Wall clock time and date at job start Sat Apr 11 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42894 * 109.47106 * 2 1 4 4 C 1.35997 * 117.00433 * 179.97438 * 3 2 1 5 5 C 1.38691 * 119.98830 * 0.02562 * 4 3 2 6 6 C 1.38105 * 120.02828 * 179.97438 * 5 4 3 7 7 C 1.38839 * 120.00614 * 359.97438 * 6 5 4 8 8 N 1.40152 * 120.01199 * 179.97438 * 7 6 5 9 9 C 1.34783 * 119.99564 * 33.27816 * 8 7 6 10 10 O 1.21588 * 120.00301 * 5.32506 * 9 8 7 11 11 N 1.34773 * 119.99499 * 185.31461 * 9 8 7 12 12 C 1.46509 * 119.99712 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46994 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99917 * 0.02562 * 13 12 11 15 15 N 1.34770 * 119.99531 * 180.02562 * 13 12 11 16 16 C 1.37101 * 119.99751 * 180.02562 * 15 13 12 17 17 H 1.08006 * 119.99915 * 359.97438 * 16 15 13 18 18 C 1.38951 * 120.00168 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99748 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00207 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46952 * 89.99568 * 20 18 16 22 22 H 1.48491 * 109.47271 * 209.99567 * 20 18 16 23 23 H 1.48506 * 109.46871 * 330.00102 * 20 18 16 24 24 C 1.38814 * 119.98034 * 359.76805 * 7 6 5 25 25 C 1.38209 * 119.97227 * 0.50624 * 24 7 6 26 26 Cl 1.73602 * 120.00195 * 179.74224 * 25 24 7 27 27 H 1.09000 * 109.47781 * 299.99965 * 1 2 3 28 28 H 1.09003 * 109.46975 * 60.00541 * 1 2 3 29 29 H 1.08999 * 109.47400 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47149 * 239.99366 * 2 1 3 31 31 H 1.09003 * 109.46975 * 119.99459 * 2 1 3 32 32 H 1.08003 * 119.98331 * 0.02562 * 5 4 3 33 33 H 1.08006 * 119.99492 * 180.02562 * 6 5 4 34 34 H 0.97000 * 120.00244 * 213.28408 * 8 7 6 35 35 H 0.96996 * 120.00446 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47100 * 300.00060 * 12 11 9 37 37 H 1.09005 * 109.46675 * 60.00444 * 12 11 9 38 38 H 0.96999 * 120.00443 * 0.02562 * 15 13 12 39 39 H 0.96998 * 119.99847 * 180.02562 * 19 18 16 40 40 H 1.08004 * 120.01167 * 180.25312 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.1992 0.4255 0.0005 6 6 5.5685 0.6056 0.0005 7 6 6.1001 1.8882 0.0000 8 7 7.4896 2.0711 0.0006 9 6 8.2854 1.1911 -0.6390 10 8 7.7945 0.2942 -1.2969 11 7 9.6252 1.3056 -0.5494 12 6 10.4902 0.3495 -1.2451 13 6 11.9336 0.6960 -0.9846 14 8 12.2122 1.6476 -0.2861 15 7 12.9146 -0.0516 -1.5277 16 6 14.2276 0.2632 -1.2903 17 1 14.4758 1.1106 -0.6683 18 6 15.2392 -0.5072 -1.8506 19 7 14.9372 -1.5380 -2.6078 20 14 17.0282 -0.0778 -1.5277 21 1 17.4972 -0.7918 -0.3130 22 1 17.8536 -0.4874 -2.6922 23 1 17.1561 1.3872 -1.3210 24 6 5.2549 2.9894 -0.0054 25 6 3.8848 2.8082 0.0004 26 17 2.8271 4.1848 0.0004 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.7860 -0.5723 -0.0003 33 1 6.2258 -0.2514 0.0001 34 1 7.8786 2.8309 0.4613 35 1 10.0169 2.0210 -0.0244 36 1 10.2869 -0.6571 -0.8796 37 1 10.2932 0.3939 -2.3163 38 1 12.6917 -0.8125 -2.0866 39 1 15.6433 -2.0760 -2.9987 40 1 5.6679 3.9873 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348798706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:09 Heat of formation + Delta-G solvation = -104.486734 kcal Electronic energy + Delta-G solvation = -25626.118719 eV Core-core repulsion = 21466.409545 eV Total energy + Delta-G solvation = -4159.709173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.89823 -40.93494 -40.11441 -38.67845 -37.47018 -36.24834 -35.50129 -35.28835 -33.36463 -32.63282 -31.87944 -30.11911 -28.60763 -26.38562 -25.14428 -23.98342 -22.70470 -21.92204 -21.37326 -20.13346 -19.73339 -19.42024 -18.67124 -17.51351 -17.23659 -17.07134 -16.75560 -16.66695 -16.32939 -15.88062 -15.67711 -15.58521 -15.29717 -14.97243 -14.83466 -14.68542 -13.96646 -13.89640 -13.63824 -13.53485 -13.36322 -13.29151 -12.99276 -12.90204 -12.62007 -12.44598 -12.14277 -12.12052 -11.85615 -11.79537 -11.55990 -11.45558 -10.89641 -10.55183 -10.24860 -10.07804 -9.93345 -8.77357 -8.50291 -6.00301 0.06296 0.15789 1.04429 1.37260 1.42794 1.48521 1.57421 1.88209 1.96074 2.16791 2.29040 2.60032 2.97667 3.17261 3.22650 3.68850 3.87015 4.07747 4.08919 4.16898 4.21949 4.30199 4.40403 4.43267 4.46468 4.53323 4.59726 4.87838 4.97522 5.08340 5.12486 5.20484 5.25341 5.29202 5.39516 5.68822 5.84825 5.93193 6.29421 6.48823 6.86504 7.04599 7.34889 7.46231 7.95479 8.66457 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.028750 B = 0.001733 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.693925 B =16151.595645 C =16959.167856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.042 3.958 3 O -0.318 6.318 4 C 0.117 3.883 5 C -0.173 4.173 6 C -0.087 4.087 7 C 0.136 3.864 8 N -0.670 5.670 9 C 0.707 3.293 10 O -0.608 6.608 11 N -0.716 5.716 12 C 0.141 3.859 13 C 0.433 3.567 14 O -0.624 6.624 15 N -0.559 5.559 16 C -0.337 4.337 17 H 0.087 0.913 18 C -0.010 4.010 19 N -0.915 5.915 20 Si 0.996 3.004 21 H -0.271 1.271 22 H -0.273 1.273 23 H -0.270 1.270 24 C -0.096 4.096 25 C -0.062 4.062 26 Cl -0.055 7.055 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.133 0.867 34 H 0.424 0.576 35 H 0.413 0.587 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.206 3.900 5.615 27.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.232 6.232 4 C 0.070 3.930 5 C -0.193 4.193 6 C -0.107 4.107 7 C 0.040 3.960 8 N -0.319 5.319 9 C 0.408 3.592 10 O -0.488 6.488 11 N -0.373 5.373 12 C 0.013 3.987 13 C 0.220 3.780 14 O -0.512 6.512 15 N -0.194 5.194 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.211 4.211 19 N -0.555 5.555 20 Si 0.820 3.180 21 H -0.196 1.196 22 H -0.198 1.198 23 H -0.195 1.195 24 C -0.117 4.117 25 C -0.090 4.090 26 Cl -0.026 7.026 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.177 0.823 33 H 0.151 0.849 34 H 0.263 0.737 35 H 0.251 0.749 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -26.489 3.813 5.370 27.295 hybrid contribution 1.344 0.230 0.105 1.367 sum -25.145 4.043 5.476 26.050 Atomic orbital electron populations 1.21789 0.91417 1.04120 1.03191 1.23129 0.96992 0.80573 1.02537 1.86148 1.17406 1.31349 1.88335 1.18698 0.83812 0.92293 0.98186 1.21243 0.92699 0.98872 1.06448 1.21155 0.95174 0.96815 0.97585 1.17283 0.81881 0.93449 1.03350 1.42314 1.03803 1.29698 1.56134 1.15810 0.81201 0.82365 0.79864 1.90912 1.74574 1.36876 1.46445 1.44656 1.03432 1.34443 1.54759 1.20643 0.85953 0.93504 0.98593 1.20414 0.87773 0.85296 0.84501 1.90476 1.84329 1.32266 1.44126 1.41825 1.05384 1.27899 1.44330 1.19737 0.82107 1.13999 1.30806 0.89528 1.26108 1.04418 0.95128 0.95432 1.69676 1.35894 1.17643 1.32324 0.84877 0.76428 0.78627 0.78111 1.19601 1.19763 1.19481 1.20667 0.89771 0.99589 1.01700 1.19918 0.90863 0.86633 1.11570 1.98360 1.65627 1.41462 1.97119 0.91767 0.91976 0.88239 0.91099 0.90683 0.82305 0.84914 0.73723 0.74873 0.88511 0.88713 0.76653 0.91098 0.81957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 71.98 0.74 -0.55 16 2 C 0.04 0.50 5.46 71.98 0.39 0.89 16 3 O -0.32 -5.99 9.59 -93.52 -0.90 -6.89 16 4 C 0.12 2.40 6.68 22.51 0.15 2.55 16 5 C -0.17 -3.37 9.03 22.35 0.20 -3.17 16 6 C -0.09 -2.02 8.65 22.38 0.19 -1.83 16 7 C 0.14 3.02 6.28 38.09 0.24 3.26 16 8 N -0.67 -14.61 5.36 -317.07 -1.70 -16.31 16 9 C 0.71 20.50 8.30 179.05 1.49 21.99 16 10 O -0.61 -21.20 14.03 -3.99 -0.06 -21.25 16 11 N -0.72 -21.52 5.53 -482.27 -2.67 -24.19 16 12 C 0.14 4.83 6.15 85.63 0.53 5.36 16 13 C 0.43 19.11 7.85 87.66 0.69 19.80 16 14 O -0.62 -30.93 15.24 -3.06 -0.05 -30.98 16 15 N -0.56 -27.20 5.29 -306.98 -1.62 -28.82 16 16 C -0.34 -18.17 9.68 84.04 0.81 -17.36 16 17 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 18 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 19 N -0.92 -47.80 13.05 21.66 0.28 -47.52 16 20 Si 1.00 41.07 29.55 68.60 2.03 43.10 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 22 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 C -0.10 -1.84 9.74 22.40 0.22 -1.62 16 25 C -0.06 -1.28 6.33 22.40 0.14 -1.13 16 26 Cl -0.05 -1.06 28.50 -2.72 -0.08 -1.14 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 31 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 32 H 0.16 2.29 6.29 -2.91 -0.02 2.28 16 33 H 0.13 3.50 6.40 -2.91 -0.02 3.49 16 34 H 0.42 6.60 8.84 -92.71 -0.82 5.78 16 35 H 0.41 11.98 7.46 -92.71 -0.69 11.28 16 36 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 38 H 0.40 18.65 7.90 -92.71 -0.73 17.92 16 39 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 40 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -66.78 363.84 0.40 -66.38 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: -1.11 Total: 39.48 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: 6.26 Total: 28.13 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -5.71 Total: -116.84 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -1.00 Total: -59.12 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -66.78 0.40 -66.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348798706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.102 kcal (2) G-P(sol) polarization free energy of solvation -66.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds