Wall clock time and date at job start Sat Apr 11 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81397 * 102.99744 * 2 1 4 4 C 1.53005 * 109.46810 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.99486 * 53.25345 * 4 3 2 6 6 C 1.54320 * 109.88229 * 174.34175 * 4 3 2 7 7 C 1.55156 * 102.94129 * 141.61046 * 6 4 3 8 8 C 1.55121 * 101.48763 * 324.33788 * 7 6 4 9 9 N 1.47019 * 109.88644 * 292.15500 * 4 3 2 10 10 S 1.65596 * 125.64994 * 61.60423 * 9 4 3 11 11 O 1.42100 * 106.40506 * 153.32088 * 10 9 4 12 12 O 1.42102 * 106.40384 * 20.39904 * 10 9 4 13 13 C 1.76201 * 107.21945 * 266.86135 * 10 9 4 14 14 C 1.37641 * 120.13025 * 118.45742 * 13 10 9 15 15 C 1.38611 * 120.24811 * 179.69672 * 14 13 10 16 16 C 1.38657 * 120.50209 * 0.30920 * 15 14 13 17 17 C 1.37595 * 120.24748 * 359.97438 * 16 15 14 18 18 C 1.40705 * 120.12698 * 298.70827 * 13 10 9 19 19 C 1.41396 * 120.24469 * 0.02562 * 18 13 10 20 20 H 1.08002 * 119.99455 * 329.70868 * 19 18 13 21 21 C 1.39938 * 120.00056 * 149.71428 * 19 18 13 22 22 N 1.30818 * 119.99822 * 168.51865 * 21 19 18 23 23 Si 1.86800 * 119.99963 * 348.51165 * 21 19 18 24 24 H 1.48500 * 109.47086 * 89.72772 * 23 21 19 25 25 H 1.48505 * 109.47043 * 209.72502 * 23 21 19 26 26 H 1.48496 * 109.47460 * 329.72892 * 23 21 19 27 27 H 1.08995 * 109.47221 * 60.00253 * 1 2 3 28 28 H 1.09006 * 109.47333 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47469 * 299.99673 * 1 2 3 30 30 H 1.09005 * 109.47108 * 60.00400 * 3 2 1 31 31 H 1.08989 * 109.47446 * 299.99750 * 3 2 1 32 32 H 1.08997 * 110.72828 * 259.98037 * 6 4 3 33 33 H 1.09005 * 110.72168 * 23.25127 * 6 4 3 34 34 H 1.09003 * 110.99831 * 82.57956 * 7 6 4 35 35 H 1.09008 * 111.00538 * 206.42348 * 7 6 4 36 36 H 1.09001 * 110.49456 * 278.44975 * 8 7 6 37 37 H 1.09000 * 110.34235 * 156.05684 * 8 7 6 38 38 H 1.07996 * 119.87509 * 359.97438 * 14 13 10 39 39 H 1.08003 * 119.74922 * 180.27593 * 15 14 13 40 40 H 1.08000 * 119.87368 * 179.97438 * 16 15 14 41 41 H 1.08008 * 120.12555 * 180.02562 * 17 16 15 42 42 H 0.97001 * 120.00209 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.1820 1.3730 -0.8198 6 6 4.1011 3.4340 -0.1424 7 6 5.3237 3.5896 0.8001 8 6 4.9529 2.6169 1.9502 9 7 4.2974 1.4784 1.2814 10 16 4.1968 -0.0634 1.8773 11 8 5.3172 -0.2364 2.7339 12 8 3.9312 -0.9070 0.7650 13 6 2.7682 -0.1326 2.9064 14 6 1.7342 -0.9866 2.5965 15 6 0.6120 -1.0476 3.4079 16 6 0.5144 -0.2466 4.5355 17 6 1.5334 0.6186 4.8614 18 6 2.6778 0.6886 4.0453 19 6 3.7313 1.5740 4.3704 20 1 4.7480 1.3238 4.1055 21 6 3.4565 2.7742 5.0354 22 7 4.4353 3.4842 5.5347 23 14 1.6923 3.3626 5.2099 24 1 1.1101 2.8172 6.4624 25 1 1.6679 4.8467 5.2579 26 1 0.8962 2.8918 4.0481 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8031 2.2371 0.8901 31 1 1.8031 2.2371 -0.8899 32 1 4.3749 3.6682 -1.1711 33 1 3.2751 4.0626 0.1905 34 1 6.2425 3.2793 0.3024 35 1 5.4064 4.6126 1.1672 36 1 4.2646 3.0949 2.6472 37 1 5.8514 2.2852 2.4704 38 1 1.7994 -1.6147 1.7204 39 1 -0.1927 -1.7238 3.1596 40 1 -0.3648 -0.3021 5.1603 41 1 1.4555 1.2414 5.7404 42 1 4.2449 4.3164 5.9954 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601375075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:06 Heat of formation + Delta-G solvation = -56.859783 kcal Electronic energy + Delta-G solvation = -27964.512839 eV Core-core repulsion = 24355.205846 eV Total energy + Delta-G solvation = -3609.306993 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.68791 -39.44276 -38.07708 -36.63502 -35.61387 -32.49137 -32.33465 -31.77656 -31.65637 -29.60883 -27.15067 -26.57064 -23.78002 -22.87308 -22.80639 -21.87534 -19.63102 -19.42616 -18.87361 -18.05759 -17.35553 -17.05981 -16.95641 -16.15195 -15.90424 -15.58854 -15.25112 -15.01668 -14.75554 -14.66571 -14.39146 -14.27711 -14.12038 -13.84620 -13.78074 -13.65790 -13.50053 -13.03081 -12.98755 -12.84677 -12.80826 -12.64652 -12.49838 -12.31725 -12.14291 -11.78147 -11.66010 -11.61461 -11.46192 -11.22475 -10.91028 -10.24858 -9.91474 -9.71024 -9.52708 -8.92394 -8.11107 -6.64589 -0.15537 0.47062 0.86222 1.00846 1.25170 1.35984 1.45454 1.81409 2.07136 2.30749 2.57726 3.06071 3.40042 3.56388 3.75630 3.85489 4.07549 4.24252 4.29844 4.32755 4.35759 4.45613 4.47551 4.49798 4.68468 4.72790 4.81202 4.82627 4.96509 4.98783 5.00345 5.05054 5.12907 5.26142 5.30197 5.34341 5.47791 5.53346 5.62410 5.74796 5.82583 5.93503 6.16180 6.34141 6.61010 6.76883 8.11193 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.008505 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.597230 B = 3291.259640 C = 4296.334925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.244 6.244 3 C -0.120 4.120 4 C 0.164 3.836 5 H 0.086 0.914 6 C -0.105 4.105 7 C -0.124 4.124 8 C 0.121 3.879 9 N -1.000 6.000 10 S 2.720 3.280 11 O -1.018 7.018 12 O -0.966 6.966 13 C -0.762 4.762 14 C 0.051 3.949 15 C -0.259 4.259 16 C -0.038 4.038 17 C -0.274 4.274 18 C 0.152 3.848 19 C -0.482 4.482 20 H 0.090 0.910 21 C 0.067 3.933 22 N -0.815 5.815 23 Si 0.956 3.044 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.249 1.249 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.125 0.875 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.053 4.203 -10.733 13.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S -0.016 6.016 3 C -0.269 4.269 4 C 0.057 3.943 5 H 0.104 0.896 6 C -0.145 4.145 7 C -0.163 4.163 8 C -0.004 4.004 9 N -0.837 5.837 10 S 2.820 3.180 11 O -1.009 7.009 12 O -0.956 6.956 13 C -0.857 4.857 14 C 0.030 3.970 15 C -0.279 4.279 16 C -0.056 4.056 17 C -0.293 4.293 18 C 0.147 3.853 19 C -0.510 4.510 20 H 0.108 0.892 21 C -0.152 4.152 22 N -0.439 5.439 23 Si 0.780 3.220 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.173 1.173 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.121 0.879 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.585 2.783 -10.808 12.480 hybrid contribution -1.755 1.256 1.229 2.484 sum -7.340 4.039 -9.578 12.725 Atomic orbital electron populations 1.23604 0.96647 1.06536 1.04623 1.89189 1.05958 1.09358 1.97119 1.24219 1.00150 0.96097 1.06428 1.21282 0.89893 0.98147 0.85025 0.89586 1.22694 0.98284 0.91624 1.01932 1.22860 0.98760 0.99498 0.95165 1.22240 0.96217 0.86316 0.95666 1.58400 1.69947 1.26040 1.29358 1.00212 0.73571 0.71626 0.72566 1.93440 1.53172 1.85372 1.68944 1.93363 1.85207 1.64934 1.52123 1.29939 1.22459 1.18617 1.14693 1.20616 0.90798 0.91569 0.94040 1.20867 1.00543 1.07103 0.99426 1.21180 0.96456 0.92561 0.95397 1.21300 0.98638 1.07015 1.02379 1.17272 0.91531 0.88581 0.87918 1.20096 0.96019 1.02602 1.32255 0.89169 1.26606 1.02311 0.95806 0.90510 1.69666 1.35976 1.13506 1.24703 0.85689 0.78996 0.76491 0.80786 1.19129 1.20226 1.17311 0.89415 0.87956 0.91567 0.90443 0.85910 0.86743 0.89543 0.89977 0.88567 0.91404 0.93400 0.85703 0.85082 0.85205 0.87939 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 10.51 113.37 1.19 -2.51 16 2 S -0.24 -8.05 12.77 -56.49 -0.72 -8.77 16 3 C -0.12 -3.36 5.44 71.98 0.39 -2.97 16 4 C 0.16 4.74 3.03 45.34 0.14 4.87 16 5 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 6 C -0.11 -2.21 6.47 31.78 0.21 -2.01 16 7 C -0.12 -3.14 7.10 32.06 0.23 -2.91 16 8 C 0.12 4.53 5.17 86.93 0.45 4.98 16 9 N -1.00 -38.22 3.33 -483.90 -1.61 -39.83 16 10 S 2.72 124.88 4.52 -56.49 -0.26 124.63 16 11 O -1.02 -55.18 15.36 -128.00 -1.97 -57.15 16 12 O -0.97 -43.37 13.07 -128.00 -1.67 -45.04 16 13 C -0.76 -35.34 5.35 22.73 0.12 -35.22 16 14 C 0.05 2.11 7.10 22.22 0.16 2.26 16 15 C -0.26 -9.64 10.05 22.46 0.23 -9.42 16 16 C -0.04 -1.46 10.02 22.22 0.22 -1.24 16 17 C -0.27 -12.40 7.04 22.73 0.16 -12.24 16 18 C 0.15 7.47 5.16 -21.29 -0.11 7.36 16 19 C -0.48 -25.01 6.32 23.46 0.15 -24.86 16 20 H 0.09 5.21 4.71 -2.91 -0.01 5.20 16 21 C 0.07 3.24 4.65 85.26 0.40 3.63 16 22 N -0.81 -39.92 13.93 21.82 0.30 -39.62 16 23 Si 0.96 38.93 24.38 68.60 1.67 40.61 16 24 H -0.27 -10.57 6.54 99.48 0.65 -9.92 16 25 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 26 H -0.25 -10.29 6.75 99.48 0.67 -9.62 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.12 2.51 8.14 -2.40 -0.02 2.49 16 32 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 1.68 7.85 -2.38 -0.02 1.66 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.07 2.81 5.84 -2.39 -0.01 2.79 16 37 H 0.05 2.06 7.44 -2.39 -0.02 2.04 16 38 H 0.13 4.93 5.85 -3.74 -0.02 4.91 16 39 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 40 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.10 4.59 4.18 -2.91 -0.01 4.58 16 42 H 0.30 13.06 8.30 -92.71 -0.77 12.30 16 Total: -1.00 -65.05 334.72 0.62 -64.43 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.94 Total: 31.00 kcal Atomic # 6 Polarization: -74.18 SS G_CDS: 3.93 Total: -70.25 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -1.31 Total: -79.45 kcal Atomic # 8 Polarization: -98.55 SS G_CDS: -3.64 Total: -102.19 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.67 Total: 40.61 kcal Atomic # 16 Polarization: 116.83 SS G_CDS: -0.98 Total: 115.86 kcal Total: -65.05 0.62 -64.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601375075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.575 kcal (2) G-P(sol) polarization free energy of solvation -65.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds