Wall clock time and date at job start Sat Apr 11 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65601 * 120.00051 * 2 1 4 4 O 1.42103 * 104.27601 * 178.86174 * 3 2 1 5 5 O 1.42099 * 104.28144 * 51.00088 * 3 2 1 6 6 C 1.81401 * 104.44732 * 294.92809 * 3 2 1 7 7 H 1.08998 * 110.91730 * 61.14196 * 6 3 2 8 8 C 1.55446 * 111.11852 * 297.15100 * 6 3 2 9 9 C 1.54329 * 102.97007 * 206.46547 * 8 6 3 10 10 N 1.47029 * 107.27067 * 22.19007 * 9 8 6 11 11 S 1.65590 * 125.64809 * 181.08162 * 10 9 8 12 12 O 1.42102 * 106.40425 * 23.51811 * 11 10 9 13 13 O 1.42102 * 106.40383 * 156.43440 * 11 10 9 14 14 N 1.65594 * 107.21901 * 269.97734 * 11 10 9 15 15 C 1.46510 * 119.99847 * 269.99833 * 14 11 10 16 16 C 1.46498 * 120.00251 * 90.00156 * 14 11 10 17 17 C 1.50702 * 109.47282 * 95.00285 * 16 14 11 18 18 H 1.08002 * 119.99647 * 359.97438 * 17 16 14 19 19 C 1.37873 * 120.00004 * 180.02562 * 17 16 14 20 20 N 1.31517 * 120.00070 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99957 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.46896 * 90.00338 * 21 19 17 23 23 H 1.48506 * 109.47135 * 209.99906 * 21 19 17 24 24 H 1.48500 * 109.47360 * 330.00082 * 21 19 17 25 25 C 1.47423 * 108.70190 * 1.05965 * 10 9 8 26 26 H 1.08992 * 109.47394 * 184.86082 * 1 2 3 27 27 H 1.09005 * 109.47156 * 304.86676 * 1 2 3 28 28 H 1.09009 * 109.47102 * 64.86048 * 1 2 3 29 29 H 0.96999 * 119.99795 * 179.97438 * 2 1 3 30 30 H 1.08992 * 110.71311 * 88.09110 * 8 6 3 31 31 H 1.09004 * 110.70933 * 324.83046 * 8 6 3 32 32 H 1.09002 * 109.88253 * 262.77613 * 9 8 6 33 33 H 1.09000 * 110.01300 * 141.67610 * 9 8 6 34 34 H 1.08995 * 109.46842 * 90.00301 * 15 14 11 35 35 H 1.08999 * 109.47095 * 210.00296 * 15 14 11 36 36 H 1.08994 * 109.47088 * 330.00098 * 15 14 11 37 37 H 1.09005 * 109.47080 * 214.99918 * 16 14 11 38 38 H 1.08992 * 109.47086 * 334.99725 * 16 14 11 39 39 H 0.96998 * 120.00070 * 180.02562 * 20 19 17 40 40 H 1.09007 * 110.36459 * 94.70778 * 25 10 9 41 41 H 1.08998 * 110.36991 * 216.91983 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6606 1.0492 0.0274 5 8 1.7178 2.1710 1.0702 6 6 1.8781 2.1963 -1.5930 7 1 0.8061 2.3778 -1.6701 8 6 2.3826 1.3264 -2.7784 9 6 2.5795 2.3600 -3.9073 10 7 2.7410 3.6758 -3.2713 11 16 2.9556 5.1123 -4.0665 12 8 2.4159 4.9345 -5.3690 13 8 2.5205 6.1320 -3.1776 14 7 4.5861 5.3260 -4.2611 15 6 5.3605 6.0285 -3.2347 16 6 5.2543 4.8128 -5.4595 17 6 5.3519 5.9092 -6.4888 18 1 4.9553 6.8901 -6.2720 19 6 5.9463 5.6598 -7.7075 20 7 6.4279 4.4648 -7.9720 21 14 6.0666 7.0187 -8.9836 22 1 7.3378 7.7628 -8.7959 23 1 6.0374 6.4241 -10.3442 24 1 4.9202 7.9492 -8.8254 25 6 2.6797 3.5043 -1.8084 26 1 -0.3634 -1.0239 0.0871 27 1 -0.3634 0.5875 0.8432 28 1 -0.3634 0.4366 -0.9304 29 1 1.9499 -0.8401 0.0004 30 1 1.6336 0.5862 -3.0595 31 1 3.3277 0.8444 -2.5279 32 1 1.7057 2.3681 -4.5590 33 1 3.4707 2.1159 -4.4854 34 1 5.7267 5.3104 -2.5010 35 1 6.2057 6.5351 -3.7005 36 1 4.7251 6.7624 -2.7391 37 1 6.2554 4.4694 -5.1985 38 1 4.6800 3.9812 -5.8677 39 1 6.8464 4.2894 -8.8293 40 1 3.6838 3.4061 -1.3955 41 1 2.1621 4.3464 -1.3490 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533544432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:35 Heat of formation + Delta-G solvation = -165.481618 kcal Electronic energy + Delta-G solvation = -27052.190167 eV Core-core repulsion = 23027.323715 eV Total energy + Delta-G solvation = -4024.866452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.54534 -38.40572 -38.24266 -37.27437 -37.11078 -36.95124 -35.84726 -34.53580 -32.26612 -30.35542 -29.69541 -26.84328 -26.74650 -24.40903 -24.02271 -22.84855 -20.28551 -20.17826 -19.19682 -18.91033 -18.55199 -18.39590 -17.79351 -17.29308 -17.15785 -16.52727 -16.21180 -15.77118 -15.27203 -15.10387 -14.90154 -14.72636 -14.58150 -14.45666 -14.10107 -13.98571 -13.75599 -13.48522 -13.41280 -13.30344 -13.21037 -13.16261 -13.08134 -12.97458 -12.82688 -12.62523 -12.51402 -12.45660 -12.42096 -12.14060 -11.99983 -11.78549 -11.66895 -10.62407 -10.41671 -10.20352 -9.84678 -8.22907 -6.35056 -0.87015 -0.47898 1.38026 1.39914 1.50675 1.71762 1.91972 2.37172 2.48580 2.64053 2.87833 3.07880 3.16475 3.24272 3.54277 3.84366 4.03221 4.10841 4.18533 4.28578 4.35539 4.56857 4.61508 4.66361 4.71212 4.75199 4.79716 4.89970 4.97419 5.00988 5.05942 5.09843 5.12684 5.25180 5.44315 5.66429 5.87655 6.07005 6.16533 6.72568 7.33906 8.84749 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.024318 B = 0.003105 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.136847 B = 9016.611186 C = 9204.000394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -1.109 6.109 3 S 2.642 3.358 4 O -0.981 6.981 5 O -0.985 6.985 6 C -0.600 4.600 7 H 0.178 0.822 8 C -0.093 4.093 9 C 0.110 3.890 10 N -1.015 6.015 11 S 2.806 3.194 12 O -0.997 6.997 13 O -1.002 7.002 14 N -1.005 6.005 15 C 0.085 3.915 16 C 0.272 3.728 17 C -0.552 4.552 18 H 0.051 0.949 19 C 0.014 3.986 20 N -0.922 5.922 21 Si 0.957 3.043 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.275 1.275 25 C 0.121 3.879 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.428 0.572 30 H 0.138 0.862 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.028 0.972 38 H 0.019 0.981 39 H 0.268 0.732 40 H 0.084 0.916 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 -12.781 15.909 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.872 5.872 3 S 2.732 3.268 4 O -0.971 6.971 5 O -0.974 6.974 6 C -0.711 4.711 7 H 0.195 0.805 8 C -0.133 4.133 9 C -0.016 4.016 10 N -0.856 5.856 11 S 2.816 3.184 12 O -0.981 6.981 13 O -0.986 6.986 14 N -0.847 5.847 15 C -0.060 4.060 16 C 0.148 3.852 17 C -0.592 4.592 18 H 0.069 0.931 19 C -0.186 4.186 20 N -0.561 5.561 21 Si 0.782 3.218 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.200 1.200 25 C -0.006 4.006 26 H 0.125 0.875 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.265 0.735 30 H 0.156 0.844 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.548 -11.717 16.140 23.047 hybrid contribution 0.477 0.288 -1.455 1.558 sum -11.071 -11.430 14.685 21.653 Atomic orbital electron populations 1.21829 0.77160 1.06126 1.02742 1.55010 1.16871 1.23552 1.91739 1.03973 0.72956 0.74169 0.75679 1.93583 1.34605 1.81625 1.87289 1.93576 1.79308 1.73671 1.50876 1.31961 1.12352 1.06188 1.20586 0.80482 1.22615 1.04289 0.96272 0.90099 1.21944 1.02409 0.80818 0.96404 1.59035 1.88229 1.23235 1.15143 1.00981 0.73067 0.72461 0.71903 1.93570 1.78259 1.86347 1.39947 1.93500 1.81357 1.56216 1.67508 1.57631 1.27504 1.70085 1.29452 1.21607 0.97411 0.96986 0.89989 1.18639 0.92830 0.93369 0.80332 1.21812 1.38571 0.98108 1.00670 0.93111 1.25734 0.94759 0.98107 1.00000 1.69999 1.39590 1.22063 1.24484 0.85575 0.78756 0.79198 0.78312 1.19094 1.20154 1.19978 1.21936 1.00402 0.97155 0.81133 0.87514 0.92120 0.90165 0.73500 0.84419 0.88298 0.90191 0.91608 0.91102 0.90773 0.90522 0.95435 0.96290 0.92262 0.89823 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 11.08 127.77 1.42 1.72 16 2 N -1.11 -9.41 6.07 -206.53 -1.25 -10.67 16 3 S 2.64 43.38 5.00 -56.49 -0.28 43.09 16 4 O -0.98 -22.56 17.63 -127.65 -2.25 -24.81 16 5 O -0.98 -22.93 17.65 -127.65 -2.25 -25.19 16 6 C -0.60 -8.96 3.69 32.09 0.12 -8.84 16 7 H 0.18 1.59 8.08 -2.39 -0.02 1.57 16 8 C -0.09 -1.32 6.44 31.89 0.21 -1.11 16 9 C 0.11 2.67 6.99 86.73 0.61 3.28 16 10 N -1.02 -30.18 3.76 -506.38 -1.90 -32.09 16 11 S 2.81 113.02 6.31 -56.49 -0.36 112.66 16 12 O -1.00 -48.28 16.69 -128.00 -2.14 -50.41 16 13 O -1.00 -41.32 16.06 -128.00 -2.06 -43.38 16 14 N -1.01 -42.62 3.23 -543.22 -1.75 -44.37 16 15 C 0.09 2.95 10.68 127.77 1.36 4.31 16 16 C 0.27 13.90 5.08 85.63 0.43 14.34 16 17 C -0.55 -31.55 9.38 25.60 0.24 -31.31 16 18 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 19 C 0.01 0.78 5.46 84.65 0.46 1.25 16 20 N -0.92 -53.75 13.29 21.45 0.28 -53.46 16 21 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 25 C 0.12 2.78 6.58 86.86 0.57 3.35 16 26 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 27 H 0.06 0.42 7.92 -2.38 -0.02 0.40 16 28 H 0.08 0.06 8.08 -2.38 -0.02 0.04 16 29 H 0.43 2.26 8.92 -96.75 -0.86 1.39 16 30 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 1.34 7.65 -2.38 -0.02 1.32 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 2.62 8.07 -2.39 -0.02 2.60 16 36 H 0.08 2.47 7.02 -2.39 -0.02 2.45 16 37 H 0.03 1.43 8.11 -2.38 -0.02 1.41 16 38 H 0.02 1.03 7.61 -2.39 -0.02 1.01 16 39 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 40 H 0.08 1.77 8.03 -2.38 -0.02 1.75 16 41 H 0.10 2.26 7.78 -2.39 -0.02 2.24 16 Total: -1.00 -84.17 366.00 -6.33 -90.50 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 0.18 Total: 4.46 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 5.42 Total: -13.02 kcal Atomic # 7 Polarization: -135.96 SS G_CDS: -4.62 Total: -140.58 kcal Atomic # 8 Polarization: -135.09 SS G_CDS: -8.69 Total: -143.78 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 156.39 SS G_CDS: -0.64 Total: 155.75 kcal Total: -84.17 -6.33 -90.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533544432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.985 kcal (2) G-P(sol) polarization free energy of solvation -84.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds