Wall clock time and date at job start Sat Apr 11 2020 06:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 108.68299 * 2 1 4 4 C 1.45824 * 108.62005 * 118.12876 * 2 1 3 5 5 S 1.82222 * 112.65306 * 186.04683 * 4 2 1 6 6 C 1.79953 * 103.23842 * 286.04821 * 5 4 2 7 7 C 1.54178 * 111.28330 * 83.91668 * 6 5 4 8 8 N 1.46393 * 114.74591 * 317.22444 * 7 6 5 9 9 S 1.65597 * 119.72624 * 137.38080 * 8 7 6 10 10 O 1.42097 * 106.40256 * 150.58148 * 9 8 7 11 11 O 1.42100 * 106.40101 * 17.65602 * 9 8 7 12 12 C 1.76201 * 107.21785 * 264.12176 * 9 8 7 13 13 C 1.37644 * 120.12695 * 247.72485 * 12 9 8 14 14 C 1.38610 * 120.25246 * 179.97438 * 13 12 9 15 15 C 1.38660 * 120.49804 * 359.97438 * 14 13 12 16 16 C 1.37599 * 120.24751 * 0.02562 * 15 14 13 17 17 C 1.40695 * 120.13063 * 67.70035 * 12 9 8 18 18 C 1.41396 * 120.24637 * 359.97438 * 17 12 9 19 19 H 1.08005 * 119.99082 * 27.49674 * 18 17 12 20 20 C 1.39936 * 120.00327 * 207.49343 * 18 17 12 21 21 N 1.30822 * 119.99867 * 11.22586 * 20 18 17 22 22 Si 1.86798 * 119.99997 * 191.21959 * 20 18 17 23 23 H 1.48497 * 109.47129 * 4.94993 * 22 20 18 24 24 H 1.48503 * 109.47034 * 124.94582 * 22 20 18 25 25 H 1.48499 * 109.47267 * 244.94686 * 22 20 18 26 26 C 1.44677 * 120.54669 * 317.10595 * 8 7 6 27 27 H 1.09001 * 109.47072 * 182.93593 * 1 2 3 28 28 H 1.08994 * 109.47105 * 302.93937 * 1 2 3 29 29 H 1.09005 * 109.46602 * 62.93732 * 1 2 3 30 30 H 1.09005 * 108.84511 * 306.85815 * 4 2 1 31 31 H 1.08988 * 108.84926 * 65.22506 * 4 2 1 32 32 H 1.09004 * 109.14208 * 204.41423 * 6 5 4 33 33 H 1.08993 * 109.15135 * 323.62434 * 6 5 4 34 34 H 1.09003 * 108.58342 * 195.80234 * 7 6 5 35 35 H 1.08994 * 108.40512 * 78.51616 * 7 6 5 36 36 H 1.08003 * 119.87148 * 359.97274 * 13 12 9 37 37 H 1.07992 * 119.75341 * 180.02562 * 14 13 12 38 38 H 1.08000 * 119.87603 * 180.28522 * 15 14 13 39 39 H 1.08007 * 120.12692 * 179.97438 * 16 15 14 40 40 H 0.97006 * 119.99547 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.47913 * 218.74087 * 26 8 7 42 42 H 1.08997 * 109.48192 * 338.76874 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8792 1.0326 0.0000 4 6 1.9956 -0.6515 1.2187 5 16 3.8044 -0.5571 1.4179 6 6 4.4146 -1.7405 0.2073 7 6 4.5156 -1.1058 -1.1942 8 7 3.3780 -0.2643 -1.5692 9 16 3.6424 1.1824 -2.3303 10 8 2.5045 1.4197 -3.1476 11 8 4.9681 1.1315 -2.8394 12 6 3.6337 2.4337 -1.0898 13 6 2.6205 3.3648 -1.0548 14 6 2.6108 4.3499 -0.0798 15 6 3.6187 4.4094 0.8706 16 6 4.6415 3.4891 0.8547 17 6 4.6620 2.4847 -0.1309 18 6 5.7074 1.5330 -0.1563 19 1 5.9912 1.0676 -1.0886 20 6 6.3741 1.1942 1.0265 21 7 5.8967 1.5830 2.1808 22 14 7.9456 0.1869 0.9571 23 1 8.3370 -0.0228 -0.4599 24 1 9.0297 0.9112 1.6681 25 1 7.7195 -1.1286 1.6081 26 6 2.0243 -0.6888 -1.2856 27 1 -0.3633 -1.0263 0.0526 28 1 -0.3633 0.5588 0.8624 29 1 -0.3633 0.4676 -0.9152 30 1 1.5216 -0.1740 2.0763 31 1 1.6984 -1.6998 1.1932 32 1 5.4011 -2.0888 0.5136 33 1 3.7334 -2.5902 0.1630 34 1 4.6107 -1.9036 -1.9308 35 1 5.4199 -0.4985 -1.2325 36 1 1.8302 3.3276 -1.7900 37 1 1.8117 5.0761 -0.0596 38 1 3.5987 5.1785 1.6285 39 1 5.4258 3.5375 1.5957 40 1 6.3587 1.3478 3.0007 41 1 1.3755 -0.4144 -2.1174 42 1 2.0034 -1.7701 -1.1496 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601402498.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:13 Heat of formation + Delta-G solvation = -62.253735 kcal Electronic energy + Delta-G solvation = -28271.614630 eV Core-core repulsion = 24662.073738 eV Total energy + Delta-G solvation = -3609.540892 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.33880 -38.91652 -38.14334 -36.66309 -35.75499 -35.25536 -31.84449 -31.43298 -31.16749 -28.07567 -27.24076 -26.90927 -23.54643 -23.20959 -22.75196 -21.42705 -19.65358 -19.32574 -18.70382 -17.66793 -17.54788 -16.96401 -16.91043 -16.13568 -15.96395 -15.52576 -15.26198 -14.93852 -14.84939 -14.60215 -14.40474 -14.35768 -13.77212 -13.63203 -13.45793 -13.12987 -13.00578 -12.98345 -12.89066 -12.80098 -12.70473 -12.64151 -12.49981 -12.18416 -12.10226 -11.91808 -11.63649 -11.50499 -11.43564 -11.10157 -10.81473 -10.09551 -9.78666 -9.54472 -9.19990 -8.56693 -7.98396 -6.33882 -0.11738 0.72388 1.11903 1.18760 1.41613 1.50862 1.53637 2.02558 2.22095 2.35361 2.82277 3.08137 3.62750 3.70606 3.79854 3.96216 4.03872 4.19066 4.33864 4.42566 4.43764 4.61716 4.61838 4.66023 4.72758 4.80200 4.82372 4.87002 4.90010 4.98249 5.13090 5.19046 5.26876 5.37457 5.41555 5.47167 5.53183 5.73098 5.85724 5.98193 6.06214 6.17900 6.33327 6.71358 6.92611 7.05517 8.35609 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.008340 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.248620 B = 3356.611522 C = 3873.420866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 H 0.063 0.937 4 C -0.072 4.072 5 S -0.228 6.228 6 C -0.100 4.100 7 C 0.112 3.888 8 N -0.974 5.974 9 S 2.712 3.288 10 O -1.010 7.010 11 O -1.003 7.003 12 C -0.787 4.787 13 C -0.012 4.012 14 C -0.260 4.260 15 C -0.084 4.084 16 C -0.178 4.178 17 C 0.190 3.810 18 C -0.467 4.467 19 H 0.101 0.899 20 C 0.077 3.923 21 N -0.759 5.759 22 Si 0.922 3.078 23 H -0.259 1.259 24 H -0.269 1.269 25 H -0.250 1.250 26 C 0.119 3.881 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.287 0.713 41 H 0.086 0.914 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.470 -8.963 1.132 10.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 H 0.081 0.919 4 C -0.220 4.220 5 S 0.001 5.999 6 C -0.250 4.250 7 C -0.016 4.016 8 N -0.809 5.809 9 S 2.811 3.189 10 O -1.001 7.001 11 O -0.994 6.994 12 C -0.882 4.882 13 C -0.032 4.032 14 C -0.280 4.280 15 C -0.103 4.103 16 C -0.198 4.198 17 C 0.186 3.814 18 C -0.494 4.494 19 H 0.118 0.882 20 C -0.145 4.145 21 N -0.381 5.381 22 Si 0.744 3.256 23 H -0.183 1.183 24 H -0.194 1.194 25 H -0.174 1.174 26 C -0.007 4.007 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.684 -8.339 1.198 9.639 hybrid contribution 0.092 -0.337 0.228 0.417 sum -4.592 -8.676 1.425 9.919 Atomic orbital electron populations 1.21842 0.92663 1.03046 1.02157 1.20806 0.97640 1.01381 0.95052 0.91863 1.22156 0.95228 1.04036 1.00552 1.88247 1.04926 1.58273 1.48428 1.23729 1.05609 0.99794 0.95902 1.21746 0.88714 0.95332 0.95762 1.56711 1.11989 1.35689 1.76498 1.00609 0.71520 0.73101 0.73713 1.93392 1.53065 1.86040 1.67572 1.93420 1.39105 1.87147 1.79691 1.29848 1.08211 1.22932 1.27194 1.20364 0.94382 0.92805 0.95606 1.20680 1.02809 1.03856 1.00662 1.21113 0.94569 0.97488 0.97084 1.21565 1.00096 0.96116 1.02007 1.16979 0.88023 0.89074 0.87373 1.20385 1.13500 1.19354 0.96171 0.88170 1.26067 0.98631 0.95616 0.94211 1.69780 1.35241 1.34058 0.99017 0.86018 0.79373 0.80046 0.80153 1.18265 1.19398 1.17396 1.21447 0.81153 1.01419 0.96667 0.90326 0.92521 0.92417 0.89161 0.88820 0.87430 0.87803 0.89800 0.89952 0.87191 0.86800 0.87234 0.86802 0.90161 0.89558 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.94 71.98 0.64 -2.51 16 2 C -0.13 -3.73 2.36 -12.65 -0.03 -3.76 16 3 H 0.06 2.39 5.73 -2.39 -0.01 2.38 16 4 C -0.07 -2.02 4.99 69.78 0.35 -1.67 16 5 S -0.23 -7.99 18.05 -56.49 -1.02 -9.01 16 6 C -0.10 -2.85 5.90 72.38 0.43 -2.42 16 7 C 0.11 3.61 5.32 86.80 0.46 4.08 16 8 N -0.97 -34.08 2.67 -516.26 -1.38 -35.47 16 9 S 2.71 118.78 4.98 -56.49 -0.28 118.50 16 10 O -1.01 -45.61 15.74 -128.00 -2.01 -47.63 16 11 O -1.00 -49.04 14.42 -128.00 -1.85 -50.88 16 12 C -0.79 -36.90 4.51 22.73 0.10 -36.80 16 13 C -0.01 -0.53 8.95 22.22 0.20 -0.33 16 14 C -0.26 -11.17 10.05 22.46 0.23 -10.95 16 15 C -0.08 -3.72 10.02 22.22 0.22 -3.50 16 16 C -0.18 -8.68 8.67 22.73 0.20 -8.49 16 17 C 0.19 9.35 5.56 -21.29 -0.12 9.23 16 18 C -0.47 -22.22 5.66 23.46 0.13 -22.09 16 19 H 0.10 4.95 3.63 -2.91 -0.01 4.94 16 20 C 0.08 3.38 3.83 85.25 0.33 3.71 16 21 N -0.76 -33.72 9.82 21.82 0.21 -33.51 16 22 Si 0.92 34.37 29.57 68.60 2.03 36.40 16 23 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 24 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 25 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 26 C 0.12 3.38 4.88 87.06 0.42 3.81 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16 29 H 0.06 1.36 8.00 -2.38 -0.02 1.34 16 30 H 0.09 2.59 8.05 -2.39 -0.02 2.57 16 31 H 0.09 2.06 8.11 -2.40 -0.02 2.04 16 32 H 0.11 2.94 8.14 -2.47 -0.02 2.92 16 33 H 0.10 2.25 7.90 -2.47 -0.02 2.23 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.08 3.17 4.20 -2.39 -0.01 3.16 16 36 H 0.11 4.63 7.32 -2.91 -0.02 4.61 16 37 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 39 H 0.11 5.69 6.14 -2.91 -0.02 5.67 16 40 H 0.29 11.82 8.30 -92.70 -0.77 11.05 16 41 H 0.09 2.46 6.92 -2.39 -0.02 2.45 16 42 H 0.11 2.30 7.52 -2.39 -0.02 2.28 16 Total: -1.00 -59.03 336.71 0.31 -58.72 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 1.04 Total: 34.56 kcal Atomic # 6 Polarization: -75.25 SS G_CDS: 3.56 Total: -71.69 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.17 Total: -68.97 kcal Atomic # 8 Polarization: -94.65 SS G_CDS: -3.86 Total: -98.51 kcal Atomic # 14 Polarization: 34.37 SS G_CDS: 2.03 Total: 36.40 kcal Atomic # 16 Polarization: 110.79 SS G_CDS: -1.30 Total: 109.49 kcal Total: -59.03 0.31 -58.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601402498.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.530 kcal (2) G-P(sol) polarization free energy of solvation -59.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds