Wall clock time and date at job start Sat Apr 11 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46910 * 2 1 4 4 C 1.52997 * 109.47091 * 239.99862 * 2 1 3 5 5 C 1.53001 * 109.46792 * 175.00106 * 4 2 1 6 6 S 1.81408 * 109.46924 * 179.97438 * 5 4 2 7 7 C 1.81404 * 103.00008 * 179.97438 * 6 5 4 8 8 O 1.42092 * 109.46849 * 296.38818 * 6 5 4 9 9 N 1.46498 * 109.46903 * 119.99564 * 2 1 3 10 10 C 1.34774 * 120.00348 * 275.00387 * 9 2 1 11 11 O 1.21549 * 119.99904 * 359.97438 * 10 9 2 12 12 C 1.47867 * 120.00079 * 180.02562 * 10 9 2 13 13 C 1.39669 * 120.09925 * 0.02562 * 12 10 9 14 14 C 1.38043 * 120.03800 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.24168 * 359.75416 * 14 13 12 16 16 C 1.39179 * 120.20357 * 0.50266 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.76778 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46950 * 90.00202 * 22 20 18 24 24 H 1.48495 * 109.46650 * 209.99961 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99842 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.49916 * 16 15 14 27 27 H 1.08995 * 109.47414 * 300.00093 * 1 2 3 28 28 H 1.09005 * 109.46881 * 60.00314 * 1 2 3 29 29 H 1.08997 * 109.46910 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47257 * 294.99658 * 4 2 1 31 31 H 1.09006 * 109.47271 * 55.00057 * 4 2 1 32 32 H 1.09003 * 109.47324 * 299.99709 * 5 4 2 33 33 H 1.09001 * 109.47296 * 60.00404 * 5 4 2 34 34 H 1.09007 * 109.46842 * 60.00255 * 7 6 5 35 35 H 1.08990 * 109.47127 * 179.97438 * 7 6 5 36 36 H 1.08993 * 109.47246 * 300.00814 * 7 6 5 37 37 H 0.97008 * 119.99747 * 95.00187 * 9 2 1 38 38 H 1.08002 * 119.98588 * 359.96545 * 13 12 10 39 39 H 1.08000 * 119.87868 * 180.02562 * 14 13 12 40 40 H 1.08005 * 119.89464 * 180.25271 * 15 14 13 41 41 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 42 42 H 1.07995 * 120.12339 * 180.23002 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 16 4.1696 -1.4691 -2.7943 7 6 5.9657 -1.2339 -2.6967 8 8 3.8669 -2.8541 -2.6977 9 7 2.0183 -0.6905 1.1962 10 6 2.1469 -0.0182 2.3572 11 8 1.8583 1.1613 2.4116 12 6 2.6403 -0.7151 3.5644 13 6 2.9741 -2.0699 3.5038 14 6 3.4351 -2.7191 4.6314 15 6 3.5733 -2.0322 5.8224 16 6 3.2385 -0.6832 5.8955 17 16 3.4107 0.1865 7.4181 18 6 1.7717 0.0320 8.0458 19 1 1.0453 -0.5678 7.5176 20 6 1.4141 0.6809 9.2188 21 7 2.2993 1.4115 9.8629 22 14 -0.3235 0.5165 9.8847 23 1 -0.3941 -0.6499 10.8011 24 1 -0.6886 1.7507 10.6253 25 1 -1.2691 0.3180 8.7570 26 6 2.7739 -0.0218 4.7662 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.7517 -1.7715 -1.2055 31 1 1.6054 -0.2618 -2.1370 32 1 3.8532 0.4370 -1.3573 33 1 3.9995 -1.0728 -0.4259 34 1 6.3405 -1.6772 -1.7741 35 1 6.4421 -1.7154 -3.5505 36 1 6.1936 -0.1681 -2.7062 37 1 2.2490 -1.6318 1.1527 38 1 2.8715 -2.6101 2.5742 39 1 3.6929 -3.7667 4.5816 40 1 3.9383 -2.5447 6.7002 41 1 2.0492 1.8654 10.6829 42 1 2.5169 1.0258 4.8189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431716485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:23 Heat of formation + Delta-G solvation = -61.522486 kcal Electronic energy + Delta-G solvation = -24020.011138 eV Core-core repulsion = 20410.501955 eV Total energy + Delta-G solvation = -3609.509183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.12297 -38.08539 -36.50682 -36.05019 -32.81763 -32.51666 -31.02150 -30.56328 -29.72831 -29.29238 -25.57956 -24.65681 -23.63232 -22.36195 -21.15855 -20.42974 -18.34877 -17.87424 -17.37483 -16.64013 -15.91890 -15.56136 -15.40423 -15.19815 -15.00943 -14.85830 -14.71172 -14.39010 -13.93684 -13.82051 -13.59574 -13.41629 -13.25412 -12.96533 -12.95071 -12.47088 -12.26512 -12.22676 -11.90923 -11.71766 -11.65216 -11.20685 -11.16693 -11.13730 -11.08739 -10.71570 -10.44827 -9.98151 -9.77289 -9.20749 -9.17037 -9.02707 -8.66847 -8.60705 -8.04657 -6.72622 -6.29529 -4.03575 1.09758 1.14521 1.64623 2.18823 3.02571 3.07933 3.19782 3.22657 3.27748 3.37235 3.46096 4.07371 4.24742 4.35463 4.48029 4.53560 4.69567 4.80580 4.86032 5.05319 5.07107 5.10532 5.18652 5.22023 5.22780 5.36509 5.46310 5.48871 5.49925 5.62327 5.69747 5.82321 5.85688 5.98385 6.05264 6.23662 6.41086 6.56835 6.62034 6.91190 7.17202 7.47626 7.56738 8.28010 8.31863 9.16339 10.77235 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.002287 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.842314 B =12239.374494 C =12940.084332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.147 3.853 3 H 0.093 0.907 4 C -0.107 4.107 5 C -0.450 4.450 6 S 1.240 4.760 7 C -0.490 4.490 8 O -0.853 6.853 9 N -0.728 5.728 10 C 0.565 3.435 11 O -0.534 6.534 12 C -0.156 4.156 13 C -0.091 4.091 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.106 4.106 17 S -0.035 6.035 18 C -0.519 4.519 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.019 4.019 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.397 0.603 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.270 0.730 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.806 -4.303 -27.506 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.146 4.146 5 C -0.587 4.587 6 S 1.438 4.562 7 C -0.647 4.647 8 O -0.849 6.849 9 N -0.382 5.382 10 C 0.353 3.647 11 O -0.411 6.411 12 C -0.161 4.161 13 C -0.111 4.111 14 C -0.161 4.161 15 C -0.076 4.076 16 C -0.217 4.217 17 S 0.200 5.800 18 C -0.667 4.667 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.202 1.202 24 H -0.206 1.206 25 H -0.196 1.196 26 C -0.040 4.040 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.139 0.861 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.232 0.768 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.150 0.850 41 H 0.080 0.920 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.056 -3.268 -27.496 27.857 hybrid contribution -1.009 -2.076 1.807 2.932 sum 2.048 -5.345 -25.688 26.318 Atomic orbital electron populations 1.22208 0.95022 1.02298 1.02937 1.20942 0.94048 0.97623 0.83296 0.88912 1.21508 0.92315 1.02040 0.98721 1.27718 1.03010 1.11254 1.16686 1.70404 0.87738 0.94554 1.03456 1.27630 1.21287 1.08499 1.07315 1.93141 1.78663 1.30735 1.82328 1.46026 1.68513 1.13975 1.09645 1.18395 0.76923 0.86424 0.82917 1.90763 1.49850 1.15592 1.84873 1.19888 1.07223 0.94625 0.94317 1.21136 0.98427 0.93297 0.98200 1.21061 1.02124 0.99827 0.93061 1.21962 0.94845 0.93464 0.97371 1.22857 1.00659 0.96936 1.01243 1.83595 1.17863 1.69081 1.09501 1.22831 0.96168 1.35977 1.11701 0.90637 1.25006 0.98589 0.94153 0.95836 1.69984 1.34142 1.29527 1.16890 0.86116 0.82368 0.77879 0.78943 1.20157 1.20614 1.19568 1.21948 0.91893 1.00352 0.89833 0.91607 0.91436 0.92469 0.90824 0.88990 0.86132 0.89337 0.90045 0.87653 0.86857 0.76781 0.86725 0.85904 0.85050 0.92044 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.15 1.37 2.57 -67.93 -0.17 1.19 16 3 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 4 C -0.11 -0.67 4.76 -26.73 -0.13 -0.79 16 5 C -0.45 -2.55 5.81 37.16 0.22 -2.33 16 6 S 1.24 5.92 13.80 -107.50 -1.48 4.44 16 7 C -0.49 -2.22 10.74 101.05 1.09 -1.14 16 8 O -0.85 -10.23 18.14 -35.23 -0.64 -10.87 16 9 N -0.73 -8.43 4.48 -54.75 -0.25 -8.68 16 10 C 0.56 9.08 7.74 -12.32 -0.10 8.99 16 11 O -0.53 -10.35 16.00 5.32 0.09 -10.27 16 12 C -0.16 -2.68 5.87 -105.00 -0.62 -3.29 16 13 C -0.09 -1.32 9.54 -39.12 -0.37 -1.69 16 14 C -0.14 -2.11 10.02 -39.68 -0.40 -2.51 16 15 C -0.06 -1.01 9.79 -39.25 -0.38 -1.40 16 16 C -0.11 -2.31 5.45 -39.00 -0.21 -2.52 16 17 S -0.03 -0.91 21.40 -107.50 -2.30 -3.21 16 18 C -0.52 -14.78 9.46 30.92 0.29 -14.49 16 19 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 20 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 21 N -0.87 -25.58 13.22 55.49 0.73 -24.84 16 22 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.02 -0.38 9.34 -38.92 -0.36 -0.75 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.12 0.46 8.14 -51.92 -0.42 0.03 16 33 H 0.09 0.69 7.75 -51.92 -0.40 0.29 16 34 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.40 3.90 6.63 -40.82 -0.27 3.63 16 38 H 0.11 1.24 6.40 -52.49 -0.34 0.91 16 39 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.13 2.29 8.06 -52.48 -0.42 1.86 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.14 3.09 7.65 -52.49 -0.40 2.69 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -38.69 385.50 -9.96 -48.65 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.00 Total: 2.31 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -0.89 Total: -19.93 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.49 Total: -33.52 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.55 Total: -21.14 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -3.78 Total: 1.23 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.69 -9.96 -48.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431716485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.877 kcal (2) G-P(sol) polarization free energy of solvation -38.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds