 -11.38206 -11.22989 -11.05544 -10.82189 -10.37469 -9.97707 -9.83122 -9.66914 -8.73943 -8.43346 -8.42564 -6.21738 0.10730 0.48552 0.58840 1.27070 1.36547 1.45438 1.54728 1.68124 2.12905 2.21894 2.47245 2.89874 3.10364 3.27670 3.32013 3.41102 3.96217 4.04783 4.07545 4.13380 4.29607 4.32211 4.36364 4.39110 4.41363 4.53062 4.66378 4.67374 4.74265 4.82270 4.90269 4.94499 5.00364 5.17035 5.24814 5.40625 5.50945 5.62323 5.67747 5.71364 6.12754 6.20359 6.77817 6.92323 6.97643 7.53336 8.62347 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.003121 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.197984 B = 8970.561244 C =10170.255438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.264 6.264 3 C -0.057 4.057 4 H 0.116 0.884 5 C 0.088 3.912 6 O -0.575 6.575 7 C 0.170 3.830 8 H 0.056 0.944 9 C -0.158 4.158 10 N -0.681 5.681 11 C 0.548 3.452 12 O -0.565 6.565 13 C -0.175 4.175 14 C -0.047 4.047 15 C -0.158 4.158 16 C -0.071 4.071 17 C -0.177 4.177 18 C -0.073 4.073 19 S 0.060 5.940 20 C -0.601 4.601 21 H 0.094 0.906 22 C 0.023 3.977 23 N -0.906 5.906 24 Si 0.993 3.007 25 H -0.266 1.266 26 H -0.273 1.273 27 H -0.257 1.257 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.396 0.604 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.415 0.585 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.148 0.852 41 H 0.117 0.883 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.230 2.059 -5.353 26.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.038 6.038 3 C -0.186 4.186 4 H 0.134 0.866 5 C 0.007 3.993 6 O -0.384 6.384 7 C 0.064 3.936 8 H 0.074 0.926 9 C -0.217 4.217 10 N -0.337 5.337 11 C 0.336 3.664 12 O -0.446 6.446 13 C -0.188 4.188 14 C -0.067 4.067 15 C -0.181 4.181 16 C -0.092 4.092 17 C -0.202 4.202 18 C -0.191 4.191 19 S 0.319 5.681 20 C -0.748 4.748 21 H 0.111 0.889 22 C -0.182 4.182 23 N -0.541 5.541 24 Si 0.814 3.186 25 H -0.191 1.191 26 H -0.198 1.198 27 H -0.181 1.181 28 H 0.132 0.868 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.247 0.753 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.257 0.743 38 H 0.175 0.825 39 H 0.182 0.818 40 H 0.166 0.834 41 H 0.135 0.865 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.390 -1.153 -5.754 25.086 hybrid contribution 0.188 2.707 1.157 2.950 sum -24.202 1.554 -4.596 24.684 Atomic orbital electron populations 1.23562 0.90837 1.07834 1.06321 1.87373 1.10773 1.07862 1.97822 1.23384 0.97675 0.95214 1.02305 0.86565 1.22399 0.98648 0.83235 0.94970 1.86340 1.81284 1.23469 1.47296 1.20384 0.92349 0.82657 0.98190 0.92595 1.22195 1.00609 1.02431 0.96440 1.45538 1.13053 1.07537 1.67560 1.18467 0.82481 0.88532 0.76899 1.90775 1.49598 1.53152 1.51060 1.19493 0.94316 0.93263 1.11759 1.21397 0.97823 0.92297 0.95203 1.21305 0.97032 0.96103 1.03642 1.21516 0.93191 0.99457 0.95030 1.21427 1.01356 0.91892 1.05537 1.22982 0.97978 0.99024 0.99100 1.84990 1.07173 1.07703 1.68244 1.24254 1.02407 0.98885 1.49256 0.88875 1.26157 1.00531 0.96844 0.94712 1.70141 1.25525 1.13048 1.45419 0.85039 0.76409 0.78418 0.78704 1.19109 1.19806 1.18113 0.86795 0.89162 0.88917 0.90673 0.94000 0.75316 0.94838 0.90077 0.90502 0.74343 0.82507 0.81772 0.83406 0.86542 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.47 113.37 1.19 0.19 16 2 S -0.26 -4.67 20.60 -56.49 -1.16 -5.83 16 3 C -0.06 -1.01 2.35 30.59 0.07 -0.94 16 4 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 5 C 0.09 1.33 6.38 71.98 0.46 1.79 16 6 O -0.57 -8.95 10.20 -148.98 -1.52 -10.47 16 7 C 0.17 4.61 2.16 44.99 0.10 4.71 16 8 H 0.06 1.96 7.58 -2.39 -0.02 1.95 16 9 C -0.16 -4.20 9.31 71.98 0.67 -3.53 16 10 N -0.68 -19.63 3.49 -445.77 -1.56 -21.19 16 11 C 0.55 22.34 7.71 86.67 0.67 23.00 16 12 O -0.56 -29.23 13.43 -4.06 -0.05 -29.28 16 13 C -0.17 -6.98 5.89 -19.95 -0.12 -7.09 16 14 C -0.05 -1.32 9.53 22.52 0.21 -1.11 16 15 C -0.16 -3.97 10.02 22.27 0.22 -3.74 16 16 C -0.07 -2.19 10.03 22.29 0.22 -1.97 16 17 C -0.18 -7.55 9.22 22.40 0.21 -7.34 16 18 C -0.07 -3.51 6.14 23.04 0.14 -3.37 16 19 S 0.06 3.60 18.56 -56.49 -1.05 2.55 16 20 C -0.60 -36.02 9.00 67.96 0.61 -35.41 16 21 H 0.09 5.26 4.98 -2.91 -0.01 5.24 16 22 C 0.02 1.35 5.49 84.87 0.47 1.81 16 23 N -0.91 -56.88 13.22 21.65 0.29 -56.59 16 24 Si 0.99 44.91 29.55 68.60 2.03 46.94 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 28 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 0.56 7.29 -2.39 -0.02 0.54 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.70 7.15 -2.39 -0.02 0.68 16 32 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.40 3.54 9.12 -74.06 -0.68 2.86 16 34 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.98 7.13 -2.39 -0.02 1.96 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.42 9.31 4.93 -92.71 -0.46 8.86 16 38 H 0.16 3.03 6.40 -2.91 -0.02 3.01 16 39 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.12 5.39 5.04 -2.91 -0.01 5.37 16 42 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -83.13 366.99 2.03 -81.10 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.06 Total: 25.77 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 5.12 Total: -32.99 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -1.27 Total: -77.78 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.57 Total: -39.75 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.21 Total: -3.28 kcal Total: -83.13 2.03 -81.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230352883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.445 kcal (2) G-P(sol) polarization free energy of solvation -83.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds