Wall clock time and date at job start Sat Apr 11 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35925 * 117.00346 * 2 1 4 4 C 1.38712 * 120.05678 * 0.02562 * 3 2 1 5 5 C 1.38149 * 119.95523 * 179.72286 * 4 3 2 6 6 C 1.38280 * 120.07624 * 0.52178 * 5 4 3 7 7 C 1.50700 * 119.93791 * 179.76465 * 6 5 4 8 8 N 1.46498 * 109.46769 * 269.71367 * 7 6 5 9 9 C 1.34777 * 119.99828 * 179.72341 * 8 7 6 10 10 O 1.21593 * 119.99949 * 0.28071 * 9 8 7 11 11 N 1.34777 * 120.00128 * 180.27942 * 9 8 7 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47138 * 179.97438 * 12 11 9 14 14 O 1.21294 * 119.99626 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00072 * 179.97438 * 13 12 11 16 16 C 1.37097 * 120.00087 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00028 * 0.02562 * 16 15 13 18 18 C 1.38942 * 120.00187 * 179.97438 * 16 15 13 19 19 N 1.31420 * 119.99963 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00160 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47001 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47080 * 120.00014 * 20 18 16 23 23 H 1.48502 * 109.47342 * 240.00097 * 20 18 16 24 24 C 1.38245 * 120.11874 * 359.47455 * 6 5 4 25 25 C 1.38254 * 120.04204 * 0.26786 * 24 6 5 26 26 Cl 1.73601 * 120.03895 * 179.97438 * 25 24 6 27 27 H 1.08991 * 109.47048 * 60.00017 * 1 2 3 28 28 H 1.08995 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46961 * 300.00272 * 1 2 3 30 30 H 1.08003 * 120.02082 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.96088 * 180.27209 * 5 4 3 32 32 H 1.09004 * 109.47210 * 149.71725 * 7 6 5 33 33 H 1.08994 * 109.47121 * 29.71695 * 7 6 5 34 34 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 35 35 H 0.97000 * 119.99549 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47602 * 299.99940 * 12 11 9 37 37 H 1.09006 * 109.46868 * 59.99976 * 12 11 9 38 38 H 0.97002 * 120.00040 * 0.02562 * 15 13 12 39 39 H 0.96997 * 119.99818 * 179.97438 * 19 18 16 40 40 H 1.08000 * 119.97501 * 180.23643 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2919 2.3752 0.0005 5 6 1.9213 3.6050 0.0063 6 6 3.3023 3.6767 0.0007 7 6 3.9856 5.0198 0.0017 8 7 4.2073 5.4558 -1.3792 9 6 4.8032 6.6395 -1.6247 10 8 5.1614 7.3432 -0.7000 11 7 5.0021 7.0433 -2.8951 12 6 5.6503 8.3297 -3.1619 13 6 5.7523 8.5417 -4.6505 14 8 5.3251 7.7010 -5.4134 15 7 6.3173 9.6657 -5.1340 16 6 6.4105 9.8583 -6.4881 17 1 6.0309 9.1095 -7.1675 18 6 6.9925 11.0173 -6.9866 19 7 7.4540 11.9288 -6.1599 20 14 7.1189 11.2800 -8.8317 21 1 6.5294 10.1151 -9.5390 22 1 6.3807 12.5124 -9.2079 23 1 8.5466 11.4219 -9.2148 24 6 4.0571 2.5185 0.0002 25 6 3.4323 1.2852 -0.0002 26 17 4.3802 -0.1692 -0.0015 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2133 2.3202 0.0005 31 1 1.3342 4.5114 0.0112 32 1 4.9435 4.9398 0.5156 33 1 3.3571 5.7469 0.5158 34 1 3.9213 4.8947 -2.1169 35 1 4.7167 6.4817 -3.6327 36 1 5.0603 9.1326 -2.7198 37 1 6.6493 8.3305 -2.7258 38 1 6.6586 10.3381 -4.5238 39 1 7.8606 12.7377 -6.5079 40 1 5.1355 2.5772 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345626233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:05 Heat of formation + Delta-G solvation = -109.223174 kcal Electronic energy + Delta-G solvation = -25397.034063 eV Core-core repulsion = 21237.119502 eV Total energy + Delta-G solvation = -4159.914561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.43807 -41.02786 -40.00990 -38.84150 -37.48330 -36.24830 -35.65906 -35.22840 -33.35593 -31.97178 -31.87446 -29.34877 -28.39621 -26.75065 -25.78199 -23.80126 -22.44257 -21.95263 -21.33673 -20.10647 -19.65567 -19.25917 -17.69201 -17.59012 -17.40822 -16.83561 -16.79017 -16.58240 -16.44737 -15.91469 -15.77569 -15.52907 -15.14641 -15.13045 -14.95508 -14.71562 -14.16943 -13.95178 -13.91340 -13.53576 -13.36424 -12.98516 -12.90135 -12.77437 -12.53897 -12.42979 -12.11006 -12.10381 -12.06212 -11.82310 -11.56448 -11.42255 -10.53459 -10.40855 -10.08410 -9.96499 -9.79162 -9.25366 -8.49654 -5.99637 0.05852 0.11125 1.15163 1.36243 1.43742 1.57100 1.68357 1.91887 2.15298 2.22163 2.29498 2.53295 3.10716 3.17735 3.42600 3.57218 3.71842 3.90347 4.14923 4.22047 4.24096 4.37506 4.40643 4.47009 4.49754 4.53957 4.70600 4.76040 4.79838 4.92381 5.11717 5.34006 5.40528 5.42354 5.44840 5.55847 5.93132 5.97771 6.23265 6.50042 7.04701 7.05408 7.44930 7.55948 7.96768 8.67446 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.020501 B = 0.001693 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.427320 B =16535.921281 C =16788.775597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.137 3.863 4 C -0.196 4.196 5 C -0.048 4.048 6 C -0.133 4.133 7 C 0.189 3.811 8 N -0.729 5.729 9 C 0.706 3.294 10 O -0.630 6.630 11 N -0.725 5.725 12 C 0.142 3.858 13 C 0.434 3.566 14 O -0.624 6.624 15 N -0.560 5.560 16 C -0.336 4.336 17 H 0.086 0.914 18 C -0.012 4.012 19 N -0.916 5.916 20 Si 0.997 3.003 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.272 1.272 24 C -0.054 4.054 25 C -0.092 4.092 26 Cl -0.067 7.067 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.165 0.835 31 H 0.154 0.846 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.408 0.592 35 H 0.410 0.590 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.399 0.601 39 H 0.279 0.721 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.112 -21.152 15.513 29.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.089 3.911 4 C -0.214 4.214 5 C -0.066 4.066 6 C -0.134 4.134 7 C 0.066 3.934 8 N -0.386 5.386 9 C 0.406 3.594 10 O -0.512 6.512 11 N -0.382 5.382 12 C 0.013 3.987 13 C 0.221 3.779 14 O -0.513 6.513 15 N -0.196 5.196 16 C -0.465 4.465 17 H 0.104 0.896 18 C -0.212 4.212 19 N -0.556 5.556 20 Si 0.820 3.180 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.073 4.073 25 C -0.119 4.119 26 Cl -0.038 7.038 27 H 0.088 0.912 28 H 0.135 0.865 29 H 0.090 0.910 30 H 0.182 0.818 31 H 0.172 0.828 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.244 0.756 35 H 0.247 0.753 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.809 -21.200 15.820 29.840 hybrid contribution 0.159 0.085 -1.178 1.192 sum -13.650 -21.115 14.642 29.096 Atomic orbital electron populations 1.23437 0.75813 1.05869 1.02750 1.86153 1.23890 1.25927 1.87881 1.18954 0.90497 0.86070 0.95529 1.21489 1.01656 0.90663 1.07641 1.21273 0.93447 0.98452 0.93458 1.19598 0.94006 0.93414 1.06401 1.19954 1.00284 0.91512 0.81662 1.45046 1.64448 1.19462 1.09629 1.15912 0.78870 0.82122 0.82525 1.90893 1.59138 1.56995 1.44172 1.44699 1.64703 1.22046 1.06792 1.20583 0.99646 0.86601 0.91825 1.20454 0.83403 0.83382 0.90664 1.90470 1.54750 1.45748 1.60286 1.41840 1.51953 1.17987 1.07773 1.19766 1.38768 1.04961 0.83014 0.89595 1.26122 0.95565 0.94644 1.04877 1.69689 1.39309 1.09660 1.36944 0.84812 0.78270 0.78318 0.76575 1.19460 1.19660 1.19711 1.20954 1.01137 0.89151 0.96072 1.20324 0.89332 0.88832 1.13389 1.98366 1.71773 1.36476 1.97222 0.91245 0.86456 0.91005 0.81787 0.82817 0.90982 0.90158 0.75592 0.75277 0.88905 0.89061 0.76673 0.91110 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.21 16 2 O -0.33 -4.92 9.96 -92.70 -0.92 -5.84 16 3 C 0.14 2.14 6.68 22.52 0.15 2.30 16 4 C -0.20 -2.21 9.04 22.36 0.20 -2.00 16 5 C -0.05 -0.56 9.69 22.26 0.22 -0.34 16 6 C -0.13 -1.94 5.25 -19.85 -0.10 -2.04 16 7 C 0.19 3.36 5.80 85.63 0.50 3.86 16 8 N -0.73 -15.58 5.55 -482.30 -2.68 -18.26 16 9 C 0.71 21.40 8.57 179.05 1.53 22.93 16 10 O -0.63 -23.38 16.34 -4.01 -0.07 -23.44 16 11 N -0.72 -23.30 5.53 -482.28 -2.67 -25.97 16 12 C 0.14 5.14 6.15 85.63 0.53 5.67 16 13 C 0.43 19.84 7.85 87.66 0.69 20.53 16 14 O -0.62 -31.97 15.24 -3.07 -0.05 -32.02 16 15 N -0.56 -27.95 5.29 -306.99 -1.62 -29.58 16 16 C -0.34 -18.43 9.68 84.04 0.81 -17.61 16 17 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 18 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 19 N -0.92 -48.50 13.05 21.66 0.28 -48.22 16 20 Si 1.00 41.66 29.55 68.60 2.03 43.68 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 C -0.05 -0.87 9.48 22.28 0.21 -0.66 16 25 C -0.09 -1.63 6.33 22.41 0.14 -1.49 16 26 Cl -0.07 -1.28 28.50 -2.72 -0.08 -1.36 16 27 H 0.07 0.29 7.66 -2.39 -0.02 0.27 16 28 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.25 7.66 -2.38 -0.02 0.24 16 30 H 0.16 0.94 6.30 -2.91 -0.02 0.92 16 31 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.07 1.38 8.08 -2.38 -0.02 1.36 16 33 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 34 H 0.41 7.21 8.48 -92.71 -0.79 6.42 16 35 H 0.41 12.87 7.45 -92.71 -0.69 12.18 16 36 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 38 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 39 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 40 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -70.17 367.80 -0.39 -70.57 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -1.08 Total: 38.22 kcal Atomic # 6 Polarization: 25.76 SS G_CDS: 6.46 Total: 32.21 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -6.69 Total: -122.02 kcal Atomic # 8 Polarization: -60.27 SS G_CDS: -1.04 Total: -61.30 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -70.17 -0.39 -70.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345626233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.656 kcal (2) G-P(sol) polarization free energy of solvation -70.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds