Wall clock time and date at job start Sat Apr 11 2020 06:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47373 * 2 1 4 4 C 1.50700 * 109.47434 * 239.99868 * 2 1 3 5 5 H 1.08002 * 119.99752 * 240.00477 * 4 2 1 6 6 C 1.37872 * 119.99830 * 59.99736 * 4 2 1 7 7 N 1.31513 * 120.00186 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00047 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46740 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47213 * 120.00327 * 8 6 4 11 11 H 1.48500 * 109.47035 * 240.00328 * 8 6 4 12 12 N 1.46501 * 109.46930 * 119.99757 * 2 1 3 13 13 C 1.46506 * 120.00098 * 60.00307 * 12 2 1 14 14 S 1.65599 * 120.00111 * 239.99986 * 12 2 1 15 15 O 1.42099 * 106.40401 * 23.54139 * 14 12 2 16 16 O 1.42103 * 106.40122 * 156.46115 * 14 12 2 17 17 N 1.65600 * 107.21815 * 270.00257 * 14 12 2 18 18 C 1.47070 * 136.05594 * 269.62801 * 17 14 12 19 19 C 1.53753 * 87.88782 * 152.96491 * 18 17 14 20 20 N 1.46498 * 114.39398 * 272.67731 * 19 18 17 21 21 S 1.65600 * 119.99992 * 238.58511 * 20 19 18 22 22 C 1.81405 * 104.45116 * 65.00105 * 21 20 19 23 23 O 1.42099 * 104.27964 * 181.06873 * 21 20 19 24 24 O 1.42096 * 104.27701 * 308.93169 * 21 20 19 25 25 C 1.47064 * 136.05970 * 90.00128 * 17 14 12 26 26 H 1.09000 * 109.47373 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47624 * 300.00030 * 1 2 3 28 28 H 1.09001 * 109.46985 * 59.99941 * 1 2 3 29 29 H 0.96996 * 120.00238 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47060 * 270.00243 * 13 12 2 31 31 H 1.09004 * 109.47073 * 29.99732 * 13 12 2 32 32 H 1.09000 * 109.47212 * 149.99814 * 13 12 2 33 33 H 1.08999 * 113.46928 * 267.69805 * 18 17 14 34 34 H 1.09004 * 113.46787 * 38.12979 * 18 17 14 35 35 H 1.09000 * 114.09016 * 139.78185 * 19 18 17 36 36 H 0.97001 * 120.00590 * 58.58419 * 20 19 18 37 37 H 1.08999 * 109.47084 * 59.99890 * 22 21 20 38 38 H 1.08994 * 109.47448 * 180.02562 * 22 21 20 39 39 H 1.09008 * 109.46525 * 300.00294 * 22 21 20 40 40 H 1.09001 * 113.46651 * 321.86328 * 25 17 14 41 41 H 1.09000 * 113.46868 * 92.30312 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1456 -2.2878 -3.6036 10 1 1.1662 -1.5867 -4.8161 11 1 3.1467 -0.1874 -4.8164 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1142 2.2863 15 8 2.6903 1.4973 2.1193 16 8 2.8226 -0.5645 3.5260 17 7 4.5437 -0.1042 1.8181 18 6 5.6058 -1.0821 2.0982 19 6 6.1986 -0.7479 0.7194 20 7 5.6460 -1.5371 -0.3842 21 16 6.6472 -2.4670 -1.3196 22 6 7.2851 -3.7292 -0.1836 23 8 5.7822 -3.0541 -2.2822 24 8 7.6849 -1.5792 -1.7120 25 6 5.4957 0.5980 0.9444 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7089 1.1612 -3.4844 30 1 0.7375 -2.1444 1.9994 31 1 1.5295 -2.5969 0.4709 32 1 2.4628 -2.5819 1.9865 33 1 6.2510 -0.7962 2.9289 34 1 5.2423 -2.1065 2.1795 35 1 7.2868 -0.6871 0.7059 36 1 4.6936 -1.5150 -0.5670 37 1 6.4541 -4.3067 0.2216 38 1 7.9617 -4.3934 -0.7212 39 1 7.8230 -3.2455 0.6318 40 1 5.0384 1.0050 0.0425 41 1 6.1119 1.3268 1.4709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599422853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:51 Heat of formation + Delta-G solvation = -128.910213 kcal Electronic energy + Delta-G solvation = -28270.426865 eV Core-core repulsion = 24247.146268 eV Total energy + Delta-G solvation = -4023.280597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50020 -38.30351 -38.06215 -37.87595 -36.91887 -36.88670 -34.51280 -34.18164 -30.92603 -30.19713 -28.54534 -27.25445 -27.01956 -26.78685 -22.66926 -22.05231 -20.47994 -19.68029 -18.89707 -18.58403 -18.30960 -18.20399 -17.27175 -17.20611 -16.99158 -16.52277 -16.08289 -15.43975 -15.40692 -14.93518 -14.79277 -14.53907 -14.07619 -13.97245 -13.84814 -13.73380 -13.63862 -13.43139 -13.23856 -13.17697 -13.11957 -13.04535 -12.99983 -12.93858 -12.76653 -12.68506 -12.26482 -12.20182 -12.16010 -11.96203 -11.86693 -11.78081 -11.14546 -10.51973 -10.29799 -10.02658 -9.65104 -8.12173 -6.24672 -0.60138 -0.36160 1.37303 1.45494 1.61188 1.80510 2.02873 2.42869 2.59623 2.99022 3.18047 3.20986 3.32963 3.56831 3.77355 4.07901 4.11910 4.24070 4.36329 4.43359 4.66457 4.69389 4.76840 4.80251 4.80345 4.95329 4.99596 5.02313 5.06795 5.17489 5.27569 5.32574 5.59333 5.64078 5.72742 5.86677 6.06112 6.12234 6.28652 6.86231 7.45770 8.92387 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.009349 B = 0.007362 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.150622 B = 3802.296405 C = 5876.354435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.275 3.725 3 H 0.023 0.977 4 C -0.516 4.516 5 H 0.075 0.925 6 C 0.030 3.970 7 N -0.913 5.913 8 Si 0.921 3.079 9 H -0.256 1.256 10 H -0.282 1.282 11 H -0.291 1.291 12 N -0.995 5.995 13 C 0.100 3.900 14 S 2.816 3.184 15 O -1.020 7.020 16 O -1.004 7.004 17 N -1.058 6.058 18 C 0.111 3.889 19 C 0.117 3.883 20 N -1.106 6.106 21 S 2.598 3.402 22 C -0.639 4.639 23 O -1.008 7.008 24 O -0.995 6.995 25 C 0.110 3.890 26 H 0.044 0.956 27 H 0.016 0.984 28 H 0.068 0.932 29 H 0.262 0.738 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.164 0.836 36 H 0.419 0.581 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.058 0.942 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.178 -9.900 9.745 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.171 3.829 3 H 0.041 0.959 4 C -0.555 4.555 5 H 0.093 0.907 6 C -0.171 4.171 7 N -0.553 5.553 8 Si 0.748 3.252 9 H -0.179 1.179 10 H -0.208 1.208 11 H -0.218 1.218 12 N -0.837 5.837 13 C -0.046 4.046 14 S 2.828 3.172 15 O -1.004 7.004 16 O -0.988 6.988 17 N -0.901 5.901 18 C -0.015 4.015 19 C 0.006 3.994 20 N -0.864 5.864 21 S 2.696 3.304 22 C -0.794 4.794 23 O -0.999 6.999 24 O -0.985 6.985 25 C -0.017 4.017 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.181 0.819 36 H 0.255 0.745 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.183 0.817 40 H 0.076 0.924 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 14.903 -9.129 9.540 19.911 hybrid contribution -0.815 -0.282 -1.102 1.399 sum 14.088 -9.411 8.438 18.927 Atomic orbital electron populations 1.21935 0.98054 1.00057 0.99774 1.18353 0.91812 0.91311 0.81444 0.95888 1.21586 1.31080 1.12769 0.90100 0.90735 1.25422 0.95252 0.95370 1.01030 1.69989 1.37506 1.23813 1.23985 0.86041 0.78343 0.79778 0.81038 1.17901 1.20762 1.21763 1.57690 1.64723 1.22552 1.38704 1.21389 1.00440 0.80494 1.02244 1.00490 0.72207 0.72107 0.72399 1.93520 1.84639 1.35044 1.87232 1.93510 1.86445 1.76458 1.42385 1.60341 1.25266 1.41562 1.62897 1.23490 0.86544 0.93749 0.97735 1.22397 0.99720 0.91234 0.86042 1.55447 1.22746 1.61094 1.47094 1.04959 0.73500 0.76375 0.75583 1.30280 1.14583 1.17143 1.17402 1.93606 1.66246 1.79799 1.60267 1.93557 1.59336 1.63742 1.81851 1.23120 0.88881 0.96539 0.93194 0.93668 0.96467 0.91324 0.92877 0.93293 0.90436 0.90397 0.85071 0.88712 0.81863 0.74476 0.83280 0.83508 0.81687 0.92357 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.61 8.97 71.98 0.65 -5.96 16 2 C 0.28 13.20 2.62 44.24 0.12 13.31 16 3 H 0.02 1.28 6.91 -2.39 -0.02 1.26 16 4 C -0.52 -25.50 7.97 25.60 0.20 -25.30 16 5 H 0.07 3.46 6.28 -2.91 -0.02 3.44 16 6 C 0.03 1.57 5.30 84.65 0.45 2.02 16 7 N -0.91 -51.24 11.32 21.45 0.24 -50.99 16 8 Si 0.92 43.60 29.54 68.60 2.03 45.62 16 9 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 11 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 12 N -1.00 -38.99 3.12 -520.42 -1.62 -40.61 16 13 C 0.10 3.20 9.28 127.77 1.19 4.39 16 14 S 2.82 105.10 6.64 -56.49 -0.37 104.72 16 15 O -1.02 -46.94 16.70 -128.00 -2.14 -49.08 16 16 O -1.00 -38.11 17.21 -128.00 -2.20 -40.32 16 17 N -1.06 -28.73 4.29 -549.52 -2.36 -31.09 16 18 C 0.11 1.68 8.56 83.26 0.71 2.40 16 19 C 0.12 1.94 4.66 45.55 0.21 2.15 16 20 N -1.11 -25.72 5.72 -168.50 -0.96 -26.68 16 21 S 2.60 57.39 6.07 -56.49 -0.34 57.05 16 22 C -0.64 -4.85 10.89 113.37 1.23 -3.61 16 23 O -1.01 -34.04 18.08 -127.65 -2.31 -36.35 16 24 O -0.99 -27.41 17.62 -127.65 -2.25 -29.66 16 25 C 0.11 2.58 8.53 83.18 0.71 3.29 16 26 H 0.04 1.98 7.67 -2.39 -0.02 1.96 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 29 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 2.54 7.02 -2.38 -0.02 2.52 16 32 H 0.08 2.00 7.79 -2.39 -0.02 1.99 16 33 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.16 8.14 -2.38 -0.02 1.15 16 35 H 0.16 1.28 7.82 -2.39 -0.02 1.26 16 36 H 0.42 12.46 7.84 -96.75 -0.76 11.71 16 37 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.16 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -84.40 363.40 -6.53 -90.93 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.30 Total: 13.78 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 5.47 Total: -7.32 kcal Atomic # 7 Polarization: -144.68 SS G_CDS: -4.70 Total: -149.38 kcal Atomic # 8 Polarization: -146.50 SS G_CDS: -8.90 Total: -155.40 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 162.49 SS G_CDS: -0.72 Total: 161.77 kcal Total: -84.40 -6.53 -90.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599422853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.982 kcal (2) G-P(sol) polarization free energy of solvation -84.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds