Wall clock time and date at job start Sat Apr 11 2020 06:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99908 * 2 1 4 4 C 1.50696 * 109.47458 * 275.00203 * 3 2 1 5 5 H 1.08003 * 119.99678 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00036 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00380 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99816 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47015 * 89.99767 * 8 6 4 10 10 H 1.48500 * 109.47358 * 209.99548 * 8 6 4 11 11 H 1.48495 * 109.46972 * 329.99917 * 8 6 4 12 12 S 1.65598 * 119.99911 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.39869 * 156.46150 * 12 2 1 14 14 O 1.42092 * 106.40541 * 23.54103 * 12 2 1 15 15 N 1.65604 * 107.21785 * 269.99796 * 12 2 1 16 16 C 1.46957 * 120.65390 * 269.81648 * 15 12 2 17 17 C 1.53197 * 108.89063 * 233.53664 * 16 15 12 18 18 C 1.53040 * 109.31110 * 305.44560 * 17 16 15 19 19 C 1.53044 * 109.53662 * 61.36306 * 18 17 16 20 20 H 1.09001 * 109.52587 * 58.60428 * 19 18 17 21 21 S 1.81405 * 109.49556 * 178.68279 * 19 18 17 22 22 N 1.65602 * 104.45014 * 304.83672 * 21 19 18 23 23 O 1.42100 * 110.54185 * 56.46412 * 21 19 18 24 24 O 1.42101 * 110.54166 * 193.21421 * 21 19 18 25 25 C 1.46926 * 120.62802 * 90.00305 * 15 12 2 26 26 H 1.09010 * 109.47074 * 269.99883 * 1 2 3 27 27 H 1.09002 * 109.47158 * 29.99442 * 1 2 3 28 28 H 1.08996 * 109.47371 * 149.99952 * 1 2 3 29 29 H 1.09002 * 109.47290 * 35.00587 * 3 2 1 30 30 H 1.09006 * 109.47077 * 154.99633 * 3 2 1 31 31 H 0.97003 * 120.00550 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46843 * 113.75659 * 16 15 12 33 33 H 1.08997 * 109.71602 * 353.47153 * 16 15 12 34 34 H 1.08995 * 109.50005 * 185.49506 * 17 16 15 35 35 H 1.08994 * 109.52103 * 65.41136 * 17 16 15 36 36 H 1.08994 * 109.45892 * 301.34445 * 18 17 16 37 37 H 1.09001 * 109.45142 * 181.37673 * 18 17 16 38 38 H 0.96996 * 120.00094 * 149.99596 * 22 21 19 39 39 H 0.97000 * 119.99698 * 330.00277 * 22 21 19 40 40 H 1.09002 * 109.58861 * 6.60060 * 25 15 12 41 41 H 1.08996 * 109.58519 * 246.31951 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7658 -1.4153 5 1 1.9288 1.1935 -2.2332 6 6 3.0006 2.9504 -1.6663 7 7 3.5033 3.6470 -0.6705 8 14 3.1795 3.5661 -3.4208 9 1 2.0192 4.4270 -3.7641 10 1 4.4331 4.3527 -3.5440 11 1 3.2285 2.4082 -4.3492 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5449 14 8 1.4114 -2.4062 -0.5455 15 7 2.5381 -1.8593 1.5810 16 6 3.7458 -1.4230 2.2956 17 6 4.4355 -2.6504 2.8994 18 6 3.4348 -3.4179 3.7665 19 6 2.2683 -3.8970 2.8994 20 1 2.6466 -4.5322 2.0984 21 16 1.1023 -4.8398 3.9204 22 7 2.0262 -6.0264 4.6139 23 8 0.6552 -4.0568 5.0187 24 8 0.1810 -5.5467 3.1014 25 6 1.5540 -2.6837 2.2956 26 1 -0.3634 0.0000 1.0278 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6501 2.0043 0.5895 30 1 3.1858 1.1177 0.4344 31 1 3.9668 4.4806 -0.8470 32 1 3.4673 -0.7321 3.0914 33 1 4.4245 -0.9268 1.6019 34 1 5.2774 -2.3297 3.5129 35 1 4.7943 -3.2972 2.0989 36 1 3.0582 -2.7632 4.5523 37 1 3.9298 -4.2783 4.2169 38 1 1.7899 -6.3771 5.4868 39 1 2.8037 -6.3707 4.1471 40 1 0.7856 -3.0209 1.5999 41 1 1.0946 -2.0970 3.0911 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342376154.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:55 Heat of formation + Delta-G solvation = -179.331040 kcal Electronic energy + Delta-G solvation = -27397.146443 eV Core-core repulsion = 23371.679435 eV Total energy + Delta-G solvation = -4025.467008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.58583 -38.43874 -38.12004 -37.25467 -37.03880 -36.92360 -34.53057 -34.29515 -33.43235 -32.41346 -29.69309 -26.84574 -25.75182 -24.93183 -24.20210 -21.91718 -20.38346 -19.97821 -19.19829 -18.59677 -18.44260 -18.25679 -18.10784 -17.33714 -17.10629 -16.59032 -16.17371 -15.89686 -15.73487 -15.24844 -15.09803 -14.86210 -14.80253 -14.26222 -14.06876 -13.95538 -13.47042 -13.37064 -13.23149 -13.20341 -13.14198 -13.09254 -13.07457 -12.96888 -12.95353 -12.50719 -12.42776 -12.32918 -12.06495 -12.00480 -11.79386 -11.70807 -11.39547 -11.15226 -10.61658 -10.19028 -9.81127 -8.22482 -6.34455 -0.84087 -0.42698 1.37948 1.39794 1.50473 1.89281 1.95477 2.36824 2.47113 2.65999 3.08335 3.15268 3.23772 3.32902 3.68110 3.78454 3.99970 4.08146 4.12507 4.18597 4.37782 4.57588 4.61048 4.67138 4.73777 4.83380 4.90703 4.99044 5.02084 5.10838 5.16324 5.29392 5.34013 5.39687 5.50797 5.67812 5.90162 6.08187 6.41948 6.73212 7.34518 8.84942 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.003299 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.227790 B = 8485.761543 C = 8824.044148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.005 6.005 3 C 0.273 3.727 4 C -0.553 4.553 5 H 0.049 0.951 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.955 3.045 9 H -0.266 1.266 10 H -0.276 1.276 11 H -0.276 1.276 12 S 2.788 3.212 13 O -0.999 6.999 14 O -1.005 7.005 15 N -0.994 5.994 16 C 0.101 3.899 17 C -0.121 4.121 18 C -0.102 4.102 19 C -0.596 4.596 20 H 0.160 0.840 21 S 2.642 3.358 22 N -1.230 6.230 23 O -0.985 6.985 24 O -1.000 7.000 25 C 0.117 3.883 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.020 0.980 31 H 0.268 0.732 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.429 0.571 39 H 0.428 0.572 40 H 0.098 0.902 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 -17.404 14.630 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.847 5.847 3 C 0.149 3.851 4 C -0.592 4.592 5 H 0.067 0.933 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.780 3.220 9 H -0.191 1.191 10 H -0.201 1.201 11 H -0.200 1.200 12 S 2.798 3.202 13 O -0.983 6.983 14 O -0.989 6.989 15 N -0.835 5.835 16 C -0.023 4.023 17 C -0.161 4.161 18 C -0.140 4.140 19 C -0.707 4.707 20 H 0.177 0.823 21 S 2.733 3.267 22 N -0.909 5.909 23 O -0.974 6.974 24 O -0.989 6.989 25 C -0.010 4.010 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.261 0.739 39 H 0.258 0.742 40 H 0.116 0.884 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.255 -17.438 13.945 22.330 hybrid contribution 0.815 0.754 -1.050 1.528 sum 0.559 -16.685 12.895 21.094 Atomic orbital electron populations 1.21610 0.78183 1.03689 1.02599 1.57600 1.15760 1.22170 1.89139 1.18624 0.90460 0.80133 0.95880 1.21820 1.36445 1.06789 0.94144 0.93259 1.25707 0.94710 0.96670 1.01411 1.69991 1.37709 1.15680 1.32696 0.85604 0.78211 0.78301 0.79902 1.19120 1.20142 1.20049 1.01550 0.72511 0.72487 0.73676 1.93563 1.42340 1.85403 1.76986 1.93497 1.67498 1.60410 1.77518 1.58015 1.30013 1.64373 1.31066 1.21770 0.84776 0.98417 0.97370 1.21828 0.98366 0.95916 0.99974 1.21483 0.93076 1.02968 0.96488 1.30755 1.14766 1.10364 1.14852 0.82253 1.03808 0.74252 0.74446 0.74168 1.52726 1.46560 1.57541 1.34102 1.93567 1.80239 1.71888 1.51755 1.93603 1.61214 1.71963 1.72138 1.21339 0.90530 0.90423 0.98707 0.90849 0.90919 0.90691 0.95415 0.96175 0.92274 0.89619 0.90661 0.87285 0.91174 0.88926 0.86257 0.73868 0.74165 0.88351 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.88 10.68 127.77 1.36 4.24 16 2 N -1.01 -41.92 3.23 -543.21 -1.75 -43.67 16 3 C 0.27 13.76 5.08 85.63 0.43 14.19 16 4 C -0.55 -31.41 9.38 25.60 0.24 -31.17 16 5 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 6 C 0.01 0.84 5.46 84.65 0.46 1.30 16 7 N -0.92 -53.38 13.29 21.44 0.28 -53.10 16 8 Si 0.96 44.52 29.54 68.60 2.03 46.54 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 S 2.79 110.14 6.10 -56.49 -0.34 109.79 16 13 O -1.00 -47.52 15.70 -128.00 -2.01 -49.52 16 14 O -1.01 -41.05 15.33 -128.00 -1.96 -43.01 16 15 N -0.99 -28.32 3.36 -512.99 -1.72 -30.04 16 16 C 0.10 2.48 6.47 86.36 0.56 3.04 16 17 C -0.12 -1.86 6.08 30.67 0.19 -1.67 16 18 C -0.10 -1.11 5.06 30.62 0.16 -0.96 16 19 C -0.60 -9.02 3.02 30.67 0.09 -8.93 16 20 H 0.16 1.93 8.14 -2.39 -0.02 1.91 16 21 S 2.64 41.97 5.42 -56.49 -0.31 41.66 16 22 N -1.23 -8.06 8.79 37.02 0.33 -7.73 16 23 O -0.99 -21.29 18.09 -127.65 -2.31 -23.60 16 24 O -1.00 -25.04 18.10 -127.65 -2.31 -27.35 16 25 C 0.12 2.64 5.76 86.36 0.50 3.14 16 26 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 28 H 0.07 2.40 7.02 -2.39 -0.02 2.39 16 29 H 0.03 1.42 8.11 -2.39 -0.02 1.40 16 30 H 0.02 1.08 7.61 -2.38 -0.02 1.06 16 31 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 2.26 6.92 -2.39 -0.02 2.25 16 34 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.12 0.37 7.64 -2.39 -0.02 0.35 16 38 H 0.43 1.81 8.96 -96.75 -0.87 0.94 16 39 H 0.43 0.31 8.90 -96.75 -0.86 -0.55 16 40 H 0.10 2.34 6.92 -2.39 -0.02 2.32 16 41 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -84.93 358.52 -6.75 -91.68 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -0.66 Total: 5.17 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 3.99 Total: -16.81 kcal Atomic # 7 Polarization: -131.68 SS G_CDS: -2.86 Total: -134.54 kcal Atomic # 8 Polarization: -134.90 SS G_CDS: -8.59 Total: -143.49 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 152.10 SS G_CDS: -0.65 Total: 151.45 kcal Total: -84.93 -6.75 -91.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342376154.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.649 kcal (2) G-P(sol) polarization free energy of solvation -84.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds