Wall clock time and date at job start Sat Apr 11 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35925 * 117.00346 * 2 1 4 4 C 1.38712 * 120.05678 * 0.02562 * 3 2 1 5 5 C 1.38149 * 119.95523 * 179.72286 * 4 3 2 6 6 C 1.38280 * 120.07624 * 0.52178 * 5 4 3 7 7 C 1.50700 * 119.93791 * 179.76465 * 6 5 4 8 8 N 1.46498 * 109.46769 * 269.71367 * 7 6 5 9 9 C 1.34777 * 119.99828 * 179.72341 * 8 7 6 10 10 O 1.21593 * 119.99949 * 0.28071 * 9 8 7 11 11 N 1.34777 * 120.00128 * 180.27942 * 9 8 7 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47138 * 179.97438 * 12 11 9 14 14 O 1.21294 * 119.99626 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00072 * 179.97438 * 13 12 11 16 16 C 1.37097 * 120.00087 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00028 * 0.02562 * 16 15 13 18 18 C 1.38942 * 120.00187 * 179.97438 * 16 15 13 19 19 N 1.31420 * 119.99963 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00160 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47001 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47080 * 120.00014 * 20 18 16 23 23 H 1.48502 * 109.47342 * 240.00097 * 20 18 16 24 24 C 1.38245 * 120.11874 * 359.47455 * 6 5 4 25 25 C 1.38254 * 120.04204 * 0.26786 * 24 6 5 26 26 Cl 1.73601 * 120.03895 * 179.97438 * 25 24 6 27 27 H 1.08991 * 109.47048 * 60.00017 * 1 2 3 28 28 H 1.08995 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46961 * 300.00272 * 1 2 3 30 30 H 1.08003 * 120.02082 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.96088 * 180.27209 * 5 4 3 32 32 H 1.09004 * 109.47210 * 149.71725 * 7 6 5 33 33 H 1.08994 * 109.47121 * 29.71695 * 7 6 5 34 34 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 35 35 H 0.97000 * 119.99549 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47602 * 299.99940 * 12 11 9 37 37 H 1.09006 * 109.46868 * 59.99976 * 12 11 9 38 38 H 0.97002 * 120.00040 * 0.02562 * 15 13 12 39 39 H 0.96997 * 119.99818 * 179.97438 * 19 18 16 40 40 H 1.08000 * 119.97501 * 180.23643 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2919 2.3752 0.0005 5 6 1.9213 3.6050 0.0063 6 6 3.3023 3.6767 0.0007 7 6 3.9856 5.0198 0.0017 8 7 4.2073 5.4558 -1.3792 9 6 4.8032 6.6395 -1.6247 10 8 5.1614 7.3432 -0.7000 11 7 5.0021 7.0433 -2.8951 12 6 5.6503 8.3297 -3.1619 13 6 5.7523 8.5417 -4.6505 14 8 5.3251 7.7010 -5.4134 15 7 6.3173 9.6657 -5.1340 16 6 6.4105 9.8583 -6.4881 17 1 6.0309 9.1095 -7.1675 18 6 6.9925 11.0173 -6.9866 19 7 7.4540 11.9288 -6.1599 20 14 7.1189 11.2800 -8.8317 21 1 6.5294 10.1151 -9.5390 22 1 6.3807 12.5124 -9.2079 23 1 8.5466 11.4219 -9.2148 24 6 4.0571 2.5185 0.0002 25 6 3.4323 1.2852 -0.0002 26 17 4.3802 -0.1692 -0.0015 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2133 2.3202 0.0005 31 1 1.3342 4.5114 0.0112 32 1 4.9435 4.9398 0.5156 33 1 3.3571 5.7469 0.5158 34 1 3.9213 4.8947 -2.1169 35 1 4.7167 6.4817 -3.6327 36 1 5.0603 9.1326 -2.7198 37 1 6.6493 8.3305 -2.7258 38 1 6.6586 10.3381 -4.5238 39 1 7.8606 12.7377 -6.5079 40 1 5.1355 2.5772 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345626233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:05 Heat of formation + Delta-G solvation = -84.957224 kcal Electronic energy + Delta-G solvation = -25395.981812 eV Core-core repulsion = 21237.119502 eV Total energy + Delta-G solvation = -4158.862310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77251 -39.82537 -38.42192 -38.02314 -36.78929 -34.77468 -34.35218 -33.63515 -31.40611 -31.39166 -31.06713 -28.33382 -27.48580 -25.58077 -24.26265 -23.22607 -21.77092 -20.73605 -19.58111 -18.79572 -18.46431 -17.99073 -17.02928 -16.55844 -16.31096 -15.87077 -15.54362 -15.49555 -14.87638 -14.68219 -14.51537 -14.45095 -14.29614 -14.03325 -13.84572 -13.57319 -13.44062 -12.89212 -12.51921 -12.18555 -12.13133 -11.95289 -11.86779 -11.62851 -11.57353 -11.54193 -11.15642 -11.13897 -10.40618 -10.32456 -10.09256 -9.64141 -9.36827 -9.19195 -8.64539 -8.61473 -8.60635 -8.09259 -6.50889 -3.92845 0.66759 0.71568 1.80727 2.67733 2.75251 3.10606 3.22172 3.24676 3.30320 3.39231 3.75942 4.10077 4.21377 4.24962 4.41050 4.50632 4.64870 4.66502 4.77090 4.85713 4.91074 5.00170 5.12166 5.17935 5.40148 5.44998 5.57068 5.67022 5.92419 6.01341 6.04398 6.08996 6.11737 6.44101 6.72430 6.75574 7.08337 7.46847 7.93376 8.22717 8.45923 8.78385 9.05478 9.40385 9.88226 10.66070 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.020501 B = 0.001693 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.427320 B =16535.921281 C =16788.775597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.143 3.857 4 C -0.200 4.200 5 C -0.052 4.052 6 C -0.131 4.131 7 C 0.187 3.813 8 N -0.747 5.747 9 C 0.705 3.295 10 O -0.598 6.598 11 N -0.724 5.724 12 C 0.129 3.871 13 C 0.429 3.571 14 O -0.598 6.598 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.894 5.894 20 Si 0.932 3.068 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.051 4.051 25 C -0.072 4.072 26 Cl -0.055 7.055 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.398 0.602 35 H 0.407 0.593 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.396 0.604 39 H 0.273 0.727 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.838 -20.927 15.399 28.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.096 3.904 4 C -0.219 4.219 5 C -0.071 4.071 6 C -0.132 4.132 7 C 0.063 3.937 8 N -0.404 5.404 9 C 0.405 3.595 10 O -0.477 6.477 11 N -0.381 5.381 12 C 0.000 4.000 13 C 0.214 3.786 14 O -0.485 6.485 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.535 5.535 20 Si 0.759 3.241 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.070 4.070 25 C -0.099 4.099 26 Cl -0.026 7.026 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.077 0.923 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.232 0.768 35 H 0.244 0.756 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.083 0.917 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.512 -20.936 15.686 28.999 hybrid contribution -0.151 0.110 -1.211 1.225 sum -12.662 -20.826 14.475 28.348 Atomic orbital electron populations 1.23149 0.77777 1.04443 1.01639 1.86172 1.21769 1.25852 1.88013 1.18753 0.90546 0.85275 0.95810 1.21224 1.00436 0.91507 1.08731 1.21043 0.93841 0.97562 0.94668 1.19777 0.93567 0.94573 1.05324 1.19893 1.00172 0.90645 0.82971 1.45111 1.66032 1.20959 1.08288 1.15841 0.78881 0.81357 0.83457 1.90913 1.57630 1.55673 1.43451 1.44774 1.64505 1.22618 1.06221 1.20787 0.98606 0.85174 0.95416 1.19776 0.85255 0.84586 0.88944 1.90493 1.54082 1.45062 1.58825 1.41795 1.51145 1.17202 1.08307 1.19774 1.37060 1.04482 0.82046 0.87641 1.25327 0.96473 0.95353 1.00629 1.69626 1.39244 1.09334 1.35257 0.85757 0.77987 0.78474 0.81860 1.19157 1.20639 1.20623 1.20913 1.00880 0.89137 0.96102 1.20157 0.88774 0.89051 1.11951 1.98378 1.71414 1.35769 1.97084 0.92254 0.87842 0.92337 0.84328 0.84624 0.90549 0.90501 0.76830 0.75578 0.89992 0.89990 0.77008 0.91655 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.50 9.96 -19.50 -0.19 -2.70 16 3 C 0.14 1.22 6.68 -39.19 -0.26 0.96 16 4 C -0.20 -1.37 9.04 -39.44 -0.36 -1.73 16 5 C -0.05 -0.37 9.69 -39.60 -0.38 -0.75 16 6 C -0.13 -1.06 5.25 -104.60 -0.55 -1.61 16 7 C 0.19 1.80 5.80 -5.19 -0.03 1.77 16 8 N -0.75 -8.53 5.55 -66.41 -0.37 -8.90 16 9 C 0.71 11.10 8.57 -86.92 -0.74 10.36 16 10 O -0.60 -11.38 16.34 5.28 0.09 -11.29 16 11 N -0.72 -11.99 5.53 -66.41 -0.37 -12.36 16 12 C 0.13 2.37 6.15 -5.19 -0.03 2.34 16 13 C 0.43 9.79 7.85 -10.98 -0.09 9.71 16 14 O -0.60 -15.23 15.24 5.55 0.08 -15.15 16 15 N -0.55 -13.59 5.29 -10.96 -0.06 -13.65 16 16 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 17 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 18 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 19 N -0.89 -23.85 13.05 55.50 0.72 -23.12 16 20 Si 0.93 20.51 29.55 -169.99 -5.02 15.48 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 C -0.05 -0.43 9.48 -39.57 -0.38 -0.81 16 25 C -0.07 -0.66 6.33 -39.36 -0.25 -0.91 16 26 Cl -0.06 -0.53 28.50 -51.86 -1.48 -2.01 16 27 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 28 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 30 H 0.14 0.63 6.30 -52.48 -0.33 0.30 16 31 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.40 3.85 8.48 -40.82 -0.35 3.50 16 35 H 0.41 6.57 7.45 -40.82 -0.30 6.27 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.40 9.42 7.90 -40.82 -0.32 9.10 16 39 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -32.98 367.80 -7.93 -40.91 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -4.56 Total: 14.65 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: -2.32 Total: 12.58 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.07 Total: -58.03 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.02 Total: -29.14 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.48 Total: -2.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.98 -7.93 -40.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345626233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.050 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds