Wall clock time and date at job start Sat Apr 11 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46910 * 2 1 4 4 C 1.52997 * 109.47091 * 239.99862 * 2 1 3 5 5 C 1.53001 * 109.46792 * 175.00106 * 4 2 1 6 6 S 1.81408 * 109.46924 * 179.97438 * 5 4 2 7 7 C 1.81404 * 103.00008 * 179.97438 * 6 5 4 8 8 O 1.42092 * 109.46849 * 296.38818 * 6 5 4 9 9 N 1.46498 * 109.46903 * 119.99564 * 2 1 3 10 10 C 1.34774 * 120.00348 * 275.00387 * 9 2 1 11 11 O 1.21549 * 119.99904 * 359.97438 * 10 9 2 12 12 C 1.47867 * 120.00079 * 180.02562 * 10 9 2 13 13 C 1.39669 * 120.09925 * 0.02562 * 12 10 9 14 14 C 1.38043 * 120.03800 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.24168 * 359.75416 * 14 13 12 16 16 C 1.39179 * 120.20357 * 0.50266 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.76778 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46950 * 90.00202 * 22 20 18 24 24 H 1.48495 * 109.46650 * 209.99961 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99842 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.49916 * 16 15 14 27 27 H 1.08995 * 109.47414 * 300.00093 * 1 2 3 28 28 H 1.09005 * 109.46881 * 60.00314 * 1 2 3 29 29 H 1.08997 * 109.46910 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47257 * 294.99658 * 4 2 1 31 31 H 1.09006 * 109.47271 * 55.00057 * 4 2 1 32 32 H 1.09003 * 109.47324 * 299.99709 * 5 4 2 33 33 H 1.09001 * 109.47296 * 60.00404 * 5 4 2 34 34 H 1.09007 * 109.46842 * 60.00255 * 7 6 5 35 35 H 1.08990 * 109.47127 * 179.97438 * 7 6 5 36 36 H 1.08993 * 109.47246 * 300.00814 * 7 6 5 37 37 H 0.97008 * 119.99747 * 95.00187 * 9 2 1 38 38 H 1.08002 * 119.98588 * 359.96545 * 13 12 10 39 39 H 1.08000 * 119.87868 * 180.02562 * 14 13 12 40 40 H 1.08005 * 119.89464 * 180.25271 * 15 14 13 41 41 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 42 42 H 1.07995 * 120.12339 * 180.23002 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 16 4.1696 -1.4691 -2.7943 7 6 5.9657 -1.2339 -2.6967 8 8 3.8669 -2.8541 -2.6977 9 7 2.0183 -0.6905 1.1962 10 6 2.1469 -0.0182 2.3572 11 8 1.8583 1.1613 2.4116 12 6 2.6403 -0.7151 3.5644 13 6 2.9741 -2.0699 3.5038 14 6 3.4351 -2.7191 4.6314 15 6 3.5733 -2.0322 5.8224 16 6 3.2385 -0.6832 5.8955 17 16 3.4107 0.1865 7.4181 18 6 1.7717 0.0320 8.0458 19 1 1.0453 -0.5678 7.5176 20 6 1.4141 0.6809 9.2188 21 7 2.2993 1.4115 9.8629 22 14 -0.3235 0.5165 9.8847 23 1 -0.3941 -0.6499 10.8011 24 1 -0.6886 1.7507 10.6253 25 1 -1.2691 0.3180 8.7570 26 6 2.7739 -0.0218 4.7662 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.7517 -1.7715 -1.2055 31 1 1.6054 -0.2618 -2.1370 32 1 3.8532 0.4370 -1.3573 33 1 3.9995 -1.0728 -0.4259 34 1 6.3405 -1.6772 -1.7741 35 1 6.4421 -1.7154 -3.5505 36 1 6.1936 -0.1681 -2.7062 37 1 2.2490 -1.6318 1.1527 38 1 2.8715 -2.6101 2.5742 39 1 3.6929 -3.7667 4.5816 40 1 3.9383 -2.5447 6.7002 41 1 2.0492 1.8654 10.6829 42 1 2.5169 1.0258 4.8189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431716485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:23 Heat of formation + Delta-G solvation = -89.475389 kcal Electronic energy + Delta-G solvation = -24021.223267 eV Core-core repulsion = 20410.501955 eV Total energy + Delta-G solvation = -3610.721312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35931 -39.38403 -37.48763 -36.75001 -34.68521 -33.83822 -32.14046 -31.90689 -30.61971 -29.69433 -27.77615 -25.59558 -24.59905 -23.74212 -22.08664 -21.59870 -20.04872 -19.02158 -18.34097 -17.65871 -17.06662 -16.96348 -16.68803 -16.27650 -16.09207 -15.93534 -15.71684 -15.47515 -15.23679 -14.80177 -14.66351 -14.63676 -14.15146 -14.02157 -13.70636 -13.51937 -13.31484 -13.16689 -13.05505 -12.99070 -12.77633 -12.71064 -12.56953 -12.44417 -12.23973 -11.86895 -11.77498 -11.28119 -11.15267 -11.03504 -10.80164 -10.28353 -9.95895 -9.76126 -9.15644 -8.84309 -8.42362 -6.22708 -0.24731 0.18459 0.68850 1.26759 1.35091 1.43314 1.60678 1.75489 1.80103 2.07044 2.21589 2.74189 2.90701 2.91560 3.37806 3.59040 3.80892 3.85156 3.89986 3.96205 4.04060 4.29107 4.29437 4.41006 4.41205 4.49784 4.52071 4.59705 4.72763 4.80065 4.85057 4.88307 5.04802 5.14848 5.16844 5.19841 5.24979 5.31737 5.35085 5.43694 5.48623 5.78669 6.12645 6.41366 6.97977 7.10370 8.64883 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.002287 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.842314 B =12239.374494 C =12940.084332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.082 0.918 4 C -0.103 4.103 5 C -0.455 4.455 6 S 1.305 4.695 7 C -0.493 4.493 8 O -0.925 6.925 9 N -0.707 5.707 10 C 0.563 3.437 11 O -0.576 6.576 12 C -0.158 4.158 13 C -0.069 4.069 14 C -0.122 4.122 15 C -0.063 4.063 16 C -0.127 4.127 17 S -0.092 6.092 18 C -0.537 4.537 19 H 0.066 0.934 20 C 0.020 3.980 21 N -0.905 5.905 22 Si 0.992 3.008 23 H -0.262 1.262 24 H -0.270 1.270 25 H -0.270 1.270 26 C -0.043 4.043 27 H 0.030 0.970 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.111 0.889 36 H 0.141 0.859 37 H 0.408 0.592 38 H 0.164 0.836 39 H 0.172 0.828 40 H 0.136 0.864 41 H 0.275 0.725 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -6.257 -30.506 31.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.101 0.899 4 C -0.142 4.142 5 C -0.592 4.592 6 S 1.505 4.495 7 C -0.652 4.652 8 O -0.920 6.920 9 N -0.360 5.360 10 C 0.351 3.649 11 O -0.457 6.457 12 C -0.163 4.163 13 C -0.087 4.087 14 C -0.142 4.142 15 C -0.084 4.084 16 C -0.238 4.238 17 S 0.143 5.857 18 C -0.684 4.684 19 H 0.084 0.916 20 C -0.185 4.185 21 N -0.541 5.541 22 Si 0.814 3.186 23 H -0.187 1.187 24 H -0.195 1.195 25 H -0.194 1.194 26 C -0.065 4.065 27 H 0.049 0.951 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.160 0.840 37 H 0.246 0.754 38 H 0.181 0.819 39 H 0.189 0.811 40 H 0.154 0.846 41 H 0.084 0.916 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.472 -5.265 -30.535 31.084 hybrid contribution -0.723 -1.491 2.554 3.045 sum 1.750 -6.756 -27.980 28.837 Atomic orbital electron populations 1.22196 0.94729 1.02691 1.02625 1.21192 0.94310 0.97455 0.83445 0.89945 1.21548 0.92705 1.01620 0.98314 1.27785 1.02727 1.12635 1.16039 1.69654 0.86998 0.91288 1.01561 1.27673 1.20444 1.10442 1.06602 1.93007 1.80582 1.34802 1.83658 1.45955 1.66720 1.14358 1.08945 1.18303 0.76845 0.85939 0.83766 1.90746 1.51940 1.17443 1.85559 1.20036 1.06862 0.95931 0.93462 1.21643 0.95284 0.91801 1.00019 1.21520 0.99738 1.01684 0.91219 1.22066 0.94877 0.92031 0.99394 1.22518 1.04233 0.98314 0.98764 1.83464 1.17776 1.71134 1.13372 1.23045 0.96850 1.36222 1.12286 0.91594 1.26012 1.03093 0.93538 0.95901 1.70102 1.36303 1.30306 1.17425 0.85042 0.76671 0.78583 0.78295 1.18660 1.19524 1.19436 1.21639 0.94038 0.99311 0.91522 0.95104 0.88610 0.91673 0.91288 0.85210 0.83872 0.91257 0.91919 0.87033 0.84016 0.75421 0.81897 0.81072 0.84596 0.91623 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.48 71.98 0.68 -2.02 16 2 C 0.14 2.32 2.57 44.99 0.12 2.44 16 3 H 0.08 1.59 7.58 -2.39 -0.02 1.57 16 4 C -0.10 -0.94 4.76 30.59 0.15 -0.79 16 5 C -0.45 -3.77 5.81 71.98 0.42 -3.35 16 6 S 1.30 9.06 13.80 -56.49 -0.78 8.29 16 7 C -0.49 -3.17 10.74 113.37 1.22 -1.96 16 8 O -0.92 -20.67 18.14 -148.98 -2.70 -23.38 16 9 N -0.71 -15.00 4.48 -445.40 -2.00 -16.99 16 10 C 0.56 17.98 7.74 86.79 0.67 18.65 16 11 O -0.58 -23.21 16.00 -3.87 -0.06 -23.27 16 12 C -0.16 -5.36 5.87 -20.11 -0.12 -5.48 16 13 C -0.07 -1.75 9.54 22.57 0.22 -1.53 16 14 C -0.12 -3.22 10.02 22.21 0.22 -3.00 16 15 C -0.06 -2.26 9.79 22.48 0.22 -2.04 16 16 C -0.13 -5.75 5.45 22.65 0.12 -5.63 16 17 S -0.09 -5.11 21.40 -56.49 -1.21 -6.32 16 18 C -0.54 -31.97 9.46 67.94 0.64 -31.33 16 19 H 0.07 3.90 7.79 -2.91 -0.02 3.88 16 20 C 0.02 1.16 5.49 84.84 0.47 1.62 16 21 N -0.91 -55.03 13.22 21.64 0.29 -54.74 16 22 Si 0.99 45.17 29.55 68.60 2.03 47.20 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 C -0.04 -1.88 9.34 22.70 0.21 -1.67 16 27 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.13 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.89 7.75 -2.39 -0.02 0.87 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 0.64 8.14 -2.40 -0.02 0.62 16 36 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.41 6.64 6.63 -92.70 -0.61 6.02 16 38 H 0.16 2.60 6.40 -2.91 -0.02 2.58 16 39 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 40 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.11 5.17 7.65 -2.91 -0.02 5.15 16 Total: -1.00 -91.59 385.50 1.21 -90.38 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.41 Total: 14.93 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 5.24 Total: -36.09 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -1.71 Total: -71.73 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -2.76 Total: -46.65 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.99 Total: 1.97 kcal Total: -91.59 1.21 -90.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431716485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.901 kcal (2) G-P(sol) polarization free energy of solvation -91.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds