Wall clock time and date at job start Sat Apr 11 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99908 * 2 1 4 4 C 1.50696 * 109.47458 * 275.00203 * 3 2 1 5 5 H 1.08003 * 119.99678 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00036 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00380 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99816 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47015 * 89.99767 * 8 6 4 10 10 H 1.48500 * 109.47358 * 209.99548 * 8 6 4 11 11 H 1.48495 * 109.46972 * 329.99917 * 8 6 4 12 12 S 1.65598 * 119.99911 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.39869 * 156.46150 * 12 2 1 14 14 O 1.42092 * 106.40541 * 23.54103 * 12 2 1 15 15 N 1.65604 * 107.21785 * 269.99796 * 12 2 1 16 16 C 1.46957 * 120.65390 * 269.81648 * 15 12 2 17 17 C 1.53197 * 108.89063 * 233.53664 * 16 15 12 18 18 C 1.53040 * 109.31110 * 305.44560 * 17 16 15 19 19 C 1.53044 * 109.53662 * 61.36306 * 18 17 16 20 20 H 1.09001 * 109.52587 * 58.60428 * 19 18 17 21 21 S 1.81405 * 109.49556 * 178.68279 * 19 18 17 22 22 N 1.65602 * 104.45014 * 304.83672 * 21 19 18 23 23 O 1.42100 * 110.54185 * 56.46412 * 21 19 18 24 24 O 1.42101 * 110.54166 * 193.21421 * 21 19 18 25 25 C 1.46926 * 120.62802 * 90.00305 * 15 12 2 26 26 H 1.09010 * 109.47074 * 269.99883 * 1 2 3 27 27 H 1.09002 * 109.47158 * 29.99442 * 1 2 3 28 28 H 1.08996 * 109.47371 * 149.99952 * 1 2 3 29 29 H 1.09002 * 109.47290 * 35.00587 * 3 2 1 30 30 H 1.09006 * 109.47077 * 154.99633 * 3 2 1 31 31 H 0.97003 * 120.00550 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46843 * 113.75659 * 16 15 12 33 33 H 1.08997 * 109.71602 * 353.47153 * 16 15 12 34 34 H 1.08995 * 109.50005 * 185.49506 * 17 16 15 35 35 H 1.08994 * 109.52103 * 65.41136 * 17 16 15 36 36 H 1.08994 * 109.45892 * 301.34445 * 18 17 16 37 37 H 1.09001 * 109.45142 * 181.37673 * 18 17 16 38 38 H 0.96996 * 120.00094 * 149.99596 * 22 21 19 39 39 H 0.97000 * 119.99698 * 330.00277 * 22 21 19 40 40 H 1.09002 * 109.58861 * 6.60060 * 25 15 12 41 41 H 1.08996 * 109.58519 * 246.31951 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7658 -1.4153 5 1 1.9288 1.1935 -2.2332 6 6 3.0006 2.9504 -1.6663 7 7 3.5033 3.6470 -0.6705 8 14 3.1795 3.5661 -3.4208 9 1 2.0192 4.4270 -3.7641 10 1 4.4331 4.3527 -3.5440 11 1 3.2285 2.4082 -4.3492 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5449 14 8 1.4114 -2.4062 -0.5455 15 7 2.5381 -1.8593 1.5810 16 6 3.7458 -1.4230 2.2956 17 6 4.4355 -2.6504 2.8994 18 6 3.4348 -3.4179 3.7665 19 6 2.2683 -3.8970 2.8994 20 1 2.6466 -4.5322 2.0984 21 16 1.1023 -4.8398 3.9204 22 7 2.0262 -6.0264 4.6139 23 8 0.6552 -4.0568 5.0187 24 8 0.1810 -5.5467 3.1014 25 6 1.5540 -2.6837 2.2956 26 1 -0.3634 0.0000 1.0278 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6501 2.0043 0.5895 30 1 3.1858 1.1177 0.4344 31 1 3.9668 4.4806 -0.8470 32 1 3.4673 -0.7321 3.0914 33 1 4.4245 -0.9268 1.6019 34 1 5.2774 -2.3297 3.5129 35 1 4.7943 -3.2972 2.0989 36 1 3.0582 -2.7632 4.5523 37 1 3.9298 -4.2783 4.2169 38 1 1.7899 -6.3771 5.4868 39 1 2.8037 -6.3707 4.1471 40 1 0.7856 -3.0209 1.5999 41 1 1.0946 -2.0970 3.0911 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342376154.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:56 Heat of formation + Delta-G solvation = -145.079098 kcal Electronic energy + Delta-G solvation = -27395.661168 eV Core-core repulsion = 23371.679435 eV Total energy + Delta-G solvation = -4023.981733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.69733 -37.27803 -36.81230 -36.19853 -35.54292 -35.26738 -33.71357 -32.60961 -32.46694 -31.56204 -27.81490 -25.19649 -24.76866 -24.06876 -22.31372 -21.05097 -19.68893 -18.78037 -17.95389 -17.65806 -17.36037 -16.76310 -16.43007 -16.33565 -15.87796 -15.43718 -15.00099 -14.90148 -14.39521 -14.13192 -13.97750 -13.49584 -13.42487 -13.20811 -12.45655 -12.42192 -12.35501 -12.34505 -12.22238 -12.19416 -11.87452 -11.83081 -11.70638 -11.40149 -11.24033 -11.17783 -11.12610 -10.93631 -10.77369 -10.73596 -10.57346 -10.43371 -10.07128 -9.79949 -9.10287 -8.48253 -8.11414 -6.10403 -4.14615 -0.08680 1.04551 2.53455 3.27288 3.29407 3.35616 3.37623 3.41868 3.83556 3.95690 4.03781 4.41367 4.42541 4.61696 4.70193 4.85580 4.96209 5.00706 5.21871 5.24579 5.32129 5.41764 5.51994 5.60586 5.61072 5.65496 5.72536 5.96149 6.04418 6.08208 6.25977 6.43731 6.59901 6.68459 7.16612 7.33912 7.54231 7.86974 8.15701 8.87800 9.50941 10.98101 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.003299 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.227790 B = 8485.761543 C = 8824.044148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.995 5.995 3 C 0.257 3.743 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.776 3.224 13 O -0.956 6.956 14 O -0.993 6.993 15 N -1.003 6.003 16 C 0.114 3.886 17 C -0.124 4.124 18 C -0.100 4.100 19 C -0.600 4.600 20 H 0.144 0.856 21 S 2.618 3.382 22 N -1.249 6.249 23 O -0.957 6.957 24 O -0.956 6.956 25 C 0.137 3.863 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.420 0.580 39 H 0.413 0.587 40 H 0.105 0.895 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.004 -16.188 13.303 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.785 3.215 13 O -0.940 6.940 14 O -0.977 6.977 15 N -0.840 5.840 16 C -0.012 4.012 17 C -0.164 4.164 18 C -0.139 4.139 19 C -0.712 4.712 20 H 0.162 0.838 21 S 2.708 3.292 22 N -0.922 5.922 23 O -0.947 6.947 24 O -0.945 6.945 25 C 0.009 3.991 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.250 0.750 39 H 0.240 0.760 40 H 0.123 0.877 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.694 -16.206 12.616 20.549 hybrid contribution 0.948 0.441 -0.717 1.268 sum 0.254 -15.765 11.899 19.753 Atomic orbital electron populations 1.21395 0.79991 1.03657 1.00398 1.57661 1.14449 1.23295 1.88353 1.19070 0.90923 0.78743 0.97759 1.21487 1.36195 1.06399 0.92888 0.92174 1.24924 0.95038 0.96456 0.97533 1.69911 1.37291 1.15287 1.30956 0.86508 0.77565 0.78855 0.84616 1.20569 1.21024 1.19695 1.02193 0.73640 0.72953 0.72692 1.93624 1.40410 1.84897 1.75072 1.93524 1.67366 1.60436 1.76334 1.58471 1.28787 1.64290 1.32491 1.21505 0.85715 0.96114 0.97840 1.21805 0.97541 0.97584 0.99507 1.21327 0.94076 1.01414 0.97048 1.30787 1.14534 1.11644 1.14198 0.83776 1.04805 0.74581 0.74631 0.75152 1.53181 1.46504 1.58704 1.33763 1.93605 1.79256 1.70922 1.50873 1.93646 1.58935 1.70914 1.71024 1.20992 0.90743 0.89076 0.98339 0.94128 0.90177 0.91501 0.94626 0.94519 0.92647 0.90981 0.87928 0.89842 0.91006 0.89511 0.90341 0.75031 0.76034 0.87704 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.57 10.68 59.85 0.64 2.21 16 2 N -0.99 -20.37 3.23 -123.05 -0.40 -20.77 16 3 C 0.26 6.30 5.08 -5.20 -0.03 6.27 16 4 C -0.53 -14.72 9.38 -34.44 -0.32 -15.04 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -25.65 13.29 55.43 0.74 -24.92 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 12 S 2.78 53.90 6.10 -107.50 -0.66 53.25 16 13 O -0.96 -21.94 15.70 -57.18 -0.90 -22.84 16 14 O -0.99 -20.13 15.33 -57.18 -0.88 -21.01 16 15 N -1.00 -14.55 3.36 -113.50 -0.38 -14.93 16 16 C 0.11 1.43 6.47 -3.69 -0.02 1.41 16 17 C -0.12 -1.12 6.08 -26.61 -0.16 -1.28 16 18 C -0.10 -0.73 5.06 -26.69 -0.14 -0.86 16 19 C -0.60 -5.30 3.02 -26.61 -0.08 -5.38 16 20 H 0.14 1.06 8.14 -51.92 -0.42 0.64 16 21 S 2.62 23.57 5.42 -107.50 -0.58 22.99 16 22 N -1.25 -6.11 8.79 60.35 0.53 -5.58 16 23 O -0.96 -11.29 18.09 -57.54 -1.04 -12.33 16 24 O -0.96 -12.50 18.10 -57.54 -1.04 -13.54 16 25 C 0.14 1.64 5.76 -3.71 -0.02 1.62 16 26 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 28 H 0.07 1.08 7.02 -51.93 -0.36 0.71 16 29 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 30 H 0.04 0.94 7.61 -51.93 -0.40 0.54 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.49 6.92 -51.93 -0.36 1.13 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.33 7.64 -51.93 -0.40 -0.07 16 38 H 0.42 1.56 8.96 -34.47 -0.31 1.25 16 39 H 0.41 0.96 8.90 -34.47 -0.31 0.65 16 40 H 0.10 1.28 6.92 -51.93 -0.36 0.92 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -38.60 358.52 -10.29 -48.89 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.84 Total: -1.82 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -0.23 Total: -9.40 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: 0.49 Total: -66.20 kcal Atomic # 8 Polarization: -65.86 SS G_CDS: -3.86 Total: -69.72 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 77.48 SS G_CDS: -1.24 Total: 76.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -38.60 -10.29 -48.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342376154.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.189 kcal (2) G-P(sol) polarization free energy of solvation -38.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds