Wall clock time and date at job start Sat Apr 11 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47123 * 2 1 4 4 C 1.50693 * 109.46944 * 240.00394 * 2 1 3 5 5 O 1.21296 * 119.99926 * 264.99619 * 4 2 1 6 6 N 1.34781 * 120.00497 * 85.00075 * 4 2 1 7 7 C 1.37091 * 120.00295 * 179.97438 * 6 4 2 8 8 H 1.08008 * 119.99565 * 131.71511 * 7 6 4 9 9 C 1.38945 * 120.00684 * 311.72140 * 7 6 4 10 10 N 1.31405 * 120.00838 * 166.36172 * 9 7 6 11 11 Si 1.86808 * 119.99622 * 346.35825 * 9 7 6 12 12 H 1.48503 * 109.46733 * 93.68031 * 11 9 7 13 13 H 1.48496 * 109.47269 * 213.67798 * 11 9 7 14 14 H 1.48498 * 109.46982 * 333.68105 * 11 9 7 15 15 C 1.46498 * 119.99458 * 359.97438 * 6 4 2 16 16 C 1.53008 * 117.49687 * 190.51785 * 15 6 4 17 17 C 1.52998 * 117.50085 * 121.85965 * 15 6 4 18 18 S 1.81395 * 109.46929 * 120.00071 * 2 1 3 19 19 O 1.42104 * 110.54455 * 56.62858 * 18 2 1 20 20 O 1.42104 * 110.54260 * 193.37615 * 18 2 1 21 21 C 1.76195 * 104.45188 * 304.99861 * 18 2 1 22 22 C 1.38241 * 119.97796 * 269.72470 * 21 18 2 23 23 C 1.38199 * 120.02486 * 179.72331 * 22 21 18 24 24 C 1.38454 * 119.97614 * 0.57247 * 23 22 21 25 25 F 1.35098 * 120.02811 * 179.67576 * 24 23 22 26 26 C 1.38460 * 119.94630 * 359.70596 * 24 23 22 27 27 C 1.38200 * 119.97617 * 359.97438 * 26 24 23 28 28 H 1.08993 * 109.46944 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47257 * 299.99958 * 1 2 3 30 30 H 1.09003 * 109.47126 * 59.99502 * 1 2 3 31 31 H 0.97002 * 120.00874 * 180.02562 * 10 9 7 32 32 H 1.08999 * 115.55289 * 336.18208 * 15 6 4 33 33 H 1.09000 * 117.49845 * 359.97438 * 16 15 6 34 34 H 1.09003 * 117.49659 * 145.02029 * 16 15 6 35 35 H 1.09000 * 117.49959 * 214.97734 * 17 15 6 36 36 H 1.09008 * 117.50099 * 359.97168 * 17 15 6 37 37 H 1.08007 * 119.98360 * 359.97438 * 22 21 18 38 38 H 1.08001 * 120.00843 * 180.25862 * 23 22 21 39 39 H 1.08001 * 120.00946 * 179.97438 * 26 24 23 40 40 H 1.08003 * 119.98604 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.3208 -1.8872 -1.1761 6 7 2.1611 -0.0379 -2.3915 7 6 2.6185 -0.6840 -3.5107 8 1 2.0917 -0.5794 -4.4478 9 6 3.7597 -1.4735 -3.4397 10 7 4.0498 -2.2989 -4.4201 11 14 4.8817 -1.3614 -1.9503 12 1 4.4972 -2.4007 -0.9617 13 1 6.2887 -1.5769 -2.3732 14 1 4.7508 -0.0176 -1.3321 15 6 1.8122 1.3834 -2.4573 16 6 1.7419 2.0301 -3.8422 17 6 2.9038 2.3590 -2.9014 18 16 2.1346 -0.8551 1.4811 19 8 1.6108 -2.1746 1.5439 20 8 3.5214 -0.6079 1.6685 21 6 1.3586 -0.0151 2.8214 22 6 1.9818 1.0690 3.4109 23 6 1.3713 1.7321 4.4585 24 6 0.1405 1.3030 4.9255 25 9 -0.4542 1.9465 5.9538 26 6 -0.4801 0.2136 4.3381 27 6 0.1292 -0.4439 3.2862 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.8463 -2.8504 -4.3704 32 1 1.1043 1.7291 -1.7039 33 1 1.9557 1.3982 -4.7042 34 1 0.9881 2.8016 -3.9996 35 1 2.9140 3.3467 -2.4405 36 1 3.8819 1.9434 -3.1443 37 1 2.9443 1.4003 3.0499 38 1 1.8565 2.5816 4.9161 39 1 -1.4400 -0.1222 4.7018 40 1 -0.3545 -1.2940 2.8282 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604518043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:42 Heat of formation + Delta-G solvation = -96.283294 kcal Electronic energy + Delta-G solvation = -28481.996595 eV Core-core repulsion = 24304.766894 eV Total energy + Delta-G solvation = -4177.229701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.14987 -41.25406 -40.09497 -38.40125 -38.20574 -37.11656 -35.17821 -34.57928 -33.28692 -32.35756 -31.87878 -27.56307 -25.59448 -24.35176 -24.26914 -23.34999 -23.03613 -21.62942 -20.28114 -19.31552 -19.07651 -18.45394 -18.02451 -17.88178 -17.59206 -17.11794 -16.78713 -16.57379 -16.01550 -15.85855 -15.70772 -15.32462 -15.11632 -14.73621 -14.70393 -14.47365 -14.44211 -14.13356 -13.93443 -13.63218 -13.41808 -13.28106 -13.23703 -13.08922 -12.81533 -12.53826 -12.26712 -12.25925 -12.11734 -12.10188 -11.78118 -11.61188 -11.28540 -10.96094 -10.71504 -10.31227 -10.28429 -9.45622 -8.55015 -6.36582 -1.24415 -0.50283 0.04559 1.05452 1.19310 1.37941 1.57023 1.75999 2.08247 2.23322 2.36402 2.79177 2.86762 2.94308 2.98297 3.19096 3.33233 3.51017 3.69780 3.77645 3.87520 4.06402 4.08144 4.16399 4.17652 4.28718 4.51322 4.58202 4.61026 4.75904 4.83796 4.90454 4.91617 4.92158 4.96941 5.11200 5.24885 5.48414 5.59152 5.62274 5.77799 6.51765 6.71674 7.14402 7.60140 8.53545 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.004182 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.859815 B = 6693.759178 C = 7300.621909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.585 4.585 3 H 0.191 0.809 4 C 0.464 3.536 5 O -0.589 6.589 6 N -0.430 5.430 7 C -0.331 4.331 8 H 0.085 0.915 9 C 0.057 3.943 10 N -0.901 5.901 11 Si 0.908 3.092 12 H -0.287 1.287 13 H -0.288 1.288 14 H -0.246 1.246 15 C 0.028 3.972 16 C -0.162 4.162 17 C -0.189 4.189 18 S 2.495 3.505 19 O -0.955 6.955 20 O -0.975 6.975 21 C -0.666 4.666 22 C -0.001 4.001 23 C -0.165 4.165 24 C 0.151 3.849 25 F -0.130 7.130 26 C -0.165 4.165 27 C 0.002 3.998 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.275 0.725 32 H 0.166 0.834 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.065 0.935 37 H 0.161 0.839 38 H 0.174 0.826 39 H 0.175 0.825 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 16.422 17.239 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.697 4.697 3 H 0.208 0.792 4 C 0.253 3.747 5 O -0.474 6.474 6 N -0.149 5.149 7 C -0.458 4.458 8 H 0.102 0.898 9 C -0.149 4.149 10 N -0.539 5.539 11 Si 0.736 3.264 12 H -0.214 1.214 13 H -0.215 1.215 14 H -0.169 1.169 15 C -0.075 4.075 16 C -0.200 4.200 17 C -0.227 4.227 18 S 2.680 3.320 19 O -0.952 6.952 20 O -0.973 6.973 21 C -0.757 4.757 22 C -0.020 4.020 23 C -0.185 4.185 24 C 0.132 3.868 25 F -0.108 7.108 26 C -0.184 4.184 27 C -0.017 4.017 28 H 0.088 0.912 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.183 0.817 33 H 0.094 0.906 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.179 0.821 38 H 0.191 0.809 39 H 0.192 0.808 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.667 15.046 17.224 25.235 hybrid contribution 0.628 -0.167 0.254 0.698 sum -10.039 14.879 17.477 25.053 Atomic orbital electron populations 1.21786 0.84611 1.05291 1.07478 1.30418 1.11565 1.15741 1.12009 0.79221 1.19973 0.81971 0.86610 0.86123 1.90714 1.54215 1.17592 1.84926 1.43145 1.56330 1.07886 1.07505 1.18701 1.08927 1.28638 0.89563 0.89788 1.25765 0.97788 0.93882 0.97447 1.69732 1.27097 1.22564 1.34461 0.86355 0.77904 0.80437 0.81717 1.21394 1.21534 1.16924 1.22552 1.03215 0.79909 1.01839 1.23198 1.01416 1.02417 0.92935 1.23386 0.94160 1.00552 1.04633 1.05168 0.74627 0.75619 0.76613 1.93487 1.80489 1.34984 1.86241 1.93487 1.31814 1.86330 1.85628 1.30115 1.09896 1.14074 1.21623 1.21065 0.98588 0.89837 0.92478 1.21514 0.94797 1.03342 0.98835 1.18145 0.91968 0.91585 0.85128 1.91559 1.83233 1.80248 1.55761 1.21525 1.03180 0.95947 0.97776 1.21075 0.90716 0.96644 0.93307 0.91153 0.86284 0.87684 0.91493 0.81673 0.90567 0.84746 0.84521 0.91627 0.82147 0.80854 0.80786 0.82077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.69 71.98 0.63 -2.23 16 2 C -0.58 -18.12 2.43 29.85 0.07 -18.04 16 3 H 0.19 4.14 6.83 -2.39 -0.02 4.12 16 4 C 0.46 21.39 4.95 87.65 0.43 21.83 16 5 O -0.59 -33.86 11.69 6.03 0.07 -33.79 16 6 N -0.43 -19.45 2.43 -613.13 -1.49 -20.94 16 7 C -0.33 -18.36 8.48 84.04 0.71 -17.64 16 8 H 0.08 4.88 7.10 -2.91 -0.02 4.86 16 9 C 0.06 3.43 4.99 84.93 0.42 3.85 16 10 N -0.90 -56.79 13.96 21.66 0.30 -56.49 16 11 Si 0.91 51.29 24.79 68.60 1.70 52.99 16 12 H -0.29 -17.83 6.46 99.48 0.64 -17.19 16 13 H -0.29 -15.56 7.11 99.48 0.71 -14.86 16 14 H -0.25 -12.70 7.11 99.48 0.71 -11.99 16 15 C 0.03 0.88 5.64 44.99 0.25 1.14 16 16 C -0.16 -4.62 9.85 30.62 0.30 -4.32 16 17 C -0.19 -5.42 10.24 30.62 0.31 -5.11 16 18 S 2.50 88.50 4.18 -56.49 -0.24 88.26 16 19 O -0.95 -40.67 16.55 -122.77 -2.03 -42.70 16 20 O -0.98 -40.86 17.12 -127.65 -2.18 -43.04 16 21 C -0.67 -15.21 4.88 22.27 0.11 -15.10 16 22 C 0.00 -0.01 9.47 22.26 0.21 0.20 16 23 C -0.17 -2.28 10.03 22.31 0.22 -2.06 16 24 C 0.15 2.17 7.30 22.37 0.16 2.33 16 25 F -0.13 -1.88 17.27 44.97 0.78 -1.11 16 26 C -0.16 -2.26 10.03 22.31 0.22 -2.04 16 27 C 0.00 0.03 8.45 22.26 0.19 0.22 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.12 1.44 6.58 -2.38 -0.02 1.43 16 30 H 0.10 1.90 7.11 -2.39 -0.02 1.88 16 31 H 0.28 16.52 8.31 -92.71 -0.77 15.75 16 32 H 0.17 3.42 5.65 -2.39 -0.01 3.41 16 33 H 0.08 2.76 6.58 -2.39 -0.02 2.74 16 34 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.16 2.65 7.56 -2.91 -0.02 2.63 16 38 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.16 2.71 7.57 -2.91 -0.02 2.69 16 Total: -1.00 -88.49 346.01 2.18 -86.31 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.02 Total: 7.49 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 4.25 Total: -36.98 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -1.19 Total: -77.42 kcal Atomic # 8 Polarization: -115.39 SS G_CDS: -4.15 Total: -119.54 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.78 Total: -1.11 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 1.70 Total: 52.99 kcal Atomic # 16 Polarization: 88.50 SS G_CDS: -0.24 Total: 88.26 kcal Total: -88.49 2.18 -86.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604518043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.974 kcal (2) G-P(sol) polarization free energy of solvation -88.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds