Wall clock time and date at job start Sat Apr 11 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47378 * 2 1 4 4 C 1.36939 * 119.99973 * 84.28989 * 3 2 1 5 5 H 1.07998 * 119.99576 * 167.52379 * 4 3 2 6 6 C 1.38804 * 119.99882 * 347.52471 * 4 3 2 7 7 N 1.31627 * 120.00365 * 7.09282 * 6 4 3 8 8 Si 1.86808 * 120.00131 * 187.09175 * 6 4 3 9 9 H 1.48499 * 109.46638 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47117 * 119.99930 * 8 6 4 11 11 H 1.48499 * 109.47225 * 240.00058 * 8 6 4 12 12 C 1.46502 * 119.99992 * 264.29125 * 3 2 1 13 13 H 1.08998 * 109.46885 * 173.95861 * 12 3 2 14 14 C 1.52997 * 109.46965 * 53.96112 * 12 3 2 15 15 C 1.50702 * 109.47015 * 293.95900 * 12 3 2 16 16 O 1.21287 * 119.99788 * 15.45136 * 15 12 3 17 17 N 1.34777 * 119.99770 * 195.44556 * 15 12 3 18 18 C 1.39977 * 119.99957 * 185.76634 * 17 15 12 19 19 C 1.38850 * 120.07430 * 17.66103 * 18 17 15 20 20 C 1.38114 * 119.94127 * 179.76978 * 19 18 17 21 21 N 1.48021 * 119.95441 * 180.22913 * 20 19 18 22 22 O 1.21802 * 120.00183 * 180.24810 * 21 20 19 23 23 O 1.21804 * 119.99986 * 0.24947 * 21 20 19 24 24 C 1.38293 * 120.09730 * 0.47757 * 20 19 18 25 25 C 1.38263 * 120.14480 * 359.77518 * 24 20 19 26 26 C 1.38234 * 120.05605 * 359.97438 * 25 24 20 27 27 Cl 1.73607 * 120.04327 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.47429 * 300.92246 * 1 2 3 29 29 H 1.09006 * 109.47129 * 60.91783 * 1 2 3 30 30 H 1.09004 * 109.47529 * 180.91544 * 1 2 3 31 31 H 1.09002 * 109.46853 * 120.00164 * 2 1 3 32 32 H 1.09003 * 109.46923 * 239.99830 * 2 1 3 33 33 H 0.96998 * 120.00156 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47114 * 299.99608 * 14 12 3 35 35 H 1.08999 * 109.47387 * 59.99965 * 14 12 3 36 36 H 1.09001 * 109.47133 * 179.97438 * 14 12 3 37 37 H 0.96998 * 119.99782 * 5.77123 * 17 15 12 38 38 H 1.08002 * 120.02728 * 359.97438 * 19 18 17 39 39 H 1.07995 * 119.93077 * 179.74537 * 24 20 19 40 40 H 1.08000 * 119.97490 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1354 2.0660 1.1800 5 1 2.6776 2.9995 1.2111 6 6 1.5571 1.5604 2.3362 7 7 1.0180 0.3596 2.3316 8 14 1.5441 2.5840 3.8988 9 1 2.2079 3.8874 3.6421 10 1 0.1410 2.8191 4.3249 11 1 2.2723 1.8597 4.9712 12 6 2.3815 2.0297 -1.2625 13 1 2.6173 3.0777 -1.0778 14 6 1.2085 1.9354 -2.2401 15 6 3.5846 1.3407 -1.8532 16 8 3.9198 0.2491 -1.4444 17 7 4.2879 1.9375 -2.8359 18 6 5.3303 1.2493 -3.4677 19 6 5.4157 -0.1326 -3.3630 20 6 6.4427 -0.8094 -3.9915 21 7 6.5311 -2.2831 -3.8843 22 8 7.4390 -2.8803 -4.4345 23 8 5.6960 -2.8985 -3.2460 24 6 7.3914 -0.1118 -4.7166 25 6 7.3130 1.2648 -4.8189 26 6 6.2848 1.9479 -4.1967 27 17 6.1871 3.6765 -4.3249 28 1 -0.3634 0.5281 0.8816 29 1 -0.3634 0.4995 -0.8981 30 1 -0.3634 -1.0275 0.0164 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 0.6136 0.0064 3.1395 34 1 0.9728 0.8873 -2.4248 35 1 0.3383 2.4337 -1.8128 36 1 1.4785 2.4183 -3.1793 37 1 4.0719 2.8439 -3.1052 38 1 4.6779 -0.6781 -2.7934 39 1 8.1956 -0.6433 -5.2035 40 1 8.0556 1.8070 -5.3855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299339037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:43 Heat of formation + Delta-G solvation = 32.544657 kcal Electronic energy + Delta-G solvation = -27850.563480 eV Core-core repulsion = 23696.796434 eV Total energy + Delta-G solvation = -4153.767046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.22281 -40.80956 -38.96404 -37.08140 -36.56650 -36.22806 -34.91327 -32.54211 -31.92576 -30.48778 -29.51555 -28.63617 -26.65657 -24.69810 -23.99337 -22.97307 -22.24568 -21.08773 -19.81896 -19.43633 -18.61740 -17.53801 -17.39200 -17.24715 -16.78329 -16.52931 -15.63293 -15.20073 -14.96879 -14.29813 -14.17665 -13.82288 -13.68395 -13.27131 -13.14343 -12.77161 -12.31016 -12.19814 -12.04719 -11.91703 -11.63838 -11.48620 -11.38602 -11.24200 -11.18127 -11.11503 -10.98714 -10.82384 -10.73682 -10.46357 -9.98704 -9.82566 -9.67615 -9.56559 -9.17086 -8.51805 -8.37768 -6.95680 -5.69810 -3.24771 -0.38837 0.62108 1.12333 1.23848 1.50838 2.64798 2.80602 3.13377 3.32568 3.38608 3.41001 4.03831 4.35230 4.36180 4.45878 4.49707 4.87812 5.15206 5.19471 5.29281 5.35969 5.42506 5.57700 5.64323 5.73920 5.79531 6.02676 6.24883 6.28301 6.41038 6.59928 6.76713 7.02866 7.14706 7.25455 7.31377 7.57465 7.62226 7.93841 8.16878 8.26521 8.46258 9.17757 9.73546 10.15151 11.19216 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.003584 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.784433 B = 7810.097713 C = 9029.216944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.168 3.832 3 N -0.567 5.567 4 C -0.257 4.257 5 H 0.074 0.926 6 C 0.001 3.999 7 N -0.894 5.894 8 Si 0.911 3.089 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.163 3.837 13 H 0.090 0.910 14 C -0.153 4.153 15 C 0.486 3.514 16 O -0.489 6.489 17 N -0.672 5.672 18 C 0.184 3.816 19 C -0.079 4.079 20 C -0.015 4.015 21 N 0.027 4.973 22 O -0.163 6.163 23 O -0.142 6.142 24 C -0.083 4.083 25 C -0.083 4.083 26 C -0.044 4.044 27 Cl -0.041 7.041 28 H 0.085 0.915 29 H 0.007 0.993 30 H 0.018 0.982 31 H 0.103 0.897 32 H 0.011 0.989 33 H 0.251 0.749 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.415 0.585 38 H 0.198 0.802 39 H 0.159 0.841 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.023 5.794 -16.620 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.044 3.956 3 N -0.285 5.285 4 C -0.385 4.385 5 H 0.092 0.908 6 C -0.196 4.196 7 N -0.540 5.540 8 Si 0.742 3.258 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.048 3.952 13 H 0.108 0.892 14 C -0.213 4.213 15 C 0.273 3.727 16 O -0.360 6.360 17 N -0.318 5.318 18 C 0.084 3.916 19 C -0.100 4.100 20 C -0.099 4.099 21 N 0.548 4.452 22 O -0.378 6.378 23 O -0.361 6.361 24 C -0.104 4.104 25 C -0.103 4.103 26 C -0.075 4.075 27 Cl -0.012 7.012 28 H 0.103 0.897 29 H 0.026 0.974 30 H 0.037 0.963 31 H 0.120 0.880 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.252 0.748 38 H 0.214 0.786 39 H 0.177 0.823 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.985 5.793 -16.074 19.305 hybrid contribution 0.053 0.769 0.632 0.997 sum 9.037 6.562 -15.443 19.058 Atomic orbital electron populations 1.22561 0.99333 0.98199 1.00175 1.21036 0.91852 0.83203 0.99503 1.44100 1.72888 1.11938 0.99618 1.19362 1.29098 1.03827 0.86232 0.90826 1.24869 0.99376 0.97010 0.98301 1.70255 1.42035 1.15143 1.26613 0.86075 0.77340 0.79317 0.83111 1.20544 1.21512 1.21706 1.20239 0.89532 0.96531 0.88917 0.89244 1.22274 0.99072 1.02651 0.97263 1.24170 0.85003 0.87095 0.76388 1.90545 1.67157 1.20678 1.57655 1.44570 1.31710 1.18883 1.36659 1.17462 0.89741 0.90327 0.94092 1.21729 0.98438 0.92708 0.97125 1.21015 1.01721 0.80247 1.06881 1.43523 0.99708 1.03301 0.98650 1.94505 1.27001 1.69468 1.46795 1.94631 1.34947 1.67841 1.38689 1.20853 0.98347 0.93677 0.97485 1.20799 0.97337 0.92652 0.99504 1.21017 0.97062 0.86066 1.03363 1.98402 1.97668 1.08339 1.96799 0.89678 0.97440 0.96295 0.87967 0.97096 0.93765 0.92081 0.90825 0.93584 0.74773 0.78583 0.82325 0.82475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.25 37.16 0.34 -2.97 16 2 C 0.17 4.09 4.30 -4.05 -0.02 4.07 16 3 N -0.57 -13.23 2.27 -166.99 -0.38 -13.61 16 4 C -0.26 -6.55 9.73 -15.06 -0.15 -6.70 16 5 H 0.07 1.81 7.74 -52.49 -0.41 1.41 16 6 C 0.00 0.04 5.21 -17.43 -0.09 -0.05 16 7 N -0.89 -24.27 7.31 55.49 0.41 -23.87 16 8 Si 0.91 20.91 29.56 -169.99 -5.02 15.89 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.16 2.93 3.10 -69.08 -0.21 2.72 16 13 H 0.09 1.46 7.83 -51.93 -0.41 1.05 16 14 C -0.15 -2.34 8.02 37.16 0.30 -2.05 16 15 C 0.49 8.43 6.84 -10.98 -0.08 8.35 16 16 O -0.49 -10.31 11.38 5.55 0.06 -10.24 16 17 N -0.67 -8.79 5.27 -9.84 -0.05 -8.84 16 18 C 0.18 2.36 6.52 -83.65 -0.55 1.81 16 19 C -0.08 -1.16 8.32 -39.40 -0.33 -1.49 16 20 C -0.02 -0.20 6.85 -79.97 -0.55 -0.75 16 21 N 0.03 0.42 4.45 33.95 0.15 0.57 16 22 O -0.16 -2.43 18.44 -29.46 -0.54 -2.98 16 23 O -0.14 -2.49 18.44 -29.46 -0.54 -3.03 16 24 C -0.08 -0.81 9.55 -39.55 -0.38 -1.19 16 25 C -0.08 -0.68 9.82 -39.57 -0.39 -1.07 16 26 C -0.04 -0.44 6.34 -39.32 -0.25 -0.69 16 27 Cl -0.04 -0.35 27.70 -51.86 -1.44 -1.78 16 28 H 0.08 2.19 5.90 -51.93 -0.31 1.88 16 29 H 0.01 0.14 6.09 -51.93 -0.32 -0.18 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 2.88 5.90 -51.93 -0.31 2.57 16 32 H 0.01 0.26 6.27 -51.93 -0.33 -0.07 16 33 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.06 1.02 6.61 -51.93 -0.34 0.67 16 35 H 0.07 1.17 7.95 -51.93 -0.41 0.76 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.41 4.25 7.59 -40.82 -0.31 3.94 16 38 H 0.20 3.48 4.84 -52.51 -0.25 3.22 16 39 H 0.16 1.21 7.60 -52.49 -0.40 0.81 16 40 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 346.99 15.07 5.23 5.23 Total: -1.00 -29.70 346.99 -8.66 -38.36 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.19 Total: 4.31 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.34 Total: 0.00 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.13 Total: -45.75 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -1.02 Total: -16.25 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.44 Total: -1.78 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.70 -8.66 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299339037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.905 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds