Wall clock time and date at job start Sat Apr 11 2020 06:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47373 * 2 1 4 4 C 1.50700 * 109.47434 * 239.99868 * 2 1 3 5 5 H 1.08002 * 119.99752 * 240.00477 * 4 2 1 6 6 C 1.37872 * 119.99830 * 59.99736 * 4 2 1 7 7 N 1.31513 * 120.00186 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00047 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46740 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47213 * 120.00327 * 8 6 4 11 11 H 1.48500 * 109.47035 * 240.00328 * 8 6 4 12 12 N 1.46501 * 109.46930 * 119.99757 * 2 1 3 13 13 C 1.46506 * 120.00098 * 60.00307 * 12 2 1 14 14 S 1.65599 * 120.00111 * 239.99986 * 12 2 1 15 15 O 1.42099 * 106.40401 * 23.54139 * 14 12 2 16 16 O 1.42103 * 106.40122 * 156.46115 * 14 12 2 17 17 N 1.65600 * 107.21815 * 270.00257 * 14 12 2 18 18 C 1.47070 * 136.05594 * 269.62801 * 17 14 12 19 19 C 1.53753 * 87.88782 * 152.96491 * 18 17 14 20 20 N 1.46498 * 114.39398 * 272.67731 * 19 18 17 21 21 S 1.65600 * 119.99992 * 238.58511 * 20 19 18 22 22 C 1.81405 * 104.45116 * 65.00105 * 21 20 19 23 23 O 1.42099 * 104.27964 * 181.06873 * 21 20 19 24 24 O 1.42096 * 104.27701 * 308.93169 * 21 20 19 25 25 C 1.47064 * 136.05970 * 90.00128 * 17 14 12 26 26 H 1.09000 * 109.47373 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47624 * 300.00030 * 1 2 3 28 28 H 1.09001 * 109.46985 * 59.99941 * 1 2 3 29 29 H 0.96996 * 120.00238 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47060 * 270.00243 * 13 12 2 31 31 H 1.09004 * 109.47073 * 29.99732 * 13 12 2 32 32 H 1.09000 * 109.47212 * 149.99814 * 13 12 2 33 33 H 1.08999 * 113.46928 * 267.69805 * 18 17 14 34 34 H 1.09004 * 113.46787 * 38.12979 * 18 17 14 35 35 H 1.09000 * 114.09016 * 139.78185 * 19 18 17 36 36 H 0.97001 * 120.00590 * 58.58419 * 20 19 18 37 37 H 1.08999 * 109.47084 * 59.99890 * 22 21 20 38 38 H 1.08994 * 109.47448 * 180.02562 * 22 21 20 39 39 H 1.09008 * 109.46525 * 300.00294 * 22 21 20 40 40 H 1.09001 * 113.46651 * 321.86328 * 25 17 14 41 41 H 1.09000 * 113.46868 * 92.30312 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1456 -2.2878 -3.6036 10 1 1.1662 -1.5867 -4.8161 11 1 3.1467 -0.1874 -4.8164 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1142 2.2863 15 8 2.6903 1.4973 2.1193 16 8 2.8226 -0.5645 3.5260 17 7 4.5437 -0.1042 1.8181 18 6 5.6058 -1.0821 2.0982 19 6 6.1986 -0.7479 0.7194 20 7 5.6460 -1.5371 -0.3842 21 16 6.6472 -2.4670 -1.3196 22 6 7.2851 -3.7292 -0.1836 23 8 5.7822 -3.0541 -2.2822 24 8 7.6849 -1.5792 -1.7120 25 6 5.4957 0.5980 0.9444 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7089 1.1612 -3.4844 30 1 0.7375 -2.1444 1.9994 31 1 1.5295 -2.5969 0.4709 32 1 2.4628 -2.5819 1.9865 33 1 6.2510 -0.7962 2.9289 34 1 5.2423 -2.1065 2.1795 35 1 7.2868 -0.6871 0.7059 36 1 4.6936 -1.5150 -0.5670 37 1 6.4541 -4.3067 0.2216 38 1 7.9617 -4.3934 -0.7212 39 1 7.8230 -3.2455 0.6318 40 1 5.0384 1.0050 0.0425 41 1 6.1119 1.3268 1.4709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599422853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:51 Heat of formation + Delta-G solvation = -95.838955 kcal Electronic energy + Delta-G solvation = -28268.992787 eV Core-core repulsion = 24247.146268 eV Total energy + Delta-G solvation = -4021.846520 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.58104 -37.03316 -36.72375 -36.18705 -35.89872 -35.30743 -33.24430 -32.62698 -29.62586 -29.11918 -27.50662 -25.98513 -25.52724 -25.21332 -21.30149 -20.65892 -19.57416 -18.41967 -17.78833 -17.22765 -16.87425 -16.48783 -16.32382 -16.07913 -15.60137 -15.18017 -14.78956 -14.42544 -13.95826 -13.50679 -13.43235 -13.34618 -13.30359 -12.93320 -12.84506 -12.66898 -12.05932 -12.00954 -11.96219 -11.93753 -11.86134 -11.60649 -11.42207 -11.33771 -11.23179 -11.03585 -10.97571 -10.85970 -10.81602 -10.38450 -10.23175 -10.06719 -9.43237 -9.33124 -8.94938 -8.49388 -8.02031 -6.11383 -4.21925 0.23051 1.06431 2.66446 3.29666 3.35149 3.40465 3.54628 3.80287 4.01741 4.11447 4.28528 4.39657 4.57817 4.65099 4.71532 4.79458 5.00875 5.18439 5.20805 5.39495 5.45613 5.52384 5.58254 5.81343 6.04772 6.10812 6.21702 6.25815 6.55395 6.63481 6.84673 6.86455 7.06065 7.15302 7.43397 7.59103 7.75166 8.01199 8.21660 8.81011 9.46978 10.92760 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.009349 B = 0.007362 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.150622 B = 3802.296405 C = 5876.354435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.071 3.929 7 N -0.883 5.883 8 Si 0.874 3.126 9 H -0.253 1.253 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.988 5.988 13 C 0.106 3.894 14 S 2.801 3.199 15 O -0.974 6.974 16 O -0.994 6.994 17 N -1.048 6.048 18 C 0.110 3.890 19 C 0.110 3.890 20 N -1.093 6.093 21 S 2.607 3.393 22 C -0.676 4.676 23 O -0.946 6.946 24 O -0.958 6.958 25 C 0.124 3.876 26 H 0.032 0.968 27 H 0.011 0.989 28 H 0.093 0.907 29 H 0.264 0.736 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.433 0.567 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.094 0.906 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.556 -7.488 7.698 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.569 4.569 5 H 0.081 0.919 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.700 3.300 9 H -0.176 1.176 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.830 5.830 13 C -0.040 4.040 14 S 2.812 3.188 15 O -0.959 6.959 16 O -0.978 6.978 17 N -0.887 5.887 18 C -0.018 4.018 19 C -0.001 4.001 20 N -0.854 5.854 21 S 2.698 3.302 22 C -0.825 4.825 23 O -0.937 6.937 24 O -0.948 6.948 25 C -0.004 4.004 26 H 0.052 0.948 27 H 0.030 0.970 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.137 0.863 36 H 0.273 0.727 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.112 0.888 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.295 -6.733 7.507 15.901 hybrid contribution -0.143 -0.981 -0.576 1.147 sum 12.151 -7.714 6.932 15.975 Atomic orbital electron populations 1.22047 0.97917 0.99670 1.00721 1.18763 0.91950 0.92719 0.80141 0.92384 1.21318 1.32381 1.13133 0.90026 0.91884 1.24872 0.94664 0.94774 0.98959 1.69880 1.35906 1.22455 1.23846 0.86771 0.79093 0.80970 0.83137 1.17641 1.21005 1.20873 1.57815 1.63575 1.21496 1.40126 1.21195 0.98925 0.82015 1.01902 1.01272 0.71401 0.73306 0.72799 1.93583 1.83308 1.32252 1.86726 1.93534 1.85701 1.76564 1.42047 1.60681 1.25890 1.39554 1.62567 1.23032 0.88114 0.93813 0.96870 1.22156 0.97772 0.93635 0.86555 1.55412 1.23725 1.59814 1.46431 1.04997 0.74476 0.75763 0.74990 1.30600 1.13545 1.19752 1.18607 1.93687 1.64378 1.78934 1.56668 1.93610 1.59163 1.61706 1.80320 1.22759 0.89017 0.94290 0.94317 0.94850 0.97002 0.88890 0.92635 0.93820 0.90037 0.93402 0.89021 0.90343 0.86336 0.72707 0.85147 0.85627 0.85426 0.88785 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.97 37.16 0.33 -3.02 16 2 C 0.27 6.26 2.62 -69.08 -0.18 6.08 16 3 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 4 C -0.53 -12.89 7.97 -34.44 -0.27 -13.16 16 5 H 0.06 1.46 6.28 -52.49 -0.33 1.13 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -23.96 11.32 55.43 0.63 -23.33 16 8 Si 0.87 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.25 -6.05 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.99 -19.49 3.12 -115.85 -0.36 -19.85 16 13 C 0.11 1.79 9.28 59.85 0.56 2.35 16 14 S 2.80 53.08 6.64 -107.50 -0.71 52.37 16 15 O -0.97 -21.86 16.70 -57.17 -0.95 -22.81 16 16 O -0.99 -19.75 17.21 -57.17 -0.98 -20.73 16 17 N -1.05 -15.27 4.29 -125.04 -0.54 -15.81 16 18 C 0.11 1.09 8.56 -8.37 -0.07 1.02 16 19 C 0.11 1.11 4.66 -67.68 -0.32 0.79 16 20 N -1.09 -13.73 5.72 -4.61 -0.03 -13.75 16 21 S 2.61 31.23 6.07 -107.50 -0.65 30.57 16 22 C -0.68 -4.42 10.89 101.05 1.10 -3.32 16 23 O -0.95 -16.01 18.08 -57.54 -1.04 -17.05 16 24 O -0.96 -13.83 17.62 -57.54 -1.01 -14.84 16 25 C 0.12 1.55 8.53 -8.51 -0.07 1.48 16 26 H 0.03 0.72 7.67 -51.93 -0.40 0.33 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 32 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.12 0.77 7.82 -51.93 -0.41 0.37 16 36 H 0.43 6.57 7.84 -34.46 -0.27 6.30 16 37 H 0.13 0.74 8.14 -51.92 -0.42 0.31 16 38 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.13 0.54 8.14 -51.92 -0.42 0.11 16 40 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -36.61 363.40 -10.01 -46.61 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.79 Total: 3.53 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 0.98 Total: -6.05 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -0.30 Total: -72.74 kcal Atomic # 8 Polarization: -71.45 SS G_CDS: -3.99 Total: -75.44 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 84.31 SS G_CDS: -1.37 Total: 82.94 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.61 -10.01 -46.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599422853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.225 kcal (2) G-P(sol) polarization free energy of solvation -36.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds