Wall clock time and date at job start Sat Apr 11 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35657 * 116.99930 * 2 1 4 4 C 1.38646 * 120.14320 * 0.02562 * 3 2 1 5 5 C 1.38201 * 120.07218 * 179.97438 * 4 3 2 6 6 Cl 1.73598 * 119.81832 * 179.97438 * 5 4 3 7 7 C 1.38700 * 120.36347 * 359.97438 * 5 4 3 8 8 C 1.37728 * 120.28454 * 359.73741 * 7 5 4 9 9 C 1.39744 * 119.92367 * 0.53633 * 8 7 5 10 10 C 1.47474 * 120.18357 * 179.74313 * 9 8 7 11 11 O 1.21593 * 120.00199 * 179.72391 * 10 9 8 12 12 N 1.34777 * 119.99537 * 359.72080 * 10 9 8 13 13 N 1.40109 * 119.99659 * 179.72165 * 12 10 9 14 14 C 1.34774 * 119.99481 * 180.27982 * 13 12 10 15 15 O 1.21593 * 119.99194 * 180.02562 * 14 13 12 16 16 N 1.34774 * 120.00548 * 0.02562 * 14 13 12 17 17 C 1.46499 * 119.99899 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47073 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47500 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99776 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00239 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00041 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99847 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46986 * 90.00259 * 23 21 19 25 25 H 1.48501 * 109.46810 * 209.99644 * 23 21 19 26 26 H 1.48492 * 109.47096 * 329.99997 * 23 21 19 27 27 H 1.09001 * 109.47002 * 300.00067 * 1 2 3 28 28 H 1.08996 * 109.46805 * 59.99851 * 1 2 3 29 29 H 1.08997 * 109.46920 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.96145 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.85751 * 180.02562 * 7 5 4 32 32 H 1.08001 * 120.03826 * 180.28131 * 8 7 5 33 33 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 34 34 H 0.97000 * 119.99800 * 0.27836 * 13 12 10 35 35 H 0.96996 * 120.00143 * 0.02562 * 16 14 13 36 36 H 1.08998 * 109.47134 * 299.99549 * 17 16 14 37 37 H 1.08994 * 109.47397 * 59.99841 * 17 16 14 38 38 H 1.09005 * 109.47338 * 300.00205 * 18 17 16 39 39 H 1.09007 * 109.46922 * 59.99533 * 18 17 16 40 40 H 0.97001 * 120.00302 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3734 0.0005 5 6 1.9216 3.6040 0.0011 6 17 0.9733 5.0581 0.0011 7 6 3.3063 3.6837 0.0016 8 6 4.0681 2.5362 0.0071 9 6 3.4446 1.2856 0.0008 10 6 4.2547 0.0532 0.0008 11 8 3.7088 -1.0332 0.0004 12 7 5.6002 0.1314 0.0013 13 7 6.3698 -1.0394 0.0073 14 6 7.7153 -0.9611 0.0135 15 8 8.3832 -1.9772 0.0182 16 7 8.3204 0.2431 0.0144 17 6 9.7829 0.3280 0.0206 18 6 10.2085 1.7976 0.0198 19 6 11.7130 1.8850 0.0268 20 1 12.3063 0.9825 0.0309 21 6 12.3320 3.1169 0.0279 22 7 13.6449 3.1932 0.0345 23 14 11.3058 4.6778 0.0200 24 1 11.0268 5.0938 1.4180 25 1 12.0507 5.7564 -0.6780 26 1 10.0244 4.4242 -0.6861 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2141 2.3188 0.0005 31 1 3.7893 4.6496 0.0024 32 1 5.1460 2.6029 0.0121 33 1 6.0357 0.9981 0.0020 34 1 5.9343 -1.9061 0.0070 35 1 7.7876 1.0536 0.0111 36 1 10.1716 -0.1627 0.9129 37 1 10.1793 -0.1652 -0.8669 38 1 9.8199 2.2880 -0.8728 39 1 9.8121 2.2911 0.9072 40 1 14.0805 4.0599 0.0356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273561238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:02 Heat of formation + Delta-G solvation = -65.132911 kcal Electronic energy + Delta-G solvation = -26269.280901 eV Core-core repulsion = 22111.278237 eV Total energy + Delta-G solvation = -4158.002664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.00780 -41.24684 -39.98156 -38.74595 -37.38544 -36.87159 -36.73267 -34.72659 -33.28511 -31.96242 -31.39282 -31.00268 -28.23063 -26.82614 -25.24457 -23.46589 -23.04028 -22.35986 -22.12213 -20.48336 -19.42595 -18.96631 -18.78537 -17.62757 -17.44926 -17.12912 -16.83299 -16.51278 -16.29098 -16.22533 -15.98285 -15.97202 -15.42704 -15.11853 -14.99715 -14.81116 -14.55040 -14.35629 -13.62854 -13.30727 -13.08296 -13.00064 -12.88971 -12.54651 -12.43241 -12.24275 -12.12746 -12.04940 -11.88306 -11.75780 -11.70016 -11.43103 -11.23305 -10.73732 -10.28937 -10.13528 -9.56353 -9.31671 -8.24341 -6.32193 -0.52828 0.16996 0.66170 0.92998 1.44546 1.48381 1.49679 1.59080 1.92607 1.95064 2.18097 2.42900 2.55226 3.11198 3.17927 3.54410 3.81851 3.85029 3.95477 4.20972 4.26263 4.32593 4.35694 4.43744 4.48386 4.67651 4.75781 4.79304 4.97526 5.04047 5.05619 5.26767 5.35470 5.38345 5.46238 5.56300 5.66939 6.14140 6.25147 6.27569 6.57857 6.76446 7.14042 7.31380 7.34001 8.92422 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.002752 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.997514 B =10173.539616 C =12842.777853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.305 6.305 3 C 0.191 3.809 4 C -0.211 4.211 5 C 0.031 3.969 6 Cl -0.051 7.051 7 C -0.153 4.153 8 C -0.025 4.025 9 C -0.182 4.182 10 C 0.566 3.434 11 O -0.549 6.549 12 N -0.514 5.514 13 N -0.527 5.527 14 C 0.712 3.288 15 O -0.616 6.616 16 N -0.724 5.724 17 C 0.160 3.840 18 C -0.013 4.013 19 C -0.538 4.538 20 H 0.027 0.973 21 C 0.000 4.000 22 N -0.954 5.954 23 Si 0.960 3.040 24 H -0.265 1.265 25 H -0.293 1.293 26 H -0.226 1.226 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.432 0.568 34 H 0.441 0.559 35 H 0.406 0.594 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.331 5.547 -0.149 34.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.217 6.217 3 C 0.142 3.858 4 C -0.230 4.230 5 C 0.003 3.997 6 Cl -0.022 7.022 7 C -0.172 4.172 8 C -0.044 4.044 9 C -0.187 4.187 10 C 0.355 3.645 11 O -0.426 6.426 12 N -0.268 5.268 13 N -0.282 5.282 14 C 0.411 3.589 15 O -0.492 6.492 16 N -0.381 5.381 17 C 0.036 3.964 18 C -0.051 4.051 19 C -0.577 4.577 20 H 0.046 0.954 21 C -0.197 4.197 22 N -0.594 5.594 23 Si 0.782 3.218 24 H -0.190 1.190 25 H -0.219 1.219 26 H -0.148 1.148 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.132 0.868 30 H 0.182 0.818 31 H 0.185 0.815 32 H 0.189 0.811 33 H 0.277 0.723 34 H 0.286 0.714 35 H 0.243 0.757 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -33.963 4.178 -0.152 34.219 hybrid contribution -0.080 0.905 0.031 0.909 sum -34.042 5.082 -0.120 34.420 Atomic orbital electron populations 1.23515 0.76191 1.05887 1.02923 1.86374 1.23497 1.25445 1.86336 1.18966 0.90680 0.85168 0.91028 1.21210 1.02003 0.89561 1.10219 1.21080 0.92599 0.87688 0.98305 1.98417 1.72156 1.35321 1.96285 1.21214 0.91101 1.00764 1.04082 1.21433 1.01642 0.88971 0.92369 1.19059 0.90635 0.92914 1.16093 1.18273 0.79863 0.89836 0.76493 1.90853 1.71366 1.29845 1.50525 1.44719 1.03473 1.01461 1.77169 1.44379 1.00630 1.02313 1.80908 1.15769 0.80262 0.84659 0.78164 1.91003 1.61691 1.36056 1.60500 1.45106 1.08352 1.06070 1.78533 1.21046 0.76279 0.98625 1.00498 1.19678 0.94587 0.92227 0.98586 1.21246 0.91799 0.93193 1.51437 0.95439 1.26144 0.96144 1.03666 0.93706 1.70091 1.10901 1.26295 1.52106 0.85534 0.80024 0.76921 0.79366 1.18983 1.21903 1.14812 0.90782 0.90789 0.86841 0.81774 0.81505 0.81107 0.72301 0.71354 0.75734 0.93404 0.93400 0.93859 0.94037 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.31 -5.79 8.57 -68.80 -0.59 -6.38 16 3 C 0.19 3.16 6.70 22.84 0.15 3.31 16 4 C -0.21 -2.46 8.80 22.36 0.20 -2.26 16 5 C 0.03 0.34 6.32 22.37 0.14 0.48 16 6 Cl -0.05 -0.53 28.94 -2.72 -0.08 -0.61 16 7 C -0.15 -1.41 9.80 22.26 0.22 -1.19 16 8 C -0.03 -0.25 9.53 22.51 0.21 -0.04 16 9 C -0.18 -2.99 5.89 -20.01 -0.12 -3.10 16 10 C 0.57 12.31 7.88 86.68 0.68 12.99 16 11 O -0.55 -16.10 15.00 16.92 0.25 -15.85 16 12 N -0.51 -9.72 6.21 -175.86 -1.09 -10.81 16 13 N -0.53 -13.35 6.26 -184.75 -1.16 -14.50 16 14 C 0.71 22.51 8.68 179.06 1.55 24.07 16 15 O -0.62 -25.27 17.18 -4.01 -0.07 -25.34 16 16 N -0.72 -20.66 5.52 -478.54 -2.64 -23.30 16 17 C 0.16 6.02 5.61 86.38 0.48 6.51 16 18 C -0.01 -0.52 4.16 29.85 0.12 -0.40 16 19 C -0.54 -29.29 9.66 25.60 0.25 -29.04 16 20 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 21 C 0.00 0.01 5.47 84.65 0.46 0.47 16 22 N -0.95 -58.13 13.96 21.45 0.30 -57.83 16 23 Si 0.96 39.45 27.47 68.60 1.88 41.33 16 24 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 25 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.23 -7.76 6.54 99.48 0.65 -7.11 16 27 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 28 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.16 1.22 6.30 -2.91 -0.02 1.20 16 31 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 32 H 0.17 0.62 6.40 -2.91 -0.02 0.60 16 33 H 0.43 5.35 4.73 -213.31 -1.01 4.34 16 34 H 0.44 11.63 8.10 -213.31 -1.73 9.90 16 35 H 0.41 8.13 6.39 -92.71 -0.59 7.53 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.04 1.60 7.20 -2.38 -0.02 1.58 16 39 H 0.04 1.51 7.57 -2.38 -0.02 1.49 16 40 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -79.66 358.96 0.04 -79.63 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -2.25 Total: 20.68 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.47 Total: 12.98 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -4.59 Total: -106.45 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.40 Total: -47.57 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.88 Total: 41.33 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -79.66 0.04 -79.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273561238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.496 kcal (2) G-P(sol) polarization free energy of solvation -79.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds