Wall clock time and date at job start Sat Apr 11 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34224 * 117.00467 * 2 1 4 4 O 1.20832 * 119.99689 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00558 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47336 * 180.02562 * 5 3 2 7 7 C 1.36936 * 119.99554 * 275.87921 * 6 5 3 8 8 H 1.07997 * 119.99920 * 146.91498 * 7 6 5 9 9 C 1.38819 * 120.00342 * 326.91418 * 7 6 5 10 10 N 1.31613 * 119.99532 * 335.78671 * 9 7 6 11 11 Si 1.86797 * 120.00064 * 155.78739 * 9 7 6 12 12 H 1.48490 * 109.47310 * 90.00137 * 11 9 7 13 13 H 1.48504 * 109.46865 * 210.00261 * 11 9 7 14 14 H 1.48500 * 109.47245 * 329.99517 * 11 9 7 15 15 S 1.65597 * 120.00190 * 95.88099 * 6 5 3 16 16 O 1.42093 * 104.27610 * 333.92573 * 15 6 5 17 17 O 1.42100 * 104.27379 * 206.06951 * 15 6 5 18 18 C 1.81396 * 104.45159 * 90.00273 * 15 6 5 19 19 C 1.52994 * 109.47411 * 180.02562 * 18 15 6 20 20 H 1.09003 * 110.43267 * 307.53812 * 19 18 15 21 21 C 1.54263 * 110.49128 * 184.99460 * 19 18 15 22 22 C 1.53868 * 106.60446 * 217.71110 * 21 19 18 23 23 C 1.54265 * 106.59643 * 359.97438 * 22 21 19 24 24 F 1.39901 * 110.48710 * 142.28448 * 23 22 21 25 25 F 1.39895 * 110.49105 * 264.79903 * 23 22 21 26 26 C 1.54889 * 110.48747 * 70.22104 * 19 18 15 27 27 H 1.09001 * 109.47561 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47363 * 300.00150 * 1 2 3 29 29 H 1.09005 * 109.46756 * 60.00157 * 1 2 3 30 30 H 1.08996 * 109.47155 * 59.99795 * 5 3 2 31 31 H 1.09008 * 109.46991 * 299.99818 * 5 3 2 32 32 H 0.97004 * 119.99764 * 180.02562 * 10 9 7 33 33 H 1.09008 * 109.46907 * 299.99674 * 18 15 6 34 34 H 1.08994 * 109.47606 * 59.99341 * 18 15 6 35 35 H 1.09004 * 110.03307 * 336.99836 * 21 19 18 36 36 H 1.09004 * 110.02867 * 98.42051 * 21 19 18 37 37 H 1.08999 * 110.03419 * 119.28013 * 22 21 19 38 38 H 1.09001 * 110.03700 * 240.71745 * 22 21 19 39 39 H 1.09001 * 110.75651 * 274.93768 * 26 19 18 40 40 H 1.09001 * 110.75905 * 38.30719 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.0598 3.3709 -1.1784 8 1 3.8343 4.4268 -1.2015 9 6 4.4288 2.7144 -2.3446 10 7 5.1436 1.6112 -2.2806 11 14 3.9108 3.3969 -4.0045 12 1 4.9490 4.3361 -4.4994 13 1 3.7519 2.2806 -4.9709 14 1 2.6194 4.1163 -3.8628 15 16 4.3569 3.4317 1.4279 16 8 3.6157 2.7162 2.4066 17 8 4.1021 4.8069 1.1767 18 6 6.1351 3.1420 1.6385 19 6 6.6081 3.7958 2.9383 20 1 6.3058 4.8426 2.9697 21 6 8.1392 3.6715 3.0794 22 6 8.4243 3.4186 4.5701 23 6 7.0565 3.3987 5.2832 24 9 7.0437 2.4283 6.2908 25 9 6.7631 4.6589 5.8149 26 6 6.0504 3.0306 4.1642 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7808 0.8909 32 1 5.4018 1.1526 -3.0955 33 1 6.3259 2.0696 1.6813 34 1 6.6759 3.5738 0.7964 35 1 8.5024 2.8348 2.4826 36 1 8.6199 4.5957 2.7587 37 1 8.9258 2.4592 4.6969 38 1 9.0434 4.2201 4.9732 39 1 5.0490 3.3804 4.4150 40 1 6.0510 1.9560 3.9818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601350874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:56 Heat of formation + Delta-G solvation = -258.070315 kcal Electronic energy + Delta-G solvation = -29377.394193 eV Core-core repulsion = 24762.379656 eV Total energy + Delta-G solvation = -4615.014537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.099 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.83718 -46.96560 -39.64144 -37.75871 -36.33911 -35.87608 -35.13982 -34.66714 -31.82316 -30.95503 -28.61989 -28.51553 -26.47903 -25.17167 -24.14319 -21.13645 -20.58820 -20.33234 -18.60472 -17.60695 -17.31670 -17.01304 -16.94177 -16.52471 -16.06935 -15.73365 -15.49739 -15.33140 -14.89944 -14.76540 -14.49612 -14.10832 -13.65602 -13.53214 -13.30286 -13.03009 -13.01205 -12.89279 -12.67398 -12.05374 -11.84368 -11.73132 -11.69266 -11.62370 -11.54227 -11.30832 -11.15663 -11.10499 -10.88077 -10.82670 -10.63841 -10.60495 -10.50620 -10.38519 -10.21280 -9.79713 -9.59513 -9.39524 -8.09699 -6.77408 -4.28197 1.36331 2.99821 3.08650 3.10820 3.21579 3.35585 3.70209 3.82917 3.89220 4.11058 4.17435 4.36345 4.55946 4.91680 4.96346 5.07593 5.15541 5.22079 5.32237 5.38331 5.46185 5.48110 5.53689 5.60390 5.64333 5.78345 5.81716 5.89673 5.96323 5.97068 6.02817 6.20464 6.41986 6.51747 6.84886 7.06911 7.24116 8.10617 8.49744 8.59928 8.96561 10.20671 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.004150 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.704528 B = 6745.692901 C = 7909.854316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.446 3.554 4 O -0.494 6.494 5 C 0.132 3.868 6 N -0.798 5.798 7 C -0.240 4.240 8 H 0.113 0.887 9 C 0.033 3.967 10 N -0.835 5.835 11 Si 0.923 3.077 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.262 1.262 15 S 2.495 3.505 16 O -0.995 6.995 17 O -0.971 6.971 18 C -0.646 4.646 19 C -0.076 4.076 20 H 0.089 0.911 21 C -0.111 4.111 22 C -0.160 4.160 23 C 0.277 3.723 24 F -0.199 7.199 25 F -0.195 7.195 26 C -0.169 4.169 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.148 0.852 31 H 0.098 0.902 32 H 0.279 0.721 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.675 -3.613 4.758 7.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.286 3.714 4 O -0.379 6.379 5 C 0.003 3.997 6 N -0.621 5.621 7 C -0.386 4.386 8 H 0.131 0.869 9 C -0.179 4.179 10 N -0.474 5.474 11 Si 0.747 3.253 12 H -0.195 1.195 13 H -0.203 1.203 14 H -0.186 1.186 15 S 2.596 3.404 16 O -0.985 6.985 17 O -0.961 6.961 18 C -0.766 4.766 19 C -0.096 4.096 20 H 0.107 0.893 21 C -0.150 4.150 22 C -0.199 4.199 23 C 0.241 3.759 24 F -0.180 7.180 25 F -0.176 7.176 26 C -0.207 4.207 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.165 0.835 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.008 -2.936 5.537 7.439 hybrid contribution 0.268 -0.004 -0.743 0.790 sum 4.276 -2.940 4.794 7.065 Atomic orbital electron populations 1.23097 0.78003 1.02601 1.02131 1.86513 1.22270 1.34806 1.85109 1.25020 0.93376 0.80958 0.72031 1.90604 1.66780 1.36296 1.44248 1.20822 0.85474 0.86126 1.07299 1.53113 1.68671 1.18495 1.21808 1.19799 1.38934 0.96706 0.83126 0.86942 1.25739 0.94237 0.96810 1.01115 1.69859 1.29255 1.17695 1.30593 0.85958 0.80216 0.79018 0.80066 1.19546 1.20281 1.18644 1.12247 0.77930 0.75494 0.74693 1.93382 1.69502 1.73647 1.61936 1.93398 1.84154 1.34339 1.84213 1.31050 1.34463 1.08480 1.02641 1.21576 0.96071 0.99726 0.92221 0.89265 1.22184 0.95468 1.03413 0.93903 1.23144 0.94604 1.05143 0.96966 1.21976 0.98222 0.72387 0.83285 1.92988 1.97550 1.63221 1.64280 1.93000 1.94762 1.41780 1.88108 1.23801 0.99543 1.04073 0.93287 0.88927 0.92394 0.92433 0.83507 0.88447 0.91091 0.86551 0.85468 0.89909 0.90419 0.88547 0.89212 0.88107 0.87283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.90 10.56 -39.24 -0.41 -7.31 16 3 C 0.45 9.81 7.99 36.00 0.29 10.10 16 4 O -0.49 -12.35 16.06 -18.76 -0.30 -12.65 16 5 C 0.13 2.80 5.47 -5.19 -0.03 2.77 16 6 N -0.80 -18.46 2.32 -61.08 -0.14 -18.60 16 7 C -0.24 -5.83 8.95 -15.06 -0.13 -5.97 16 8 H 0.11 2.84 7.31 -52.49 -0.38 2.46 16 9 C 0.03 0.74 4.98 -17.43 -0.09 0.65 16 10 N -0.83 -18.56 11.27 55.49 0.63 -17.94 16 11 Si 0.92 18.30 29.62 -169.99 -5.03 13.26 16 12 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 13 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 14 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 15 S 2.49 55.23 5.17 -107.50 -0.56 54.67 16 16 O -1.00 -23.20 15.78 -57.54 -0.91 -24.11 16 17 O -0.97 -24.70 16.85 -57.54 -0.97 -25.67 16 18 C -0.65 -11.04 5.50 37.15 0.20 -10.83 16 19 C -0.08 -1.17 2.85 -88.97 -0.25 -1.42 16 20 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 21 C -0.11 -1.33 6.37 -25.62 -0.16 -1.49 16 22 C -0.16 -1.77 6.41 -25.62 -0.16 -1.94 16 23 C 0.28 3.87 2.49 -25.06 -0.06 3.81 16 24 F -0.20 -2.89 17.16 2.25 0.04 -2.86 16 25 F -0.20 -2.98 17.17 2.25 0.04 -2.94 16 26 C -0.17 -2.58 5.03 -24.72 -0.12 -2.70 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 30 H 0.15 3.12 5.31 -51.93 -0.28 2.84 16 31 H 0.10 1.80 7.57 -51.92 -0.39 1.40 16 32 H 0.28 5.78 8.31 -40.82 -0.34 5.44 16 33 H 0.12 1.79 8.02 -51.92 -0.42 1.37 16 34 H 0.13 2.15 8.14 -51.93 -0.42 1.72 16 35 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.91 8.11 -51.93 -0.42 0.49 16 38 H 0.09 0.87 8.12 -51.93 -0.42 0.44 16 39 H 0.10 1.67 7.63 -51.93 -0.40 1.28 16 40 H 0.11 1.54 7.96 -51.93 -0.41 1.12 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -30.19 354.89 -6.93 -37.12 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.20 Total: 7.08 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 0.54 Total: -5.42 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.48 Total: -36.53 kcal Atomic # 8 Polarization: -67.15 SS G_CDS: -2.59 Total: -69.74 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.08 Total: -5.80 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: 55.23 SS G_CDS: -0.56 Total: 54.67 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.19 -6.93 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601350874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.946 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds