Wall clock time and date at job start Sat Apr 11 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81397 * 102.99744 * 2 1 4 4 C 1.53005 * 109.46810 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.99486 * 53.25345 * 4 3 2 6 6 C 1.54320 * 109.88229 * 174.34175 * 4 3 2 7 7 C 1.55156 * 102.94129 * 141.61046 * 6 4 3 8 8 C 1.55121 * 101.48763 * 324.33788 * 7 6 4 9 9 N 1.47019 * 109.88644 * 292.15500 * 4 3 2 10 10 S 1.65596 * 125.64994 * 61.60423 * 9 4 3 11 11 O 1.42100 * 106.40506 * 153.32088 * 10 9 4 12 12 O 1.42102 * 106.40384 * 20.39904 * 10 9 4 13 13 C 1.76201 * 107.21945 * 266.86135 * 10 9 4 14 14 C 1.37641 * 120.13025 * 118.45742 * 13 10 9 15 15 C 1.38611 * 120.24811 * 179.69672 * 14 13 10 16 16 C 1.38657 * 120.50209 * 0.30920 * 15 14 13 17 17 C 1.37595 * 120.24748 * 359.97438 * 16 15 14 18 18 C 1.40705 * 120.12698 * 298.70827 * 13 10 9 19 19 C 1.41396 * 120.24469 * 0.02562 * 18 13 10 20 20 H 1.08002 * 119.99455 * 329.70868 * 19 18 13 21 21 C 1.39938 * 120.00056 * 149.71428 * 19 18 13 22 22 N 1.30818 * 119.99822 * 168.51865 * 21 19 18 23 23 Si 1.86800 * 119.99963 * 348.51165 * 21 19 18 24 24 H 1.48500 * 109.47086 * 89.72772 * 23 21 19 25 25 H 1.48505 * 109.47043 * 209.72502 * 23 21 19 26 26 H 1.48496 * 109.47460 * 329.72892 * 23 21 19 27 27 H 1.08995 * 109.47221 * 60.00253 * 1 2 3 28 28 H 1.09006 * 109.47333 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47469 * 299.99673 * 1 2 3 30 30 H 1.09005 * 109.47108 * 60.00400 * 3 2 1 31 31 H 1.08989 * 109.47446 * 299.99750 * 3 2 1 32 32 H 1.08997 * 110.72828 * 259.98037 * 6 4 3 33 33 H 1.09005 * 110.72168 * 23.25127 * 6 4 3 34 34 H 1.09003 * 110.99831 * 82.57956 * 7 6 4 35 35 H 1.09008 * 111.00538 * 206.42348 * 7 6 4 36 36 H 1.09001 * 110.49456 * 278.44975 * 8 7 6 37 37 H 1.09000 * 110.34235 * 156.05684 * 8 7 6 38 38 H 1.07996 * 119.87509 * 359.97438 * 14 13 10 39 39 H 1.08003 * 119.74922 * 180.27593 * 15 14 13 40 40 H 1.08000 * 119.87368 * 179.97438 * 16 15 14 41 41 H 1.08008 * 120.12555 * 180.02562 * 17 16 15 42 42 H 0.97001 * 120.00209 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.1820 1.3730 -0.8198 6 6 4.1011 3.4340 -0.1424 7 6 5.3237 3.5896 0.8001 8 6 4.9529 2.6169 1.9502 9 7 4.2974 1.4784 1.2814 10 16 4.1968 -0.0634 1.8773 11 8 5.3172 -0.2364 2.7339 12 8 3.9312 -0.9070 0.7650 13 6 2.7682 -0.1326 2.9064 14 6 1.7342 -0.9866 2.5965 15 6 0.6120 -1.0476 3.4079 16 6 0.5144 -0.2466 4.5355 17 6 1.5334 0.6186 4.8614 18 6 2.6778 0.6886 4.0453 19 6 3.7313 1.5740 4.3704 20 1 4.7480 1.3238 4.1055 21 6 3.4565 2.7742 5.0354 22 7 4.4353 3.4842 5.5347 23 14 1.6923 3.3626 5.2099 24 1 1.1101 2.8172 6.4624 25 1 1.6679 4.8467 5.2579 26 1 0.8962 2.8918 4.0481 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8031 2.2371 0.8901 31 1 1.8031 2.2371 -0.8899 32 1 4.3749 3.6682 -1.1711 33 1 3.2751 4.0626 0.1905 34 1 6.2425 3.2793 0.3024 35 1 5.4064 4.6126 1.1672 36 1 4.2646 3.0949 2.6472 37 1 5.8514 2.2852 2.4704 38 1 1.7994 -1.6147 1.7204 39 1 -0.1927 -1.7238 3.1596 40 1 -0.3648 -0.3021 5.1603 41 1 1.4555 1.2414 5.7404 42 1 4.2449 4.3164 5.9954 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601375075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:07 Heat of formation + Delta-G solvation = -38.875309 kcal Electronic energy + Delta-G solvation = -27963.732973 eV Core-core repulsion = 24355.205846 eV Total energy + Delta-G solvation = -3608.527128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.35202 -37.80342 -36.30806 -34.83254 -33.86336 -31.10333 -30.80814 -30.32626 -30.08514 -28.47307 -25.51139 -25.22515 -22.11945 -21.46023 -21.15218 -20.68266 -18.01019 -17.69400 -17.28501 -16.42949 -16.01073 -15.60793 -15.30252 -14.57360 -14.29694 -13.93585 -13.86112 -13.49099 -13.45661 -13.27011 -12.87223 -12.83511 -12.79276 -12.59955 -12.56535 -12.14221 -11.84876 -11.65594 -11.34821 -11.24847 -11.10960 -11.02584 -10.89765 -10.77050 -10.64036 -10.44802 -10.40614 -10.27696 -9.89277 -9.50308 -9.22961 -8.87681 -8.34150 -8.17257 -7.81111 -7.16564 -6.73908 -4.83093 1.50339 2.12350 2.23620 2.62013 2.93929 3.00628 3.02515 3.12339 3.75607 3.87783 4.30244 4.69305 4.81763 4.94925 5.04667 5.19560 5.37141 5.43868 5.48837 5.54453 5.57605 5.66843 5.85105 5.90789 5.96399 6.01447 6.03032 6.09842 6.16140 6.24650 6.31681 6.44479 6.51519 6.68262 6.72493 6.88073 7.02024 7.10566 7.17116 7.39467 7.50439 7.64031 7.90243 8.16399 8.37064 8.56550 9.81395 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.008505 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.597230 B = 3291.259640 C = 4296.334925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 S -0.172 6.172 3 C -0.135 4.135 4 C 0.176 3.824 5 H 0.082 0.918 6 C -0.118 4.118 7 C -0.133 4.133 8 C 0.124 3.876 9 N -1.000 6.000 10 S 2.715 3.285 11 O -0.973 6.973 12 O -0.961 6.961 13 C -0.753 4.753 14 C 0.056 3.944 15 C -0.270 4.270 16 C -0.040 4.040 17 C -0.249 4.249 18 C 0.168 3.832 19 C -0.460 4.460 20 H 0.124 0.876 21 C 0.091 3.909 22 N -0.784 5.784 23 Si 0.909 3.091 24 H -0.268 1.268 25 H -0.291 1.291 26 H -0.244 1.244 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.306 3.229 -8.965 10.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 S 0.055 5.945 3 C -0.284 4.284 4 C 0.067 3.933 5 H 0.100 0.900 6 C -0.159 4.159 7 C -0.172 4.172 8 C -0.001 4.001 9 N -0.836 5.836 10 S 2.814 3.186 11 O -0.963 6.963 12 O -0.952 6.952 13 C -0.848 4.848 14 C 0.034 3.966 15 C -0.290 4.290 16 C -0.059 4.059 17 C -0.269 4.269 18 C 0.163 3.837 19 C -0.488 4.488 20 H 0.141 0.859 21 C -0.132 4.132 22 N -0.406 5.406 23 Si 0.737 3.263 24 H -0.194 1.194 25 H -0.218 1.218 26 H -0.167 1.167 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.841 1.819 -9.035 9.644 hybrid contribution -2.558 1.671 0.759 3.148 sum -5.399 3.490 -8.276 10.480 Atomic orbital electron populations 1.23666 1.00176 1.05599 1.03835 1.89095 1.02128 1.06267 1.97016 1.24241 1.00430 0.98286 1.05451 1.20876 0.89660 0.95879 0.86844 0.90048 1.22652 0.98858 0.94170 1.00174 1.22867 0.97490 1.00068 0.96774 1.22298 0.98051 0.85673 0.94090 1.58655 1.69688 1.27065 1.28182 1.00678 0.74224 0.70706 0.72957 1.93499 1.51195 1.84120 1.67523 1.93343 1.85189 1.64058 1.52610 1.29778 1.21968 1.18405 1.14643 1.20404 0.90740 0.91884 0.93524 1.20446 1.00375 1.07675 1.00547 1.20776 0.96089 0.93979 0.95069 1.21172 0.98019 1.05557 1.02120 1.17102 0.91037 0.88304 0.87260 1.20272 0.97130 1.01146 1.30253 0.85876 1.26138 0.99623 0.96295 0.91103 1.69650 1.34595 1.12696 1.23662 0.86405 0.82578 0.76147 0.81218 1.19442 1.21833 1.16696 0.91847 0.88919 0.90802 0.88986 0.89590 0.90537 0.90609 0.91137 0.90386 0.89424 0.90166 0.86545 0.88562 0.88742 0.87848 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 10.51 101.05 1.06 -1.27 16 2 S -0.17 -2.98 12.77 -107.50 -1.37 -4.35 16 3 C -0.13 -2.03 5.44 37.16 0.20 -1.83 16 4 C 0.18 2.68 3.03 -66.95 -0.20 2.48 16 5 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 6 C -0.12 -1.43 6.47 -24.90 -0.16 -1.59 16 7 C -0.13 -1.78 7.10 -24.47 -0.17 -1.95 16 8 C 0.12 2.23 5.17 -2.42 -0.01 2.22 16 9 N -1.00 -18.76 3.33 -104.30 -0.35 -19.11 16 10 S 2.71 60.05 4.52 -107.50 -0.49 59.57 16 11 O -0.97 -24.63 15.36 -57.17 -0.88 -25.51 16 12 O -0.96 -21.19 13.07 -57.17 -0.75 -21.93 16 13 C -0.75 -17.20 5.35 -38.87 -0.21 -17.40 16 14 C 0.06 1.18 7.10 -39.66 -0.28 0.90 16 15 C -0.27 -5.40 10.05 -39.29 -0.39 -5.79 16 16 C -0.04 -0.84 10.02 -39.66 -0.40 -1.23 16 17 C -0.25 -5.72 7.04 -38.88 -0.27 -6.00 16 18 C 0.17 4.05 5.16 -106.82 -0.55 3.50 16 19 C -0.46 -11.40 6.32 -37.74 -0.24 -11.63 16 20 H 0.12 3.28 4.71 -52.49 -0.25 3.04 16 21 C 0.09 2.13 4.65 -17.35 -0.08 2.05 16 22 N -0.78 -18.52 13.93 55.55 0.77 -17.74 16 23 Si 0.91 19.01 24.38 -169.99 -4.14 14.87 16 24 H -0.27 -5.57 6.54 56.52 0.37 -5.20 16 25 H -0.29 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.24 -5.19 6.75 56.52 0.38 -4.81 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 30 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.87 7.85 -51.93 -0.41 0.47 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 36 H 0.09 1.72 5.84 -51.93 -0.30 1.42 16 37 H 0.08 1.58 7.44 -51.93 -0.39 1.19 16 38 H 0.12 2.35 5.85 -51.19 -0.30 2.05 16 39 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.10 2.34 4.18 -52.48 -0.22 2.12 16 42 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -28.35 334.72 -9.57 -37.92 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.70 Total: 8.81 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: -1.71 Total: -37.57 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.43 Total: -36.85 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -1.63 Total: -47.44 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.14 Total: 14.87 kcal Atomic # 16 Polarization: 57.07 SS G_CDS: -1.86 Total: 55.22 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.35 -9.57 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601375075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.952 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds