Wall clock time and date at job start Sat Apr 11 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47133 * 2 1 4 4 C 1.50705 * 109.47011 * 240.00280 * 2 1 3 5 5 H 1.07998 * 119.99782 * 244.40778 * 4 2 1 6 6 C 1.37868 * 119.99924 * 64.41324 * 4 2 1 7 7 N 1.31517 * 120.00594 * 8.60367 * 6 4 2 8 8 Si 1.86802 * 119.99895 * 188.60214 * 6 4 2 9 9 H 1.48493 * 109.47408 * 89.99891 * 8 6 4 10 10 H 1.48503 * 109.47041 * 209.99979 * 8 6 4 11 11 H 1.48503 * 109.47062 * 329.99614 * 8 6 4 12 12 N 1.46499 * 109.47191 * 120.00201 * 2 1 3 13 13 S 1.65601 * 120.00104 * 264.34620 * 12 2 1 14 14 O 1.42104 * 106.40055 * 47.99296 * 13 12 2 15 15 O 1.42094 * 106.40421 * 180.91330 * 13 12 2 16 16 N 1.65599 * 107.21707 * 294.45496 * 13 12 2 17 17 C 1.46968 * 120.59155 * 275.09309 * 16 13 12 18 18 C 1.53815 * 108.39321 * 124.75994 * 17 16 13 19 19 N 1.46958 * 108.58421 * 49.63922 * 18 17 16 20 20 S 1.65597 * 120.59570 * 124.61982 * 19 18 17 21 21 C 1.81392 * 104.45172 * 270.02446 * 20 19 18 22 22 O 1.42103 * 104.27668 * 26.09891 * 20 19 18 23 23 O 1.42102 * 104.27536 * 153.95316 * 20 19 18 24 24 C 1.46967 * 118.80980 * 304.64834 * 19 18 17 25 25 C 1.46965 * 120.59469 * 95.37468 * 16 13 12 26 26 H 1.09002 * 109.47300 * 174.78695 * 1 2 3 27 27 H 1.09005 * 109.47548 * 294.78770 * 1 2 3 28 28 H 1.08999 * 109.47122 * 54.78473 * 1 2 3 29 29 H 0.97002 * 119.99692 * 1.00583 * 7 6 4 30 30 H 0.96997 * 119.99604 * 84.33925 * 12 2 1 31 31 H 1.08993 * 109.60798 * 244.53748 * 17 16 13 32 32 H 1.08993 * 109.60800 * 5.05638 * 17 16 13 33 33 H 1.09002 * 109.74478 * 289.84480 * 18 17 16 34 34 H 1.09004 * 109.52848 * 169.30803 * 18 17 16 35 35 H 1.08996 * 109.47506 * 59.99844 * 21 20 19 36 36 H 1.08999 * 109.47414 * 180.02562 * 21 20 19 37 37 H 1.09002 * 109.47374 * 299.99930 * 21 20 19 38 38 H 1.09000 * 109.60823 * 295.47725 * 24 19 18 39 39 H 1.09000 * 109.61098 * 174.97350 * 24 19 18 40 40 H 1.08995 * 109.61336 * 354.94648 * 25 16 13 41 41 H 1.09000 * 109.60717 * 115.45990 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5932 -1.6281 -1.1331 6 6 1.7759 -0.1886 -2.4806 7 7 1.2441 1.0086 -2.5972 8 14 2.1838 -1.1821 -4.0090 9 1 1.0118 -2.0115 -4.3878 10 1 2.5188 -0.2601 -5.1240 11 1 3.3454 -2.0645 -3.7305 12 7 2.0183 -0.6906 1.1961 13 16 2.4275 0.1785 2.5450 14 8 1.3553 1.0805 2.7817 15 8 2.8773 -0.7641 3.5086 16 7 3.7410 1.1066 2.1503 17 6 5.1000 0.5536 2.2344 18 6 5.7804 0.7277 0.8659 19 7 5.6083 2.1209 0.4312 20 16 6.9219 3.0493 0.0376 21 6 7.4027 3.8382 1.5986 22 8 7.9062 2.1089 -0.3699 23 8 6.4094 4.0139 -0.8714 24 6 4.2496 2.6756 0.3526 25 6 3.5688 2.4999 1.7156 26 1 -0.3634 -1.0234 -0.0934 27 1 -0.3634 0.4309 0.9330 28 1 -0.3633 0.5926 -0.8396 29 1 1.0458 1.5305 -1.8040 30 1 2.1018 -1.6570 1.1980 31 1 5.6657 1.0878 2.9977 32 1 5.0490 -0.5054 2.4873 33 1 5.3212 0.0581 0.1386 34 1 6.8428 0.5009 0.9557 35 1 7.6517 3.0711 2.3318 36 1 8.2703 4.4763 1.4311 37 1 6.5749 4.4416 1.9710 38 1 3.6814 2.1448 -0.4113 39 1 4.3011 3.7355 0.1032 40 1 2.5065 2.7265 1.6258 41 1 4.0281 3.1694 2.4429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408435030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:19 Heat of formation + Delta-G solvation = -167.199038 kcal Electronic energy + Delta-G solvation = -28276.636384 eV Core-core repulsion = 24251.695459 eV Total energy + Delta-G solvation = -4024.940925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.51630 -38.44351 -38.22764 -37.49811 -37.00577 -36.95238 -34.73106 -34.12703 -32.37484 -30.26470 -30.04799 -27.39198 -26.93274 -25.02853 -23.03970 -22.56039 -20.72063 -19.73788 -19.47501 -19.15498 -18.44469 -17.78672 -17.37092 -17.34206 -16.96090 -16.17321 -15.69968 -15.63920 -15.44179 -15.37581 -15.20902 -14.90625 -14.26355 -14.08359 -13.94152 -13.90020 -13.73395 -13.70810 -13.32937 -13.23190 -13.17807 -12.98829 -12.95147 -12.86085 -12.68416 -12.54693 -12.52313 -12.30261 -12.22386 -12.05565 -11.95668 -11.68230 -10.99878 -10.69571 -10.40724 -10.12173 -9.60860 -8.54213 -6.28212 -0.70780 -0.35641 1.56708 1.58922 1.62298 1.78676 1.93731 2.56992 2.59646 3.00009 3.13953 3.22593 3.33957 3.49708 3.92242 3.95943 4.15291 4.15669 4.24511 4.28944 4.31248 4.40545 4.59013 4.60001 4.67656 4.71824 4.85199 4.92555 4.96824 5.03056 5.16703 5.27500 5.43984 5.48547 5.51800 5.57797 5.93118 6.23254 6.42075 6.65547 7.46678 8.83035 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.006115 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.736164 B = 4577.676012 C = 6424.213046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.272 3.728 3 H 0.027 0.973 4 C -0.605 4.605 5 H 0.056 0.944 6 C -0.015 4.015 7 N -0.928 5.928 8 Si 1.104 2.896 9 H -0.277 1.277 10 H -0.292 1.292 11 H -0.274 1.274 12 N -1.109 6.109 13 S 2.798 3.202 14 O -1.008 7.008 15 O -1.006 7.006 16 N -1.000 6.000 17 C 0.107 3.893 18 C 0.103 3.897 19 N -0.995 5.995 20 S 2.602 3.398 21 C -0.641 4.641 22 O -0.993 6.993 23 O -0.999 6.999 24 C 0.106 3.894 25 C 0.105 3.895 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.264 0.736 30 H 0.413 0.587 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.049 0.951 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.144 4.553 12.014 17.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.165 3.835 3 H 0.044 0.956 4 C -0.644 4.644 5 H 0.074 0.926 6 C -0.216 4.216 7 N -0.564 5.564 8 Si 0.928 3.072 9 H -0.202 1.202 10 H -0.218 1.218 11 H -0.200 1.200 12 N -0.869 5.869 13 S 2.807 3.193 14 O -0.992 6.992 15 O -0.990 6.990 16 N -0.841 5.841 17 C -0.020 4.020 18 C -0.024 4.024 19 N -0.832 5.832 20 S 2.701 3.299 21 C -0.796 4.796 22 O -0.984 6.984 23 O -0.990 6.990 24 C -0.022 4.022 25 C -0.022 4.022 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.246 0.754 31 H 0.132 0.868 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.173 0.827 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.067 0.933 39 H 0.132 0.868 40 H 0.107 0.893 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.997 4.817 10.337 16.553 hybrid contribution -0.307 -0.416 1.404 1.497 sum 11.690 4.401 11.741 17.143 Atomic orbital electron populations 1.22241 0.99196 1.00610 0.99462 1.18274 0.90287 0.91894 0.83016 0.95580 1.22299 1.38463 1.11429 0.92233 0.92607 1.26761 0.94088 0.96910 1.03885 1.70895 1.41805 1.10361 1.33376 0.83067 0.76929 0.74368 0.72788 1.20243 1.21842 1.19956 1.55691 1.81470 1.19114 1.30667 1.01252 0.72962 0.72386 0.72709 1.93543 1.54191 1.66174 1.85280 1.93540 1.82538 1.63291 1.59629 1.57840 1.20349 1.22726 1.83196 1.22137 0.81460 1.00722 0.97631 1.21976 1.02846 0.81643 0.95971 1.57406 1.19141 1.22364 1.84249 1.04953 0.72643 0.73781 0.78529 1.30317 1.13948 1.15194 1.20108 1.93548 1.60682 1.61929 1.82245 1.93563 1.79024 1.63713 1.62663 1.21774 0.82531 1.00343 0.97517 1.22002 1.02198 0.81843 0.96147 0.93648 0.94171 0.93627 0.92492 0.75401 0.86762 0.88240 0.92395 0.85969 0.82658 0.83502 0.83085 0.93275 0.86814 0.89300 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.06 9.18 71.98 0.66 -6.40 16 2 C 0.27 12.20 2.41 44.25 0.11 12.30 16 3 H 0.03 1.23 6.02 -2.39 -0.01 1.21 16 4 C -0.60 -30.20 8.70 25.60 0.22 -29.98 16 5 H 0.06 2.75 7.83 -2.91 -0.02 2.73 16 6 C -0.02 -0.80 5.24 84.65 0.44 -0.36 16 7 N -0.93 -51.93 13.01 21.44 0.28 -51.66 16 8 Si 1.10 48.25 29.91 68.60 2.05 50.30 16 9 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 N -1.11 -41.55 5.52 -172.52 -0.95 -42.50 16 13 S 2.80 94.29 6.05 -56.49 -0.34 93.95 16 14 O -1.01 -39.28 15.95 -128.00 -2.04 -41.32 16 15 O -1.01 -35.56 17.00 -128.00 -2.18 -37.74 16 16 N -1.00 -26.49 3.32 -511.45 -1.70 -28.19 16 17 C 0.11 2.15 6.56 86.56 0.57 2.72 16 18 C 0.10 2.33 6.50 86.57 0.56 2.90 16 19 N -1.00 -23.73 3.20 -511.43 -1.63 -25.36 16 20 S 2.60 56.21 6.06 -56.49 -0.34 55.87 16 21 C -0.64 -5.21 10.99 113.37 1.25 -3.97 16 22 O -0.99 -27.89 16.70 -127.65 -2.13 -30.02 16 23 O -1.00 -30.30 16.70 -127.65 -2.13 -32.43 16 24 C 0.11 2.87 6.49 86.41 0.56 3.43 16 25 C 0.10 2.51 6.19 86.41 0.54 3.04 16 26 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.04 1.72 7.66 -2.38 -0.02 1.70 16 28 H 0.04 2.22 6.38 -2.39 -0.02 2.20 16 29 H 0.26 14.70 5.99 -92.71 -0.56 14.14 16 30 H 0.41 14.38 8.83 -96.75 -0.85 13.53 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 1.99 7.24 -2.39 -0.02 1.97 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.12 2.14 7.06 -2.38 -0.02 2.12 16 35 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.15 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.05 1.80 7.19 -2.39 -0.02 1.78 16 39 H 0.11 2.68 7.06 -2.39 -0.02 2.66 16 40 H 0.09 2.43 6.95 -2.39 -0.02 2.41 16 41 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -78.17 352.19 -5.79 -83.96 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.42 Total: 21.45 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 4.91 Total: -16.31 kcal Atomic # 7 Polarization: -143.70 SS G_CDS: -4.00 Total: -147.71 kcal Atomic # 8 Polarization: -133.03 SS G_CDS: -8.48 Total: -141.52 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.05 Total: 50.30 kcal Atomic # 16 Polarization: 150.51 SS G_CDS: -0.68 Total: 149.82 kcal Total: -78.17 -5.79 -83.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408435030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.239 kcal (2) G-P(sol) polarization free energy of solvation -78.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds