Wall clock time and date at job start Sat Apr 11 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46498 * 120.00128 * 2 1 4 4 C 1.50700 * 109.47257 * 275.00345 * 3 2 1 5 5 H 1.07994 * 119.99905 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99780 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00529 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99592 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47316 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47153 * 119.99967 * 8 6 4 11 11 H 1.48501 * 109.46868 * 240.00017 * 8 6 4 12 12 S 1.65600 * 120.00151 * 180.02562 * 2 1 3 13 13 O 1.42105 * 106.40193 * 156.45867 * 12 2 1 14 14 O 1.42097 * 106.40493 * 23.54264 * 12 2 1 15 15 N 1.65602 * 107.21829 * 269.99848 * 12 2 1 16 16 C 1.46919 * 120.62914 * 90.00410 * 15 12 2 17 17 C 1.53186 * 108.77954 * 126.41267 * 16 15 12 18 18 C 1.53046 * 109.31207 * 54.63337 * 17 16 15 19 19 C 1.53046 * 109.53579 * 298.63381 * 18 17 16 20 20 H 1.08998 * 109.49687 * 301.41384 * 19 18 17 21 21 S 1.81395 * 109.49540 * 181.31823 * 19 18 17 22 22 N 1.65597 * 104.45268 * 60.00303 * 21 19 18 23 23 O 1.42105 * 110.54040 * 171.62707 * 21 19 18 24 24 O 1.42106 * 110.54416 * 308.37389 * 21 19 18 25 25 C 1.46927 * 120.62907 * 270.02062 * 15 12 2 26 26 H 1.08995 * 109.47037 * 269.99302 * 1 2 3 27 27 H 1.08997 * 109.47383 * 30.00255 * 1 2 3 28 28 H 1.09005 * 109.47069 * 149.99979 * 1 2 3 29 29 H 1.09006 * 109.46720 * 35.00218 * 3 2 1 30 30 H 1.08998 * 109.47644 * 154.99859 * 3 2 1 31 31 H 0.97001 * 120.00466 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.59216 * 6.62192 * 16 15 12 33 33 H 1.09006 * 109.58250 * 246.20087 * 16 15 12 34 34 H 1.09004 * 109.49658 * 294.68126 * 17 16 15 35 35 H 1.08995 * 109.50405 * 174.58208 * 17 16 15 36 36 H 1.08993 * 109.45866 * 58.65556 * 18 17 16 37 37 H 1.09000 * 109.45949 * 178.61892 * 18 17 16 38 38 H 0.97005 * 119.99877 * 359.97438 * 22 21 19 39 39 H 0.96998 * 120.00179 * 179.97438 * 22 21 19 40 40 H 1.09000 * 109.58699 * 353.37481 * 25 15 12 41 41 H 1.08997 * 109.58189 * 113.65683 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1936 -2.2331 6 6 2.9997 2.9509 -1.6662 7 7 3.5016 3.6479 -0.6704 8 14 3.1774 3.5673 -3.4207 9 1 2.5300 2.6075 -4.3506 10 1 2.5257 4.8957 -3.5470 11 1 4.6182 3.6885 -3.7591 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5450 14 8 1.4114 -2.4063 -0.5456 15 7 2.5381 -1.8593 1.5810 16 6 1.5542 -2.6837 2.2956 17 6 2.2709 -3.8966 2.8971 18 6 3.4370 -3.4166 3.7643 19 6 4.4359 -2.6461 2.8978 20 1 4.7950 -3.2909 2.0958 21 16 5.8366 -2.1112 3.9188 22 7 6.4833 -3.5192 4.5034 23 8 6.8657 -1.5639 3.1060 24 8 5.3772 -1.4289 5.0776 25 6 3.7436 -1.4190 2.2963 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6500 2.0042 0.5895 30 1 3.1857 1.1177 0.4343 31 1 3.9644 4.4819 -0.8469 32 1 0.7859 -3.0213 1.5999 33 1 1.0962 -2.0976 3.0924 34 1 2.6504 -4.5296 2.0950 35 1 1.5718 -4.4653 3.5102 36 1 3.0597 -2.7638 4.5513 37 1 3.9338 -4.2768 4.2133 38 1 6.0871 -4.3714 4.2630 39 1 7.2582 -3.4917 5.0862 40 1 4.4201 -0.9220 1.6009 41 1 3.4645 -0.7278 3.0915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342376175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:57 Heat of formation + Delta-G solvation = -178.837911 kcal Electronic energy + Delta-G solvation = -27540.357710 eV Core-core repulsion = 23514.912086 eV Total energy + Delta-G solvation = -4025.445625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.60887 -38.43294 -38.13108 -37.25423 -37.04688 -36.92041 -34.53495 -34.33660 -33.45758 -32.41397 -29.69856 -26.83660 -25.76030 -24.96563 -24.20494 -21.91987 -20.41353 -19.98752 -19.23086 -18.64657 -18.49166 -18.24820 -18.15789 -17.33708 -16.87854 -16.58572 -16.43043 -15.87668 -15.73713 -15.25437 -15.09074 -14.92448 -14.76715 -14.21787 -14.08805 -13.93693 -13.52173 -13.38248 -13.25493 -13.19620 -13.11396 -13.07865 -13.06170 -12.97769 -12.96927 -12.49873 -12.44595 -12.33211 -12.06421 -12.00895 -11.76682 -11.69486 -11.34482 -11.26484 -10.63131 -10.19632 -9.80656 -8.23021 -6.35426 -0.88535 -0.42845 1.36566 1.39561 1.50817 1.87572 1.94191 2.36411 2.46863 2.61175 3.08016 3.12732 3.21539 3.30630 3.67477 3.76873 4.00004 4.08735 4.14255 4.16539 4.38819 4.54446 4.58898 4.69797 4.77315 4.84152 4.89048 4.96918 5.04087 5.09548 5.15290 5.28895 5.34224 5.39317 5.53272 5.67327 5.90433 6.06892 6.38902 6.73018 7.33900 8.84828 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013831 B = 0.004245 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.999576 B = 6594.057230 C = 7904.675676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.005 6.005 3 C 0.269 3.731 4 C -0.550 4.550 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.957 3.043 9 H -0.269 1.269 10 H -0.268 1.268 11 H -0.280 1.280 12 S 2.788 3.212 13 O -1.006 7.006 14 O -0.997 6.997 15 N -0.993 5.993 16 C 0.098 3.902 17 C -0.121 4.121 18 C -0.106 4.106 19 C -0.586 4.586 20 H 0.163 0.837 21 S 2.629 3.371 22 N -1.229 6.229 23 O -1.009 7.009 24 O -0.987 6.987 25 C 0.120 3.880 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.030 0.970 30 H 0.015 0.985 31 H 0.268 0.732 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.429 0.571 39 H 0.427 0.573 40 H 0.081 0.919 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.618 -19.320 14.181 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.847 5.847 3 C 0.145 3.855 4 C -0.590 4.590 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.193 1.193 10 H -0.193 1.193 11 H -0.206 1.206 12 S 2.798 3.202 13 O -0.990 6.990 14 O -0.981 6.981 15 N -0.834 5.834 16 C -0.026 4.026 17 C -0.161 4.161 18 C -0.144 4.144 19 C -0.699 4.699 20 H 0.180 0.820 21 S 2.722 3.278 22 N -0.909 5.909 23 O -0.998 6.998 24 O -0.976 6.976 25 C -0.008 4.008 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.259 0.741 39 H 0.259 0.741 40 H 0.099 0.901 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.017 -18.549 13.559 23.065 hybrid contribution 0.151 0.356 -1.044 1.113 sum -1.867 -18.193 12.515 22.161 Atomic orbital electron populations 1.21586 0.77887 1.03606 1.02618 1.57588 1.15935 1.21986 1.89146 1.18644 0.90379 0.80388 0.96058 1.21840 1.36375 1.06663 0.94083 0.92996 1.25757 0.94715 0.96751 1.01525 1.70007 1.37798 1.15731 1.32802 0.85526 0.78044 0.78491 0.79774 1.19338 1.19308 1.20561 1.01562 0.72460 0.72537 0.73683 1.93571 1.42726 1.85466 1.77233 1.93494 1.67259 1.60150 1.77238 1.58022 1.29158 1.65208 1.31033 1.21927 0.90306 0.92538 0.97827 1.21856 0.97779 0.96516 0.99974 1.21568 0.95434 1.00769 0.96637 1.30627 1.16201 1.08283 1.14753 0.81967 1.04092 0.75368 0.73729 0.74625 1.52630 1.46685 1.24156 1.67467 1.93598 1.56140 1.78006 1.72006 1.93571 1.82756 1.72956 1.48286 1.21183 0.87002 0.94216 0.98375 0.90707 0.91198 0.90515 0.95245 0.96682 0.92299 0.88743 0.89013 0.91030 0.86391 0.88785 0.86237 0.74061 0.74057 0.90057 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.88 10.68 127.77 1.36 4.25 16 2 N -1.01 -41.71 3.23 -543.24 -1.75 -43.46 16 3 C 0.27 13.87 5.08 85.63 0.43 14.30 16 4 C -0.55 -31.74 9.38 25.60 0.24 -31.50 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.70 5.46 84.66 0.46 1.16 16 7 N -0.92 -55.24 13.29 21.45 0.28 -54.95 16 8 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 S 2.79 109.31 6.10 -56.49 -0.34 108.97 16 13 O -1.01 -49.11 15.70 -128.00 -2.01 -51.12 16 14 O -1.00 -38.90 15.33 -128.00 -1.96 -40.86 16 15 N -0.99 -27.96 3.35 -513.09 -1.72 -29.68 16 16 C 0.10 1.82 6.47 86.36 0.56 2.38 16 17 C -0.12 -1.40 6.08 30.67 0.19 -1.21 16 18 C -0.11 -1.11 5.03 30.63 0.15 -0.96 16 19 C -0.59 -10.63 2.92 30.67 0.09 -10.55 16 20 H 0.16 2.41 8.14 -2.39 -0.02 2.39 16 21 S 2.63 55.13 5.41 -56.49 -0.31 54.82 16 22 N -1.23 -12.29 9.28 37.02 0.34 -11.95 16 23 O -1.01 -32.31 18.10 -127.65 -2.31 -34.62 16 24 O -0.99 -26.14 18.02 -127.65 -2.30 -28.44 16 25 C 0.12 3.32 5.77 86.36 0.50 3.82 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 27 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 28 H 0.08 2.31 7.02 -2.38 -0.02 2.30 16 29 H 0.03 1.54 8.11 -2.38 -0.02 1.52 16 30 H 0.02 0.84 7.61 -2.39 -0.02 0.82 16 31 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.09 1.81 6.92 -2.39 -0.02 1.79 16 33 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.12 0.27 7.18 -2.39 -0.02 0.25 16 38 H 0.43 1.08 7.94 -96.74 -0.77 0.31 16 39 H 0.43 3.47 8.96 -96.75 -0.87 2.60 16 40 H 0.08 2.77 6.92 -2.39 -0.02 2.76 16 41 H 0.10 2.39 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -88.70 357.37 -6.63 -95.33 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -0.57 Total: 6.79 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 3.99 Total: -18.30 kcal Atomic # 7 Polarization: -137.20 SS G_CDS: -2.84 Total: -140.04 kcal Atomic # 8 Polarization: -146.47 SS G_CDS: -8.58 Total: -155.05 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 164.44 SS G_CDS: -0.65 Total: 163.79 kcal Total: -88.70 -6.63 -95.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342376175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.510 kcal (2) G-P(sol) polarization free energy of solvation -88.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds