Wall clock time and date at job start Sat Apr 11 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46498 * 120.00128 * 2 1 4 4 C 1.50700 * 109.47257 * 275.00345 * 3 2 1 5 5 H 1.07994 * 119.99905 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99780 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00529 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99592 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47316 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47153 * 119.99967 * 8 6 4 11 11 H 1.48501 * 109.46868 * 240.00017 * 8 6 4 12 12 S 1.65600 * 120.00151 * 180.02562 * 2 1 3 13 13 O 1.42105 * 106.40193 * 156.45867 * 12 2 1 14 14 O 1.42097 * 106.40493 * 23.54264 * 12 2 1 15 15 N 1.65602 * 107.21829 * 269.99848 * 12 2 1 16 16 C 1.46919 * 120.62914 * 90.00410 * 15 12 2 17 17 C 1.53186 * 108.77954 * 126.41267 * 16 15 12 18 18 C 1.53046 * 109.31207 * 54.63337 * 17 16 15 19 19 C 1.53046 * 109.53579 * 298.63381 * 18 17 16 20 20 H 1.08998 * 109.49687 * 301.41384 * 19 18 17 21 21 S 1.81395 * 109.49540 * 181.31823 * 19 18 17 22 22 N 1.65597 * 104.45268 * 60.00303 * 21 19 18 23 23 O 1.42105 * 110.54040 * 171.62707 * 21 19 18 24 24 O 1.42106 * 110.54416 * 308.37389 * 21 19 18 25 25 C 1.46927 * 120.62907 * 270.02062 * 15 12 2 26 26 H 1.08995 * 109.47037 * 269.99302 * 1 2 3 27 27 H 1.08997 * 109.47383 * 30.00255 * 1 2 3 28 28 H 1.09005 * 109.47069 * 149.99979 * 1 2 3 29 29 H 1.09006 * 109.46720 * 35.00218 * 3 2 1 30 30 H 1.08998 * 109.47644 * 154.99859 * 3 2 1 31 31 H 0.97001 * 120.00466 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.59216 * 6.62192 * 16 15 12 33 33 H 1.09006 * 109.58250 * 246.20087 * 16 15 12 34 34 H 1.09004 * 109.49658 * 294.68126 * 17 16 15 35 35 H 1.08995 * 109.50405 * 174.58208 * 17 16 15 36 36 H 1.08993 * 109.45866 * 58.65556 * 18 17 16 37 37 H 1.09000 * 109.45949 * 178.61892 * 18 17 16 38 38 H 0.97005 * 119.99877 * 359.97438 * 22 21 19 39 39 H 0.96998 * 120.00179 * 179.97438 * 22 21 19 40 40 H 1.09000 * 109.58699 * 353.37481 * 25 15 12 41 41 H 1.08997 * 109.58189 * 113.65683 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1936 -2.2331 6 6 2.9997 2.9509 -1.6662 7 7 3.5016 3.6479 -0.6704 8 14 3.1774 3.5673 -3.4207 9 1 2.5300 2.6075 -4.3506 10 1 2.5257 4.8957 -3.5470 11 1 4.6182 3.6885 -3.7591 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5450 14 8 1.4114 -2.4063 -0.5456 15 7 2.5381 -1.8593 1.5810 16 6 1.5542 -2.6837 2.2956 17 6 2.2709 -3.8966 2.8971 18 6 3.4370 -3.4166 3.7643 19 6 4.4359 -2.6461 2.8978 20 1 4.7950 -3.2909 2.0958 21 16 5.8366 -2.1112 3.9188 22 7 6.4833 -3.5192 4.5034 23 8 6.8657 -1.5639 3.1060 24 8 5.3772 -1.4289 5.0776 25 6 3.7436 -1.4190 2.2963 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6500 2.0042 0.5895 30 1 3.1857 1.1177 0.4343 31 1 3.9644 4.4819 -0.8469 32 1 0.7859 -3.0213 1.5999 33 1 1.0962 -2.0976 3.0924 34 1 2.6504 -4.5296 2.0950 35 1 1.5718 -4.4653 3.5102 36 1 3.0597 -2.7638 4.5513 37 1 3.9338 -4.2768 4.2133 38 1 6.0871 -4.3714 4.2630 39 1 7.2582 -3.4917 5.0862 40 1 4.4201 -0.9220 1.6009 41 1 3.4645 -0.7278 3.0915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342376175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:58 Heat of formation + Delta-G solvation = -143.475668 kcal Electronic energy + Delta-G solvation = -27538.824289 eV Core-core repulsion = 23514.912086 eV Total energy + Delta-G solvation = -4023.912203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.71806 -37.12259 -36.81595 -36.04317 -35.54188 -35.26973 -33.63847 -32.60718 -32.44326 -31.57609 -27.80669 -25.19863 -24.77490 -24.08439 -22.29583 -21.07374 -19.56344 -18.79541 -17.96534 -17.56657 -17.32456 -16.76883 -16.37842 -16.03339 -15.82508 -15.61354 -14.95597 -14.88873 -14.38913 -14.14179 -13.97800 -13.54399 -13.30880 -13.26592 -12.43800 -12.35988 -12.27987 -12.20344 -12.18598 -12.06355 -11.91160 -11.78786 -11.70351 -11.40309 -11.23352 -11.18526 -11.11605 -10.92307 -10.72811 -10.67898 -10.55217 -10.46139 -10.05176 -9.76629 -9.12183 -8.45645 -8.10829 -6.07216 -4.11750 0.01006 1.04127 2.64680 3.28414 3.31440 3.39306 3.44022 3.45875 3.87210 3.96221 4.09488 4.44180 4.47625 4.63829 4.66650 4.84913 4.96530 5.04101 5.17717 5.27602 5.41617 5.44268 5.49701 5.53145 5.56717 5.61595 5.72832 5.92129 5.94895 6.01827 6.24882 6.42611 6.58072 6.75947 7.17894 7.34835 7.54999 7.89811 8.17819 8.90743 9.53927 11.01462 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013831 B = 0.004245 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.999576 B = 6594.057230 C = 7904.675676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.995 5.995 3 C 0.255 3.745 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.281 1.281 12 S 2.776 3.224 13 O -0.957 6.957 14 O -0.992 6.992 15 N -1.003 6.003 16 C 0.114 3.886 17 C -0.124 4.124 18 C -0.102 4.102 19 C -0.599 4.599 20 H 0.146 0.854 21 S 2.616 3.384 22 N -1.251 6.251 23 O -0.953 6.953 24 O -0.957 6.957 25 C 0.136 3.864 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.411 0.589 39 H 0.419 0.581 40 H 0.113 0.887 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.531 -17.086 12.979 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.837 5.837 3 C 0.133 3.867 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.207 1.207 12 S 2.785 3.215 13 O -0.940 6.940 14 O -0.976 6.976 15 N -0.841 5.841 16 C -0.011 4.011 17 C -0.164 4.164 18 C -0.140 4.140 19 C -0.710 4.710 20 H 0.164 0.836 21 S 2.706 3.294 22 N -0.925 5.925 23 O -0.941 6.941 24 O -0.946 6.946 25 C 0.008 3.992 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.237 0.763 39 H 0.249 0.751 40 H 0.131 0.869 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.909 -16.296 12.352 20.469 hybrid contribution -0.127 -0.226 -0.750 0.793 sum -1.036 -16.523 11.602 20.216 Atomic orbital electron populations 1.21357 0.80017 1.03521 1.00259 1.57661 1.14440 1.23297 1.88339 1.19107 0.90967 0.78745 0.97916 1.21496 1.36328 1.06386 0.92805 0.92117 1.24932 0.95022 0.96472 0.97532 1.69917 1.37190 1.15269 1.30902 0.86452 0.78066 0.78486 0.84510 1.19666 1.20936 1.20721 1.02208 0.73651 0.72956 0.72696 1.93637 1.40393 1.84873 1.75140 1.93514 1.67370 1.60450 1.76239 1.58461 1.28116 1.65024 1.32457 1.21449 0.90741 0.91416 0.97520 1.21795 0.97218 0.97852 0.99537 1.21341 0.96032 0.99492 0.97169 1.30737 1.16534 1.09499 1.14197 0.83579 1.04866 0.75791 0.73247 0.75451 1.53163 1.46572 1.24795 1.67939 1.93657 1.53682 1.76011 1.70798 1.93608 1.82380 1.71330 1.47246 1.21053 0.87383 0.92010 0.98727 0.94219 0.90252 0.91644 0.94533 0.94512 0.92626 0.88593 0.91132 0.90958 0.89973 0.89288 0.90582 0.76272 0.75116 0.86858 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.58 10.68 59.84 0.64 2.22 16 2 N -0.99 -20.33 3.23 -123.06 -0.40 -20.73 16 3 C 0.25 6.33 5.08 -5.19 -0.03 6.30 16 4 C -0.53 -14.89 9.38 -34.44 -0.32 -15.21 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 S 2.78 53.76 6.10 -107.50 -0.66 53.11 16 13 O -0.96 -22.36 15.70 -57.17 -0.90 -23.25 16 14 O -0.99 -19.60 15.33 -57.17 -0.88 -20.48 16 15 N -1.00 -14.50 3.35 -113.53 -0.38 -14.88 16 16 C 0.11 1.22 6.47 -3.72 -0.02 1.20 16 17 C -0.12 -0.98 6.08 -26.61 -0.16 -1.14 16 18 C -0.10 -0.74 5.03 -26.68 -0.13 -0.87 16 19 C -0.60 -5.93 2.92 -26.61 -0.08 -6.00 16 20 H 0.15 1.22 8.14 -51.93 -0.42 0.79 16 21 S 2.62 28.33 5.41 -107.50 -0.58 27.75 16 22 N -1.25 -7.78 9.28 60.35 0.56 -7.22 16 23 O -0.95 -14.77 18.10 -57.54 -1.04 -15.81 16 24 O -0.96 -13.00 18.02 -57.54 -1.04 -14.03 16 25 C 0.14 1.88 5.77 -3.71 -0.02 1.86 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 28 H 0.06 1.02 7.02 -51.93 -0.36 0.66 16 29 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 30 H 0.04 0.96 7.61 -51.93 -0.40 0.57 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.10 1.04 6.92 -51.93 -0.36 0.69 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.30 7.18 -51.93 -0.37 -0.07 16 38 H 0.41 1.28 7.94 -34.47 -0.27 1.01 16 39 H 0.42 2.16 8.96 -34.47 -0.31 1.85 16 40 H 0.11 1.79 6.92 -51.93 -0.36 1.43 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -39.38 357.37 -10.21 -49.60 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.78 Total: -0.99 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.23 Total: -9.96 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: 0.52 Total: -68.23 kcal Atomic # 8 Polarization: -69.72 SS G_CDS: -3.85 Total: -73.57 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 82.09 SS G_CDS: -1.24 Total: 80.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -39.38 -10.21 -49.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342376175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.880 kcal (2) G-P(sol) polarization free energy of solvation -39.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds