Wall clock time and date at job start Sat Apr 11 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 108.75775 * 2 1 4 4 C 1.53484 * 108.78838 * 241.65329 * 2 1 3 5 5 S 1.78694 * 107.07305 * 156.89191 * 4 2 1 6 6 C 1.83139 * 105.76853 * 92.56025 * 5 4 2 7 7 C 1.56687 * 108.04510 * 321.71825 * 6 5 4 8 8 N 1.42788 * 113.65671 * 321.09172 * 7 6 5 9 9 S 1.65596 * 121.56800 * 284.08515 * 8 7 6 10 10 O 1.42105 * 106.40177 * 31.21041 * 9 8 7 11 11 O 1.42092 * 106.40438 * 164.13261 * 9 8 7 12 12 C 1.76203 * 107.21749 * 277.67761 * 9 8 7 13 13 C 1.37634 * 120.13354 * 115.26364 * 12 9 8 14 14 C 1.38603 * 120.25324 * 180.02562 * 13 12 9 15 15 C 1.38658 * 120.50047 * 359.97438 * 14 13 12 16 16 C 1.37606 * 120.24861 * 0.02562 * 15 14 13 17 17 C 1.40701 * 120.12194 * 294.99051 * 12 9 8 18 18 C 1.41390 * 120.24736 * 359.97438 * 17 12 9 19 19 H 1.08001 * 119.99948 * 327.43299 * 18 17 12 20 20 C 1.39945 * 119.99975 * 147.43333 * 18 17 12 21 21 N 1.30815 * 120.00361 * 350.55275 * 20 18 17 22 22 Si 1.86807 * 119.99819 * 170.54874 * 20 18 17 23 23 H 1.48497 * 109.47220 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46699 * 120.00097 * 22 20 18 25 25 H 1.48493 * 109.47325 * 239.99942 * 22 20 18 26 26 C 1.44337 * 108.78777 * 118.23691 * 2 1 3 27 27 H 1.08996 * 109.47110 * 178.34450 * 1 2 3 28 28 H 1.09005 * 109.46655 * 58.34201 * 1 2 3 29 29 H 1.09003 * 109.47138 * 298.34663 * 1 2 3 30 30 H 1.09001 * 109.93771 * 276.28407 * 4 2 1 31 31 H 1.09007 * 109.93331 * 37.50304 * 4 2 1 32 32 H 1.08997 * 109.75116 * 81.36446 * 6 5 4 33 33 H 1.09002 * 109.74052 * 202.03871 * 6 5 4 34 34 H 1.08999 * 108.64739 * 82.16700 * 7 6 5 35 35 H 1.08997 * 108.65273 * 200.00861 * 7 6 5 36 36 H 1.08008 * 119.86995 * 0.02562 * 13 12 9 37 37 H 1.07998 * 119.75299 * 179.97438 * 14 13 12 38 38 H 1.07996 * 119.87849 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.12680 * 179.97438 * 16 15 14 40 40 H 0.96997 * 120.00473 * 180.02562 * 21 20 18 41 41 H 1.08999 * 109.08837 * 300.76385 * 26 2 1 42 42 H 1.08997 * 109.09303 * 59.77530 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8805 1.0321 0.0000 4 6 2.0243 -0.6899 -1.2788 5 16 3.6807 -0.0955 -1.5889 6 6 4.8004 -1.2945 -0.7749 7 6 4.1397 -1.7359 0.5756 8 7 3.4834 -0.6727 1.2667 9 16 4.3363 0.4774 2.0985 10 8 5.5724 0.6329 1.4149 11 8 3.4372 1.5524 2.3329 12 6 4.7233 -0.2010 3.6780 13 6 6.0340 -0.4330 4.0280 14 6 6.3413 -0.9670 5.2695 15 6 5.3346 -1.2731 6.1727 16 6 4.0172 -1.0495 5.8442 17 6 3.6939 -0.5023 4.5886 18 6 2.3441 -0.2624 4.2425 19 1 2.0909 0.5671 3.5988 20 6 1.3363 -1.0996 4.7341 21 7 1.6510 -2.2058 5.3574 22 14 -0.4586 -0.6376 4.5002 23 1 -0.5465 0.6517 3.7687 24 1 -1.1447 -1.6976 3.7185 25 1 -1.1112 -0.5000 5.8269 26 6 1.9949 -0.6465 1.2039 27 1 -0.3633 -1.0272 -0.0297 28 1 -0.3633 0.5394 -0.8748 29 1 -0.3633 0.4880 0.9045 30 1 2.0379 -1.7705 -1.1367 31 1 1.3744 -0.4322 -2.1151 32 1 4.9399 -2.1634 -1.4180 33 1 5.7636 -0.8238 -0.5780 34 1 3.4104 -2.5188 0.3674 35 1 4.9132 -2.1478 1.2238 36 1 6.8262 -0.1980 3.3324 37 1 7.3725 -1.1462 5.5356 38 1 5.5854 -1.6884 7.1375 39 1 3.2347 -1.2890 6.5490 40 1 0.9525 -2.7864 5.6978 41 1 1.6109 -0.1067 2.0694 42 1 1.6188 -1.6693 1.2273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601402499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:16 Heat of formation + Delta-G solvation = -54.134258 kcal Electronic energy + Delta-G solvation = -27503.272520 eV Core-core repulsion = 23894.083714 eV Total energy + Delta-G solvation = -3609.188805 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.18217 -37.63489 -36.36556 -34.83739 -34.28292 -33.92526 -30.35117 -29.87685 -29.60990 -27.32950 -25.94526 -25.33574 -22.73012 -21.68600 -21.19268 -20.39478 -18.11815 -17.64215 -17.10658 -16.35361 -16.07095 -15.91885 -15.41405 -14.78503 -14.43090 -14.26299 -13.94669 -13.77924 -13.40311 -13.25679 -13.00219 -12.82336 -12.78808 -12.40296 -12.05719 -11.99246 -11.78908 -11.65577 -11.33460 -11.30710 -11.23343 -11.12115 -11.05359 -10.86819 -10.67121 -10.58168 -10.47152 -10.14735 -9.91026 -9.56194 -9.50909 -9.25389 -8.54792 -8.07896 -7.62313 -7.36151 -7.09558 -4.84702 1.46105 1.92035 2.28026 2.64512 2.89073 2.90456 2.97792 3.00287 3.69577 3.81791 4.33224 4.68807 4.79967 4.91922 4.97694 5.09946 5.23260 5.27175 5.47620 5.52536 5.62595 5.67034 5.74246 5.82427 5.89874 5.97693 6.01323 6.17376 6.18520 6.24376 6.31928 6.38494 6.54232 6.60987 6.74075 6.90548 6.98400 7.20082 7.28589 7.45843 7.63931 7.74195 7.88379 8.28424 8.46114 8.59142 9.84789 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.007310 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.363394 B = 3829.358474 C = 5620.156285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.083 4.083 5 S -0.266 6.266 6 C -0.103 4.103 7 C 0.126 3.874 8 N -0.979 5.979 9 S 2.713 3.287 10 O -0.988 6.988 11 O -0.969 6.969 12 C -0.776 4.776 13 C -0.006 4.006 14 C -0.244 4.244 15 C -0.077 4.077 16 C -0.154 4.154 17 C 0.195 3.805 18 C -0.481 4.481 19 H 0.116 0.884 20 C 0.082 3.918 21 N -0.781 5.781 22 Si 0.895 3.105 23 H -0.247 1.247 24 H -0.267 1.267 25 H -0.267 1.267 26 C 0.124 3.876 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.286 0.714 41 H 0.111 0.889 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -2.778 -7.806 8.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 H 0.109 0.891 4 C -0.231 4.231 5 S -0.039 6.039 6 C -0.254 4.254 7 C -0.004 4.004 8 N -0.811 5.811 9 S 2.811 3.189 10 O -0.978 6.978 11 O -0.960 6.960 12 C -0.870 4.870 13 C -0.026 4.026 14 C -0.265 4.265 15 C -0.096 4.096 16 C -0.174 4.174 17 C 0.190 3.810 18 C -0.510 4.510 19 H 0.133 0.867 20 C -0.138 4.138 21 N -0.405 5.405 22 Si 0.718 3.282 23 H -0.170 1.170 24 H -0.191 1.191 25 H -0.192 1.192 26 C 0.000 4.000 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.191 -1.284 -8.606 8.973 hybrid contribution -1.032 -1.820 1.332 2.480 sum -3.223 -3.104 -7.274 8.540 Atomic orbital electron populations 1.21885 0.94217 1.01945 1.02461 1.20483 0.96330 1.02203 0.94578 0.89126 1.23289 0.95634 1.02981 1.01221 1.86233 1.02591 1.42669 1.72369 1.25187 1.01437 1.00255 0.98475 1.21004 0.97585 0.89891 0.91932 1.57265 1.14976 1.44316 1.64524 1.00898 0.71896 0.72760 0.73350 1.93429 1.44629 1.85583 1.74189 1.93460 1.65056 1.51190 1.86285 1.30043 1.00621 1.34618 1.21768 1.20269 0.93860 0.92844 0.95659 1.20527 0.97393 1.11917 0.96641 1.20932 0.93902 0.97376 0.97412 1.21495 0.94698 1.03922 0.97280 1.17029 0.91072 0.83823 0.89051 1.20463 0.90763 1.12311 1.27443 0.86665 1.25942 1.02002 0.93571 0.92303 1.69779 1.36313 1.08376 1.26029 0.86418 0.80937 0.80822 0.80002 1.17011 1.19136 1.19223 1.20406 0.78470 1.02226 0.98898 0.92546 0.92316 0.91809 0.89744 0.88001 0.89311 0.86431 0.90490 0.90494 0.87366 0.88610 0.88738 0.86008 0.90324 0.87094 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.94 37.16 0.33 -1.44 16 2 C -0.11 -1.67 2.32 -94.40 -0.22 -1.89 16 3 H 0.09 1.52 7.79 -51.93 -0.40 1.12 16 4 C -0.08 -1.06 5.35 37.41 0.20 -0.86 16 5 S -0.27 -4.09 20.99 -107.50 -2.26 -6.34 16 6 C -0.10 -1.47 6.70 39.15 0.26 -1.21 16 7 C 0.13 1.94 5.11 -4.01 -0.02 1.92 16 8 N -0.98 -17.88 2.34 -117.31 -0.27 -18.16 16 9 S 2.71 59.63 5.11 -107.50 -0.55 59.08 16 10 O -0.99 -22.20 15.19 -57.17 -0.87 -23.07 16 11 O -0.97 -23.42 14.78 -57.17 -0.85 -24.27 16 12 C -0.78 -18.38 5.96 -38.87 -0.23 -18.61 16 13 C -0.01 -0.14 9.53 -39.67 -0.38 -0.52 16 14 C -0.24 -5.27 10.05 -39.29 -0.39 -5.66 16 15 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 16 C -0.15 -3.73 8.64 -38.87 -0.34 -4.07 16 17 C 0.19 4.84 5.51 -106.83 -0.59 4.25 16 18 C -0.48 -11.50 6.35 -37.74 -0.24 -11.74 16 19 H 0.12 2.79 4.05 -52.49 -0.21 2.57 16 20 C 0.08 1.83 5.26 -17.35 -0.09 1.74 16 21 N -0.78 -17.80 11.02 55.55 0.61 -17.19 16 22 Si 0.90 16.65 29.28 -169.99 -4.98 11.68 16 23 H -0.25 -4.57 7.11 56.52 0.40 -4.16 16 24 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 25 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 26 C 0.12 2.09 3.87 -6.68 -0.03 2.07 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 29 H 0.06 0.83 8.12 -51.93 -0.42 0.40 16 30 H 0.08 0.98 7.16 -51.79 -0.37 0.61 16 31 H 0.10 1.12 7.93 -51.78 -0.41 0.71 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.12 1.84 7.32 -51.93 -0.38 1.46 16 34 H 0.08 1.01 6.83 -51.93 -0.35 0.65 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.11 2.25 7.33 -52.48 -0.38 1.86 16 37 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.12 2.97 6.45 -52.49 -0.34 2.63 16 40 H 0.29 5.89 8.30 -40.82 -0.34 5.55 16 41 H 0.11 2.12 4.16 -51.93 -0.22 1.90 16 42 H 0.07 1.05 7.72 -51.93 -0.40 0.65 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -27.98 345.45 -11.64 -39.62 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.56 Total: 11.57 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: -2.13 Total: -38.13 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.34 Total: -35.35 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -1.71 Total: -47.33 kcal Atomic # 14 Polarization: 16.65 SS G_CDS: -4.98 Total: 11.68 kcal Atomic # 16 Polarization: 55.54 SS G_CDS: -2.81 Total: 52.74 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.98 -11.64 -39.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601402499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.511 kcal (2) G-P(sol) polarization free energy of solvation -27.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds