Wall clock time and date at job start Sat Apr 11 2020 06:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46954 * 2 1 4 4 C 1.35913 * 116.99610 * 179.97438 * 3 2 1 5 5 C 1.38787 * 120.01240 * 359.97438 * 4 3 2 6 6 C 1.38189 * 120.09130 * 179.97438 * 5 4 3 7 7 C 1.38246 * 120.11145 * 0.04562 * 6 5 4 8 8 Cl 1.73599 * 119.98916 * 179.97438 * 7 6 5 9 9 C 1.38967 * 120.01836 * 0.02562 * 7 6 5 10 10 N 1.39998 * 120.04412 * 179.97438 * 9 7 6 11 11 C 1.34776 * 120.00189 * 204.50503 * 10 9 7 12 12 O 1.21592 * 119.99549 * 5.62481 * 11 10 9 13 13 N 1.34776 * 120.00262 * 185.63298 * 11 10 9 14 14 C 1.46498 * 120.00127 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47160 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00141 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99946 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99969 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00030 * 0.02562 * 18 17 15 20 20 C 1.38945 * 119.99883 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00397 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99863 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47460 * 60.00127 * 22 20 18 24 24 H 1.48498 * 109.47233 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47297 * 299.99872 * 22 20 18 26 26 C 1.38601 * 120.00865 * 179.72299 * 4 3 2 27 27 H 1.09000 * 109.47473 * 300.00187 * 1 2 3 28 28 H 1.09004 * 109.46761 * 60.00273 * 1 2 3 29 29 H 1.08997 * 109.47427 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47089 * 239.99448 * 2 1 3 31 31 H 1.09004 * 109.46761 * 119.99727 * 2 1 3 32 32 H 1.07997 * 119.95153 * 359.97438 * 5 4 3 33 33 H 1.07999 * 119.94272 * 180.02562 * 6 5 4 34 34 H 0.97005 * 120.00509 * 24.51006 * 10 9 7 35 35 H 0.97002 * 119.99990 * 359.97438 * 13 11 10 36 36 H 1.08998 * 109.46914 * 299.99399 * 14 13 11 37 37 H 1.09002 * 109.47109 * 59.99425 * 14 13 11 38 38 H 0.96994 * 120.00103 * 0.02562 * 17 15 14 39 39 H 0.97000 * 120.00406 * 179.97438 * 21 20 18 40 40 H 1.08000 * 120.05533 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1994 0.4248 0.0016 6 6 5.5696 0.6040 0.0016 7 6 6.1023 1.8797 0.0015 8 17 7.8241 2.1010 0.0022 9 6 5.2598 2.9848 0.0020 10 7 5.7987 4.2770 0.0024 11 6 5.0779 5.3076 0.4869 12 8 4.0029 5.1017 1.0165 13 7 5.5485 6.5663 0.3843 14 6 4.7653 7.6865 0.9115 15 6 5.5085 8.9755 0.6727 16 8 6.5867 8.9600 0.1173 17 7 4.9751 10.1456 1.0764 18 6 5.6515 11.3183 0.8596 19 1 6.6116 11.3045 0.3650 20 6 5.1019 12.5245 1.2762 21 7 3.9341 12.5413 1.8784 22 14 6.0232 14.1223 0.9802 23 1 6.2347 14.3091 -0.4778 24 1 5.2290 15.2579 1.5140 25 1 7.3381 14.0705 1.6685 26 6 3.8837 2.8060 -0.0052 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.7859 -0.5729 0.0024 33 1 6.2254 -0.2541 0.0020 34 1 6.6909 4.4306 -0.3460 35 1 6.4062 6.7305 -0.0379 36 1 3.8001 7.7243 0.4065 37 1 4.6103 7.5496 1.9817 38 1 4.1132 10.1580 1.5209 39 1 3.5506 13.3834 2.1696 40 1 3.2268 3.6632 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455761598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:31 Heat of formation + Delta-G solvation = -104.026867 kcal Electronic energy + Delta-G solvation = -25938.094725 eV Core-core repulsion = 21778.405493 eV Total energy + Delta-G solvation = -4159.689232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.04207 -40.92093 -40.14140 -38.85736 -37.27268 -36.29723 -35.77878 -35.42499 -33.38318 -32.85916 -31.16703 -30.28007 -28.92425 -26.47068 -24.93987 -24.12727 -22.88288 -21.86635 -21.39454 -20.15285 -19.97649 -19.48382 -17.67939 -17.65206 -17.45715 -17.19591 -17.01164 -16.72431 -16.54594 -16.14909 -15.82744 -15.63253 -15.28753 -14.86275 -14.69731 -14.57434 -13.99911 -13.82792 -13.63762 -13.61758 -13.54058 -13.29564 -13.07945 -12.90785 -12.47172 -12.43310 -12.19274 -12.13788 -11.95738 -11.87666 -11.56633 -11.33848 -11.19761 -10.57751 -10.34260 -10.09902 -9.49160 -9.02717 -8.51120 -6.01446 0.06939 0.20994 1.07072 1.28406 1.37920 1.43456 1.54241 1.82685 1.91953 2.18564 2.28672 2.61029 2.91340 3.16026 3.16566 3.68097 3.95462 4.01806 4.10386 4.15280 4.18922 4.30002 4.39684 4.41452 4.42594 4.54731 4.83547 4.86360 4.97040 5.05380 5.09613 5.16619 5.24493 5.32813 5.38099 5.60689 5.70685 5.91284 6.40756 6.47174 6.72096 7.02936 7.22756 7.43610 7.93435 8.65442 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.002145 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.584378 B =13048.831640 C =14755.814746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.043 3.957 3 O -0.333 6.333 4 C 0.153 3.847 5 C -0.212 4.212 6 C -0.037 4.037 7 C -0.118 4.118 8 Cl -0.061 7.061 9 C 0.211 3.789 10 N -0.670 5.670 11 C 0.707 3.293 12 O -0.598 6.598 13 N -0.714 5.714 14 C 0.140 3.860 15 C 0.433 3.567 16 O -0.624 6.624 17 N -0.558 5.558 18 C -0.337 4.337 19 H 0.087 0.913 20 C -0.011 4.011 21 N -0.915 5.915 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.186 4.186 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.421 0.579 35 H 0.413 0.587 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 -28.611 -3.921 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.032 4.032 3 O -0.247 6.247 4 C 0.106 3.894 5 C -0.231 4.231 6 C -0.056 4.056 7 C -0.147 4.147 8 Cl -0.032 7.032 9 C 0.113 3.887 10 N -0.317 5.317 11 C 0.408 3.592 12 O -0.477 6.477 13 N -0.371 5.371 14 C 0.012 3.988 15 C 0.220 3.780 16 O -0.512 6.512 17 N -0.193 5.193 18 C -0.467 4.467 19 H 0.105 0.895 20 C -0.212 4.212 21 N -0.555 5.555 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.207 4.207 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.187 0.813 33 H 0.189 0.811 34 H 0.260 0.740 35 H 0.251 0.749 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.234 0.766 39 H 0.090 0.910 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.051 -28.328 -3.729 28.646 hybrid contribution 0.841 1.296 -0.114 1.549 sum -1.210 -27.032 -3.842 27.331 Atomic orbital electron populations 1.21835 0.91985 1.04274 1.02906 1.23186 0.96676 0.80229 1.03064 1.86119 1.18518 1.32133 1.87972 1.18882 0.83287 0.93299 0.93935 1.21453 0.92982 0.99078 1.09598 1.20972 0.95106 0.94944 0.94557 1.20568 0.84577 0.93865 1.15730 1.98360 1.10101 1.97372 1.97405 1.16968 0.91202 0.82713 0.97772 1.42485 1.20323 1.04603 1.64313 1.15802 0.83630 0.80662 0.79133 1.90902 1.22843 1.84039 1.49957 1.44688 1.25338 1.03557 1.63478 1.20679 0.94295 0.82733 1.01072 1.20361 0.87560 0.85737 0.84343 1.90477 1.24377 1.87180 1.49161 1.41817 1.20846 1.05084 1.51578 1.19699 1.04398 0.84263 1.38310 0.89513 1.26132 0.96888 1.02512 0.95630 1.69671 1.17475 1.29484 1.38896 0.84928 0.77961 0.76284 0.78818 1.19488 1.19660 1.19490 1.20459 0.93438 0.97216 1.09618 0.92418 0.92183 0.87671 0.89973 0.90325 0.81285 0.81133 0.73976 0.74899 0.88433 0.88514 0.76632 0.91044 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.04 0.51 5.46 71.98 0.39 0.90 16 3 O -0.33 -7.38 10.14 -92.57 -0.94 -8.31 16 4 C 0.15 3.47 6.68 22.49 0.15 3.62 16 5 C -0.21 -3.27 9.04 22.39 0.20 -3.07 16 6 C -0.04 -0.56 9.82 22.26 0.22 -0.34 16 7 C -0.12 -2.40 6.34 22.45 0.14 -2.26 16 8 Cl -0.06 -1.13 27.77 -2.72 -0.08 -1.20 16 9 C 0.21 5.45 6.43 38.14 0.25 5.70 16 10 N -0.67 -17.69 5.20 -317.13 -1.65 -19.34 16 11 C 0.71 22.96 8.37 179.05 1.50 24.45 16 12 O -0.60 -22.79 13.51 -4.00 -0.05 -22.85 16 13 N -0.71 -23.45 5.53 -482.30 -2.67 -26.12 16 14 C 0.14 5.07 6.15 85.63 0.53 5.60 16 15 C 0.43 19.77 7.85 87.66 0.69 20.46 16 16 O -0.62 -31.87 15.24 -3.07 -0.05 -31.92 16 17 N -0.56 -27.82 5.29 -306.98 -1.62 -29.44 16 18 C -0.34 -18.49 9.68 84.04 0.81 -17.68 16 19 H 0.09 4.99 7.16 -2.91 -0.02 4.96 16 20 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 21 N -0.92 -48.55 13.05 21.66 0.28 -48.27 16 22 Si 1.00 41.68 29.55 68.60 2.03 43.71 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 C -0.19 -5.26 8.65 22.48 0.19 -5.06 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.48 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.67 7.66 -2.39 -0.02 0.65 16 31 H 0.08 0.70 7.66 -2.39 -0.02 0.68 16 32 H 0.17 1.39 6.29 -2.91 -0.02 1.37 16 33 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.42 9.27 7.76 -92.70 -0.72 8.56 16 35 H 0.41 13.18 7.46 -92.71 -0.69 12.49 16 36 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 37 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 38 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 39 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 40 H 0.14 4.66 5.79 -2.91 -0.02 4.65 16 Total: -1.00 -68.91 361.59 0.53 -68.38 By element: Atomic # 1 Polarization: 44.96 SS G_CDS: -1.01 Total: 43.95 kcal Atomic # 6 Polarization: 25.13 SS G_CDS: 6.28 Total: 31.41 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -5.66 Total: -123.16 kcal Atomic # 8 Polarization: -62.04 SS G_CDS: -1.04 Total: -63.08 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.20 kcal Total: -68.91 0.53 -68.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455761598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.649 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds