Wall clock time and date at job start Sat Apr 11 2020 06:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 S 1.81405 * 109.47485 * 2 1 4 4 C 1.81398 * 103.00244 * 185.25330 * 3 2 1 5 5 C 1.53003 * 115.55007 * 294.03604 * 4 3 2 6 6 N 1.46495 * 109.47348 * 278.55989 * 5 4 3 7 7 S 1.65596 * 120.00447 * 163.06294 * 6 5 4 8 8 O 1.42099 * 106.40316 * 311.45462 * 7 6 5 9 9 O 1.42103 * 106.40310 * 178.53698 * 7 6 5 10 10 C 1.76192 * 107.21994 * 64.99670 * 7 6 5 11 11 C 1.38661 * 119.87705 * 269.98380 * 10 7 6 12 12 C 1.38609 * 120.50301 * 180.02562 * 11 10 7 13 13 C 1.37644 * 120.25061 * 359.97438 * 12 11 10 14 14 C 1.40704 * 119.73937 * 0.02562 * 13 12 11 15 15 C 1.41401 * 120.23905 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00092 * 336.51239 * 15 14 13 17 17 C 1.39942 * 119.99615 * 156.51554 * 15 14 13 18 18 N 1.30822 * 120.00343 * 341.31329 * 17 15 14 19 19 Si 1.86798 * 119.99932 * 161.31836 * 17 15 14 20 20 H 1.48503 * 109.46961 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47390 * 119.99640 * 19 17 15 22 22 H 1.48497 * 109.47313 * 239.99852 * 19 17 15 23 23 C 1.37600 * 119.87947 * 89.99993 * 10 7 6 24 24 C 1.52998 * 117.49857 * 79.70201 * 4 3 2 25 25 C 1.52993 * 117.49860 * 148.36694 * 4 3 2 26 26 H 1.08999 * 109.47355 * 59.99216 * 1 2 3 27 27 H 1.08994 * 109.47819 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46807 * 299.99550 * 1 2 3 29 29 H 1.09003 * 109.46807 * 240.00450 * 2 1 3 30 30 H 1.08998 * 109.47408 * 120.00230 * 2 1 3 31 31 H 1.08996 * 109.47136 * 158.55128 * 5 4 3 32 32 H 1.09011 * 109.46913 * 38.55595 * 5 4 3 33 33 H 0.97012 * 119.99608 * 343.05660 * 6 5 4 34 34 H 1.08002 * 119.74545 * 359.97438 * 11 10 7 35 35 H 1.08000 * 119.87645 * 179.97438 * 12 11 10 36 36 H 1.07996 * 120.13305 * 180.02562 * 13 12 11 37 37 H 0.97001 * 120.00386 * 179.97438 * 18 17 15 38 38 H 1.08003 * 120.12322 * 0.25356 * 23 10 7 39 39 H 1.08995 * 117.50159 * 215.00063 * 24 4 3 40 40 H 1.09002 * 117.49995 * 0.02905 * 24 4 3 41 41 H 1.09001 * 117.49958 * 359.97091 * 25 4 3 42 42 H 1.08997 * 117.49851 * 144.97361 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9301 1.5083 -0.1618 5 6 4.6282 0.8378 1.0231 6 7 4.8601 1.8281 2.0774 7 16 5.2066 1.3312 3.6186 8 8 4.2376 0.3461 3.9500 9 8 5.4089 2.5108 4.3847 10 6 6.7601 0.5019 3.5625 11 6 6.8056 -0.8646 3.3317 12 6 8.0206 -1.5302 3.2854 13 6 9.1970 -0.8395 3.4680 14 6 9.1629 0.5474 3.7029 15 6 10.3651 1.2675 3.8913 16 1 11.2535 0.7559 4.2311 17 6 10.4037 2.6432 3.6376 18 7 9.4790 3.1981 2.8971 19 14 11.7759 3.6873 4.3562 20 1 12.6883 2.8266 5.1512 21 1 12.5364 4.3313 3.2552 22 1 11.1937 4.7340 5.2340 23 6 7.9236 1.2126 3.7481 24 6 4.4865 1.2294 -1.5595 25 6 4.6992 2.5990 -0.9098 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.5825 0.4247 0.6963 32 1 3.9986 0.0363 1.4097 33 1 4.8108 2.7751 1.8727 34 1 5.8874 -1.4147 3.1877 35 1 8.0442 -2.5949 3.1053 36 1 10.1426 -1.3599 3.4311 37 1 9.5055 4.1517 2.7216 38 1 7.8857 2.2761 3.9320 39 1 5.3499 0.5684 -1.6349 40 1 3.7738 1.1677 -2.3819 41 1 4.1262 3.4378 -1.3051 42 1 5.7023 2.8393 -0.5575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595351346.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:45 Heat of formation + Delta-G solvation = -58.242990 kcal Electronic energy + Delta-G solvation = -25371.888603 eV Core-core repulsion = 21762.521629 eV Total energy + Delta-G solvation = -3609.366973 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.44604 -39.02364 -38.24321 -36.92713 -35.65927 -35.06978 -33.62954 -32.08688 -31.40095 -27.81858 -27.33480 -24.49946 -23.62765 -23.35183 -22.97136 -21.94043 -20.47056 -19.61190 -18.66126 -18.02974 -17.69060 -16.93568 -16.76800 -16.56588 -16.39079 -16.03684 -15.64247 -15.33510 -15.08514 -15.01052 -14.48729 -14.41537 -14.00871 -13.69618 -13.36174 -13.28594 -13.21333 -13.16602 -13.07685 -12.88720 -12.87642 -12.59564 -12.52687 -12.34926 -12.30642 -12.24759 -11.83628 -11.67100 -11.44573 -11.22828 -11.15013 -10.72647 -10.39503 -9.92444 -9.49759 -8.76434 -8.63623 -6.43733 -0.50517 0.37639 0.69750 0.90660 1.36736 1.45368 1.51731 1.56094 2.07366 2.16293 2.53004 2.69085 2.79713 3.39350 3.51337 3.58350 3.60646 3.91137 4.05820 4.11702 4.29783 4.35236 4.50277 4.52164 4.57768 4.67473 4.71505 4.71735 4.82677 4.89944 4.94666 4.95960 5.00033 5.07900 5.18948 5.22908 5.23476 5.40743 5.61298 5.82414 5.92705 6.02609 6.18387 6.45343 6.80181 6.84646 8.22742 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.003485 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.415661 B = 8032.438722 C = 8526.428890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 S -0.232 6.232 4 C -0.134 4.134 5 C 0.159 3.841 6 N -1.100 6.100 7 S 2.714 3.286 8 O -0.987 6.987 9 O -1.001 7.001 10 C -0.647 4.647 11 C -0.161 4.161 12 C -0.103 4.103 13 C -0.197 4.197 14 C 0.060 3.940 15 C -0.492 4.492 16 H 0.083 0.917 17 C 0.034 3.966 18 N -0.817 5.817 19 Si 0.979 3.021 20 H -0.256 1.256 21 H -0.261 1.261 22 H -0.268 1.268 23 C -0.088 4.088 24 C -0.127 4.127 25 C -0.134 4.134 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.423 0.577 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.112 0.888 37 H 0.292 0.708 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.699 -3.171 -10.922 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.242 4.242 3 S -0.003 6.003 4 C -0.246 4.246 5 C 0.031 3.969 6 N -0.861 5.861 7 S 2.808 3.192 8 O -0.977 6.977 9 O -0.991 6.991 10 C -0.737 4.737 11 C -0.182 4.182 12 C -0.122 4.122 13 C -0.217 4.217 14 C 0.056 3.944 15 C -0.521 4.521 16 H 0.101 0.899 17 C -0.182 4.182 18 N -0.442 5.442 19 Si 0.800 3.200 20 H -0.179 1.179 21 H -0.185 1.185 22 H -0.193 1.193 23 C -0.109 4.109 24 C -0.167 4.167 25 C -0.173 4.173 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.259 0.741 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.948 -2.073 -10.155 15.817 hybrid contribution 2.048 -0.331 0.113 2.078 sum -9.901 -2.403 -10.041 14.305 Atomic orbital electron populations 1.21513 0.91188 1.03664 1.02800 1.23457 1.00823 0.94288 1.05612 1.86565 1.01940 1.14580 1.97175 1.23577 0.93661 1.11105 0.96296 1.20982 0.99887 0.89789 0.86214 1.55120 1.87497 1.16649 1.26823 1.00812 0.73556 0.72380 0.72436 1.93476 1.59366 1.62093 1.82730 1.93498 1.87250 1.49242 1.69121 1.30257 1.18817 1.06207 1.18408 1.20414 0.98410 0.91673 1.07664 1.21043 0.92112 0.99572 0.99488 1.21495 0.97867 0.94704 1.07668 1.18075 0.93423 0.92773 0.90082 1.19889 0.97236 0.93894 1.41080 0.89852 1.26775 0.99605 0.99372 0.92451 1.69774 1.33559 1.14268 1.26573 0.85193 0.77829 0.77886 0.79136 1.17941 1.18530 1.19312 1.21081 0.91283 0.99305 0.99267 1.23450 1.03032 0.98655 0.91575 1.23066 1.00578 0.93137 1.00491 0.91273 0.89243 0.92693 0.88418 0.90626 0.90406 0.90241 0.74132 0.85319 0.84563 0.86966 0.89672 0.86625 0.86944 0.85947 0.86835 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.92 71.98 0.71 -1.28 16 2 C -0.09 -1.72 6.49 71.98 0.47 -1.26 16 3 S -0.23 -5.32 21.65 -56.49 -1.22 -6.55 16 4 C -0.13 -2.99 2.06 -10.80 -0.02 -3.01 16 5 C 0.16 4.33 6.17 86.38 0.53 4.86 16 6 N -1.10 -35.40 5.96 -187.49 -1.12 -36.52 16 7 S 2.71 110.32 5.73 -56.49 -0.32 110.00 16 8 O -0.99 -41.46 16.71 -128.00 -2.14 -43.60 16 9 O -1.00 -47.26 17.26 -128.00 -2.21 -49.47 16 10 C -0.65 -29.34 5.94 22.22 0.13 -29.20 16 11 C -0.16 -6.66 9.53 22.46 0.21 -6.45 16 12 C -0.10 -4.18 10.02 22.22 0.22 -3.96 16 13 C -0.20 -9.07 9.80 22.73 0.22 -8.85 16 14 C 0.06 3.13 5.58 -21.29 -0.12 3.01 16 15 C -0.49 -25.57 9.05 23.46 0.21 -25.36 16 16 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 17 C 0.03 1.67 5.13 85.26 0.44 2.11 16 18 N -0.82 -41.19 10.95 21.83 0.24 -40.95 16 19 Si 0.98 37.37 29.60 68.60 2.03 39.40 16 20 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 21 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 22 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 23 C -0.09 -4.59 8.17 22.73 0.19 -4.40 16 24 C -0.13 -2.14 9.94 30.62 0.30 -1.84 16 25 C -0.13 -2.67 9.72 30.62 0.30 -2.37 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.09 1.01 8.14 -2.39 -0.02 1.00 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.55 7.56 -2.39 -0.02 1.53 16 31 H 0.08 2.08 7.93 -2.39 -0.02 2.06 16 32 H 0.08 2.16 6.96 -2.38 -0.02 2.14 16 33 H 0.42 12.56 8.43 -96.73 -0.82 11.75 16 34 H 0.13 4.65 7.60 -2.91 -0.02 4.63 16 35 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 36 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 37 H 0.29 13.32 8.30 -92.71 -0.77 12.56 16 38 H 0.12 6.42 5.67 -2.91 -0.02 6.41 16 39 H 0.11 1.77 8.07 -2.39 -0.02 1.76 16 40 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -65.63 378.25 -0.72 -66.35 By element: Atomic # 1 Polarization: 39.12 SS G_CDS: 0.22 Total: 39.34 kcal Atomic # 6 Polarization: -81.80 SS G_CDS: 3.80 Total: -78.00 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -0.88 Total: -77.47 kcal Atomic # 8 Polarization: -88.72 SS G_CDS: -4.35 Total: -93.07 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Atomic # 16 Polarization: 105.00 SS G_CDS: -1.55 Total: 103.45 kcal Total: -65.63 -0.72 -66.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595351346.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.108 kcal (2) G-P(sol) polarization free energy of solvation -65.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds