Wall clock time and date at job start Sat Apr 11 2020 06:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46500 * 109.47189 * 2 1 4 4 C 1.36933 * 120.00892 * 276.11814 * 3 2 1 5 5 H 1.08003 * 119.99599 * 27.57882 * 4 3 2 6 6 C 1.38805 * 120.00664 * 207.58219 * 4 3 2 7 7 N 1.31627 * 119.99591 * 21.16594 * 6 4 3 8 8 Si 1.86803 * 120.00289 * 201.16205 * 6 4 3 9 9 H 1.48505 * 109.46827 * 94.98960 * 8 6 4 10 10 H 1.48501 * 109.47229 * 214.98687 * 8 6 4 11 11 H 1.48500 * 109.47225 * 334.99188 * 8 6 4 12 12 C 1.46505 * 119.99688 * 96.11595 * 3 2 1 13 13 H 1.08998 * 109.47045 * 180.02562 * 12 3 2 14 14 C 1.53000 * 109.47159 * 300.00123 * 12 3 2 15 15 C 1.50697 * 109.47420 * 60.00124 * 12 3 2 16 16 O 1.21294 * 119.99720 * 0.02562 * 15 12 3 17 17 N 1.34771 * 120.00386 * 179.97438 * 15 12 3 18 18 C 1.39980 * 119.99859 * 184.19281 * 17 15 12 19 19 C 1.38851 * 120.07725 * 332.56026 * 18 17 15 20 20 C 1.38116 * 119.94104 * 179.79105 * 19 18 17 21 21 N 1.48019 * 119.95526 * 180.22931 * 20 19 18 22 22 O 1.21802 * 120.00131 * 180.23061 * 21 20 19 23 23 O 1.21797 * 119.99596 * 0.23325 * 21 20 19 24 24 C 1.38297 * 120.09058 * 0.46209 * 20 19 18 25 25 C 1.38257 * 120.15260 * 359.79167 * 24 20 19 26 26 C 1.38227 * 120.05729 * 359.97438 * 25 24 20 27 27 Cl 1.73594 * 120.04789 * 179.97438 * 26 25 24 28 28 H 1.09004 * 109.47494 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47495 * 299.99472 * 1 2 3 30 30 H 1.09004 * 109.47412 * 59.99287 * 1 2 3 31 31 H 1.09005 * 109.47048 * 240.01144 * 2 1 3 32 32 H 1.08998 * 109.47501 * 120.00257 * 2 1 3 33 33 H 0.96999 * 119.99527 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47320 * 179.97438 * 14 12 3 35 35 H 1.08996 * 109.47119 * 300.00131 * 14 12 3 36 36 H 1.08998 * 109.47146 * 60.00057 * 14 12 3 37 37 H 0.96998 * 120.00436 * 4.19888 * 17 15 12 38 38 H 1.07995 * 120.02872 * 359.97438 * 19 18 17 39 39 H 1.08008 * 119.92254 * 179.76714 * 24 20 19 40 40 H 1.08001 * 119.97107 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1274 2.0690 -1.1790 5 1 1.4835 1.8216 -2.0101 6 6 3.0655 3.0841 -1.3062 7 7 4.1048 3.1246 -0.4994 8 14 2.8533 4.3927 -2.6223 9 1 2.1736 5.5767 -2.0380 10 1 4.1856 4.7930 -3.1418 11 1 2.0318 3.8486 -3.7334 12 6 2.3899 2.0267 1.2616 13 1 2.7267 3.0443 1.0636 14 6 1.1762 2.0637 2.1924 15 6 3.5013 1.2476 1.9162 16 8 3.9403 0.2514 1.3814 17 7 4.0084 1.6583 3.0955 18 6 5.0986 0.9863 3.6606 19 6 5.3096 -0.3570 3.3798 20 6 6.3887 -1.0161 3.9355 21 7 6.6169 -2.4469 3.6324 22 8 7.5658 -3.0301 4.1253 23 8 5.8557 -3.0409 2.8900 24 6 7.2536 -0.3424 4.7786 25 6 7.0441 0.9938 5.0649 26 6 5.9689 1.6608 4.5084 27 17 5.7057 3.3385 4.8686 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8932 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 4.7606 3.8337 -0.5886 34 1 1.4527 2.5436 3.1312 35 1 0.3722 2.6273 1.7190 36 1 0.8390 1.0463 2.3904 37 1 3.6178 2.4194 3.5527 38 1 4.6323 -0.8852 2.7252 39 1 8.0944 -0.8615 5.2146 40 1 7.7211 1.5170 5.7240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299339040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:45 Heat of formation + Delta-G solvation = 13.201662 kcal Electronic energy + Delta-G solvation = -28157.903551 eV Core-core repulsion = 24003.297730 eV Total energy + Delta-G solvation = -4154.605822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.11954 -40.52155 -38.72624 -36.86669 -36.48055 -36.07692 -34.59302 -32.04994 -31.77366 -31.45988 -29.59979 -28.33219 -26.51794 -24.61609 -23.97500 -22.91627 -22.22871 -21.01099 -19.65776 -19.40331 -18.52790 -17.45094 -17.32885 -17.12164 -16.55806 -16.27386 -15.55742 -14.92616 -14.61136 -14.17163 -14.05228 -13.91850 -13.48312 -13.40644 -13.10351 -12.58409 -12.47830 -12.15158 -12.02496 -11.92209 -11.58429 -11.52327 -11.37155 -11.28528 -11.14697 -11.12234 -11.03888 -10.86976 -10.75465 -10.38349 -10.23378 -10.06024 -9.77880 -9.51554 -9.11175 -8.52943 -8.31637 -6.91264 -5.99169 -3.39851 -0.24441 0.80383 1.25941 1.37366 1.70771 2.95104 3.10324 3.28571 3.37586 3.38982 3.49389 4.22784 4.36880 4.51648 4.64406 4.67997 5.10467 5.14808 5.24869 5.35759 5.47375 5.63368 5.72130 5.90431 5.93982 5.99364 6.00903 6.14755 6.33228 6.38263 6.40201 6.58644 6.67210 6.69958 6.87981 6.99491 7.17082 7.59336 7.68231 7.72467 8.24572 8.67064 9.01447 9.64165 10.15393 11.09089 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.004159 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.288244 B = 6730.478334 C = 7813.218759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 N -0.560 5.560 4 C -0.252 4.252 5 H 0.075 0.925 6 C 0.002 3.998 7 N -0.899 5.899 8 Si 0.904 3.096 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.277 1.277 12 C 0.174 3.826 13 H 0.133 0.867 14 C -0.165 4.165 15 C 0.519 3.481 16 O -0.501 6.501 17 N -0.675 5.675 18 C 0.190 3.810 19 C -0.067 4.067 20 C -0.019 4.019 21 N 0.030 4.970 22 O -0.166 6.166 23 O -0.146 6.146 24 C -0.083 4.083 25 C -0.087 4.087 26 C -0.039 4.039 27 Cl -0.040 7.040 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.255 0.745 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.412 0.588 38 H 0.189 0.811 39 H 0.158 0.842 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 -0.286 14.620 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.278 5.278 4 C -0.382 4.382 5 H 0.093 0.907 6 C -0.197 4.197 7 N -0.543 5.543 8 Si 0.734 3.266 9 H -0.214 1.214 10 H -0.218 1.218 11 H -0.202 1.202 12 C 0.061 3.939 13 H 0.150 0.850 14 C -0.224 4.224 15 C 0.308 3.692 16 O -0.373 6.373 17 N -0.321 5.321 18 C 0.089 3.911 19 C -0.089 4.089 20 C -0.103 4.103 21 N 0.550 4.450 22 O -0.380 6.380 23 O -0.365 6.365 24 C -0.103 4.103 25 C -0.106 4.106 26 C -0.070 4.070 27 Cl -0.011 7.011 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.250 0.750 38 H 0.206 0.794 39 H 0.175 0.825 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.813 -0.029 14.232 14.347 hybrid contribution 0.148 0.995 -0.518 1.131 sum 1.961 0.966 13.714 13.887 Atomic orbital electron populations 1.22418 0.99732 0.99241 1.01425 1.20824 0.91289 0.86430 0.99949 1.43746 1.73270 1.09125 1.01641 1.19252 1.13813 1.12944 0.92148 0.90686 1.25020 0.94481 1.01467 0.98733 1.70034 1.10104 1.33162 1.41042 0.86237 0.77081 0.81938 0.81382 1.21366 1.21832 1.20228 1.20345 0.88608 0.99249 0.85692 0.84963 1.22459 1.00143 1.01504 0.98326 1.23144 0.84235 0.84914 0.76926 1.90527 1.59577 1.25832 1.61361 1.44393 1.30483 1.34063 1.23113 1.17404 0.89952 0.90031 0.93720 1.21478 0.97022 0.92563 0.97848 1.20989 1.01620 0.81903 1.05767 1.43519 0.99612 1.03050 0.98801 1.94497 1.21704 1.68393 1.53420 1.94602 1.42784 1.67343 1.31810 1.20811 0.99160 0.94027 0.96331 1.20783 0.96461 0.93044 1.00356 1.21106 0.96848 0.87017 1.02010 1.98401 1.95910 1.13430 1.93327 0.94343 0.93452 0.93098 0.93623 0.93709 0.93466 0.93723 0.91297 0.93031 0.75035 0.79422 0.82458 0.82595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.01 37.15 0.37 -2.57 16 2 C 0.14 2.95 5.06 -4.05 -0.02 2.93 16 3 N -0.56 -12.94 2.18 -166.99 -0.36 -13.31 16 4 C -0.25 -6.47 9.56 -15.06 -0.14 -6.62 16 5 H 0.08 1.92 7.91 -52.48 -0.42 1.51 16 6 C 0.00 0.04 4.80 -17.43 -0.08 -0.04 16 7 N -0.90 -24.15 11.06 55.49 0.61 -23.54 16 8 Si 0.90 20.61 29.60 -169.99 -5.03 15.58 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.17 3.57 2.23 -69.08 -0.15 3.42 16 13 H 0.13 3.04 5.70 -51.93 -0.30 2.74 16 14 C -0.16 -2.63 8.15 37.16 0.30 -2.33 16 15 C 0.52 10.44 6.49 -10.99 -0.07 10.36 16 16 O -0.50 -11.70 11.63 5.55 0.06 -11.63 16 17 N -0.67 -10.79 5.08 -9.83 -0.05 -10.84 16 18 C 0.19 2.88 6.43 -83.64 -0.54 2.34 16 19 C -0.07 -1.11 8.28 -39.40 -0.33 -1.43 16 20 C -0.02 -0.29 6.85 -79.97 -0.55 -0.83 16 21 N 0.03 0.49 4.45 33.95 0.15 0.64 16 22 O -0.17 -2.62 18.44 -29.46 -0.54 -3.16 16 23 O -0.15 -2.67 18.44 -29.46 -0.54 -3.21 16 24 C -0.08 -0.94 9.55 -39.55 -0.38 -1.31 16 25 C -0.09 -0.87 9.82 -39.58 -0.39 -1.26 16 26 C -0.04 -0.48 6.34 -39.32 -0.25 -0.73 16 27 Cl -0.04 -0.44 27.82 -51.86 -1.44 -1.88 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.77 6.13 -51.92 -0.32 0.46 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 32 H 0.04 0.93 6.47 -51.93 -0.34 0.60 16 33 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.04 0.57 7.48 -51.93 -0.39 0.18 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.80 6.63 -51.93 -0.34 0.45 16 37 H 0.41 5.52 7.13 -40.82 -0.29 5.23 16 38 H 0.19 3.56 5.21 -52.49 -0.27 3.29 16 39 H 0.16 1.41 7.60 -52.48 -0.40 1.01 16 40 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -29.71 352.76 -8.36 -38.07 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -4.31 Total: 6.05 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -2.23 Total: 1.92 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.35 Total: -47.04 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -1.02 Total: -18.01 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.44 Total: -1.88 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.71 -8.36 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299339040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.272 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds