Wall clock time and date at job start Sat Apr 11 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34896 * 126.45738 * 2 1 4 4 N 1.30642 * 109.01568 * 179.82605 * 3 2 1 5 5 C 1.33696 * 109.56233 * 0.44561 * 4 3 2 6 6 N 1.48020 * 126.06740 * 179.75790 * 5 4 3 7 7 O 1.31710 * 119.99881 * 179.97438 * 6 5 4 8 8 O 1.31699 * 120.00282 * 359.96637 * 6 5 4 9 9 C 1.36098 * 107.86700 * 359.72841 * 5 4 3 10 10 C 1.47856 * 126.76922 * 179.97438 * 9 5 4 11 11 N 1.31075 * 126.35179 * 180.02562 * 10 9 5 12 12 O 1.21269 * 110.28509 * 180.02562 * 11 10 9 13 13 C 1.34203 * 109.96834 * 359.97438 * 12 11 10 14 14 C 1.47876 * 126.53329 * 179.97438 * 13 12 11 15 15 C 1.40084 * 120.00362 * 179.75828 * 14 13 12 16 16 C 1.38497 * 120.45426 * 179.71610 * 15 14 13 17 17 C 1.37564 * 120.45533 * 0.55704 * 16 15 14 18 18 C 1.41316 * 119.98748 * 359.71966 * 17 16 15 19 19 C 1.40390 * 120.22317 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00179 * 335.77540 * 19 18 17 21 21 C 1.46536 * 119.99842 * 155.76466 * 19 18 17 22 22 N 1.29506 * 119.99938 * 344.37400 * 21 19 18 23 23 Si 1.86800 * 119.99635 * 164.37149 * 21 19 18 24 24 H 1.48497 * 109.47299 * 60.00570 * 23 21 19 25 25 H 1.48508 * 109.46655 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47119 * 300.00313 * 23 21 19 27 27 C 1.38806 * 119.99829 * 0.02562 * 14 13 12 28 28 N 1.31910 * 106.93761 * 359.73737 * 13 12 11 29 29 H 1.08999 * 109.47098 * 269.68894 * 1 2 3 30 30 H 1.09000 * 109.47151 * 149.68890 * 1 2 3 31 31 H 1.08998 * 109.47064 * 29.68517 * 1 2 3 32 32 H 1.08007 * 125.49039 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.76921 * 359.97438 * 15 14 13 34 34 H 1.08000 * 119.77101 * 180.25319 * 16 15 14 35 35 H 1.07998 * 120.00621 * 179.70235 * 17 16 15 36 36 H 0.96998 * 119.99685 * 179.97438 * 22 21 19 37 37 H 1.07997 * 120.22570 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2665 1.0850 0.0000 4 7 3.5129 0.6934 0.0037 5 6 3.5624 -0.6426 -0.0035 6 7 4.7903 -1.4692 -0.0074 7 8 4.6997 -2.7831 -0.0141 8 8 5.9735 -0.8908 -0.0042 9 6 2.2834 -1.1079 -0.0061 10 6 1.8565 -2.5234 -0.0143 11 7 0.6215 -2.9625 -0.0172 12 8 0.6064 -4.1751 -0.0237 13 6 1.8620 -4.6491 -0.0262 14 6 2.2659 -6.0716 -0.0332 15 6 3.6242 -6.4140 -0.0402 16 6 4.0130 -7.7433 -0.0409 17 6 3.0706 -8.7454 -0.0463 18 6 1.6951 -8.4215 -0.0451 19 6 0.7291 -9.4402 -0.0511 20 1 0.9766 -10.4168 -0.4401 21 6 -0.6150 -9.1785 0.4706 22 7 -0.8329 -8.1332 1.2036 23 14 -2.0140 -10.3525 0.0784 24 1 -1.6853 -11.7048 0.5963 25 1 -3.2624 -9.8664 0.7193 26 1 -2.2068 -10.4190 -1.3925 27 6 1.2990 -7.0675 -0.0385 28 7 2.6672 -3.6042 -0.0264 29 1 -0.3633 -0.0056 1.0276 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5089 32 1 1.9318 2.1119 -0.0004 33 1 4.3733 -5.6361 -0.0409 34 1 5.0633 -7.9948 -0.0422 35 1 3.3819 -9.7796 -0.0516 36 1 -1.7227 -7.9598 1.5486 37 1 0.2508 -6.8076 -0.0379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350902165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:16 Heat of formation + Delta-G solvation = 208.054164 kcal Electronic energy + Delta-G solvation = -28465.273925 eV Core-core repulsion = 24218.010048 eV Total energy + Delta-G solvation = -4247.263877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -45.21063 -43.17882 -38.38963 -37.61657 -35.77270 -34.98833 -33.98111 -33.87528 -32.83882 -30.80464 -29.98067 -29.30197 -28.43422 -26.31080 -25.25315 -24.31768 -23.91873 -21.96138 -21.49534 -20.74154 -20.17092 -18.67865 -17.90662 -17.88640 -17.60735 -16.94124 -16.83918 -16.67071 -15.57135 -15.38232 -15.19406 -14.91132 -14.76406 -14.39894 -13.60080 -13.54429 -13.37132 -12.90728 -12.70776 -12.29821 -12.06662 -11.88361 -11.52347 -11.43944 -11.27928 -11.18783 -10.91375 -10.80972 -10.68996 -10.60066 -10.27979 -10.21842 -10.14257 -9.85504 -9.79221 -9.42947 -9.22776 -7.67947 -7.61818 -7.06055 -4.48296 -0.45354 0.74284 0.90269 1.25349 1.77179 2.03712 2.48939 2.69620 2.92620 2.94300 3.01089 3.05827 3.17903 3.23655 3.68786 3.72541 3.81371 4.01199 4.35671 4.45358 4.55553 4.77695 4.92465 5.14276 5.17073 5.43835 5.78002 5.95728 6.08849 6.12160 6.19944 6.49541 6.63451 6.67728 6.72638 6.93239 7.04522 7.23405 7.26302 7.64005 7.79535 7.83038 7.95469 8.28042 8.32363 8.57173 8.76129 9.83306 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.003175 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.320325 B = 8817.211843 C =10461.831011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.434 5.434 3 C 0.237 3.763 4 N -0.443 5.443 5 C 0.134 3.866 6 N -0.003 5.003 7 O -0.070 6.070 8 O -0.185 6.185 9 C 0.166 3.834 10 C 0.199 3.801 11 N -0.387 5.387 12 O 0.092 5.908 13 C 0.281 3.719 14 C -0.033 4.033 15 C -0.192 4.192 16 C -0.091 4.091 17 C -0.208 4.208 18 C 0.101 3.899 19 C -0.466 4.466 20 H 0.085 0.915 21 C 0.075 3.925 22 N -0.763 5.763 23 Si 0.917 3.083 24 H -0.261 1.261 25 H -0.277 1.277 26 H -0.259 1.259 27 C -0.128 4.128 28 N -0.430 5.430 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.240 0.760 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.290 0.710 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.624 13.954 -1.507 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.116 5.116 3 C -0.048 4.048 4 N -0.163 5.163 5 C -0.083 4.083 6 N 0.479 4.521 7 O -0.273 6.273 8 O -0.368 6.368 9 C 0.041 3.959 10 C -0.071 4.071 11 N -0.096 5.096 12 O 0.029 5.971 13 C 0.068 3.932 14 C -0.035 4.035 15 C -0.213 4.213 16 C -0.109 4.109 17 C -0.228 4.228 18 C 0.099 3.901 19 C -0.493 4.493 20 H 0.103 0.897 21 C -0.150 4.150 22 N -0.385 5.385 23 Si 0.740 3.260 24 H -0.185 1.185 25 H -0.202 1.202 26 H -0.184 1.184 27 C -0.150 4.150 28 N -0.163 5.163 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.256 0.744 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.012 15.860 -1.343 16.687 hybrid contribution -1.135 -1.073 0.036 1.562 sum -6.147 14.787 -1.307 16.067 Atomic orbital electron populations 1.22555 0.72981 1.06667 1.05657 1.45545 1.09495 1.04855 1.51718 1.25335 0.82859 0.94144 1.02426 1.69702 1.20505 1.07820 1.18269 1.19443 0.82615 0.89293 1.16928 1.49271 1.01467 1.03176 0.98175 1.96544 1.94771 0.85617 1.50363 1.96274 1.08127 1.75712 1.56671 1.16960 0.88402 0.84494 1.06015 1.22205 0.86793 0.92305 1.05753 1.74834 1.20229 0.92714 1.21815 1.85366 1.32533 1.13786 1.65437 1.27413 0.77289 0.97557 0.90972 1.17198 0.95059 0.81473 1.09819 1.20472 0.92734 0.96086 1.12025 1.20471 0.97729 0.92450 1.00285 1.21234 0.93054 0.97357 1.11152 1.17402 0.91649 0.91750 0.89329 1.20646 0.93414 0.98567 1.36656 0.89664 1.27451 1.00409 0.95305 0.91838 1.69081 1.24417 1.24696 1.20282 0.86227 0.78578 0.80838 0.80325 1.18546 1.20150 1.18364 1.21615 0.98054 0.91859 1.03456 1.73082 1.27271 0.94916 1.21075 0.88709 0.87532 0.87633 0.74356 0.86835 0.88200 0.88365 0.89730 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.81 59.84 0.65 1.00 16 2 N -0.43 -4.22 3.17 -121.80 -0.39 -4.61 16 3 C 0.24 1.98 12.54 -90.39 -1.13 0.84 16 4 N -0.44 -6.09 11.21 -11.47 -0.13 -6.22 16 5 C 0.13 2.23 8.14 -145.42 -1.18 1.04 16 6 N 0.00 -0.05 4.98 32.80 0.16 0.11 16 7 O -0.07 -1.44 15.75 -31.57 -0.50 -1.94 16 8 O -0.19 -3.69 19.97 -31.57 -0.63 -4.32 16 9 C 0.17 2.49 6.92 -82.04 -0.57 1.93 16 10 C 0.20 3.51 7.86 -156.22 -1.23 2.28 16 11 N -0.39 -6.58 10.41 31.21 0.32 -6.25 16 12 O 0.09 1.77 11.09 16.65 0.18 1.95 16 13 C 0.28 5.78 7.99 -13.79 -0.11 5.67 16 14 C -0.03 -0.73 5.87 -105.05 -0.62 -1.34 16 15 C -0.19 -4.17 9.71 -38.79 -0.38 -4.55 16 16 C -0.09 -1.91 10.00 -39.73 -0.40 -2.31 16 17 C -0.21 -4.65 9.80 -38.66 -0.38 -5.03 16 18 C 0.10 2.45 5.61 -106.84 -0.60 1.85 16 19 C -0.47 -11.15 9.31 -35.43 -0.33 -11.48 16 20 H 0.09 1.95 7.98 -52.49 -0.42 1.53 16 21 C 0.08 1.68 5.35 -15.19 -0.08 1.60 16 22 N -0.76 -17.57 10.95 55.98 0.61 -16.95 16 23 Si 0.92 16.70 29.67 -169.99 -5.04 11.66 16 24 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 25 H -0.28 -4.90 7.11 56.52 0.40 -4.50 16 26 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 27 C -0.13 -3.04 8.44 -38.30 -0.32 -3.36 16 28 N -0.43 -8.63 7.32 -10.23 -0.07 -8.71 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.11 0.84 6.64 -51.93 -0.34 0.50 16 31 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.24 0.50 8.06 -52.48 -0.42 0.08 16 33 H 0.11 2.40 7.86 -52.49 -0.41 1.99 16 34 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 36 H 0.29 6.02 8.27 -40.82 -0.34 5.69 16 37 H 0.13 3.11 5.96 -52.49 -0.31 2.80 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -30.00 341.38 -9.74 -39.75 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -2.74 Total: 2.23 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -6.68 Total: -11.85 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.51 Total: -42.62 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: -0.94 Total: -4.31 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.04 Total: 11.66 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.00 -9.74 -39.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350902165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.800 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 217.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 208.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds