Wall clock time and date at job start Sat Apr 11 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00050 * 2 1 4 4 C 1.52999 * 109.47333 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46861 * 65.00008 * 4 3 2 6 6 C 1.46496 * 120.00164 * 269.99910 * 5 4 3 7 7 C 1.50702 * 109.46970 * 95.77420 * 6 5 4 8 8 H 1.07999 * 120.00179 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00137 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00145 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99756 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46949 * 90.00090 * 11 9 7 13 13 H 1.48502 * 109.46995 * 209.99941 * 11 9 7 14 14 H 1.48500 * 109.47315 * 330.00098 * 11 9 7 15 15 C 1.34777 * 119.99645 * 90.00205 * 5 4 3 16 16 O 1.21284 * 119.99861 * 175.00543 * 15 5 4 17 17 C 1.50709 * 120.00100 * 354.99964 * 15 5 4 18 18 H 1.08994 * 109.55258 * 335.68436 * 17 15 5 19 19 S 1.81469 * 109.55310 * 95.99573 * 17 15 5 20 20 C 1.81924 * 101.35922 * 165.52069 * 19 17 15 21 21 C 1.52439 * 108.26180 * 295.07958 * 20 19 17 22 22 C 1.51379 * 111.72492 * 52.11856 * 21 20 19 23 23 S 1.76895 * 121.92385 * 160.76092 * 22 21 20 24 24 C 1.75442 * 91.28889 * 179.35186 * 23 22 21 25 25 C 1.32412 * 109.45887 * 0.13490 * 24 23 22 26 26 C 1.33953 * 128.51832 * 340.37847 * 22 21 20 27 27 H 1.08996 * 109.47083 * 59.99905 * 1 2 3 28 28 H 1.09003 * 109.47152 * 299.99849 * 1 2 3 29 29 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47045 * 300.00486 * 3 2 1 31 31 H 1.09002 * 109.47013 * 60.00451 * 3 2 1 32 32 H 1.09000 * 109.47261 * 185.00252 * 4 3 2 33 33 H 1.09004 * 109.47261 * 305.00716 * 4 3 2 34 34 H 1.08996 * 109.47118 * 215.76966 * 6 5 4 35 35 H 1.08999 * 109.47558 * 335.77912 * 6 5 4 36 36 H 0.97002 * 120.00409 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.70152 * 175.39269 * 20 19 17 38 38 H 1.08997 * 109.70526 * 54.77644 * 20 19 17 39 39 H 1.08995 * 109.03229 * 291.53773 * 21 20 19 40 40 H 1.09004 * 108.96571 * 172.65153 * 21 20 19 41 41 H 1.08002 * 125.27296 * 180.10567 * 24 23 22 42 42 H 1.07993 * 122.04205 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3404 7 6 2.8490 -1.4731 -1.9346 8 1 2.0349 -0.8223 -2.2177 9 6 2.7382 -2.8352 -2.1178 10 7 1.6412 -3.3418 -2.6367 11 14 4.1465 -3.9608 -1.6288 12 1 3.9722 -4.3871 -0.2170 13 1 4.1533 -5.1564 -2.5096 14 1 5.4336 -3.2339 -1.7710 15 6 4.2633 1.3330 -2.3200 16 8 4.7146 0.8285 -3.3264 17 6 4.0230 2.8198 -2.2650 18 1 3.2564 3.0381 -1.5216 19 16 5.5641 3.6681 -1.8194 20 6 5.1617 5.3900 -2.2469 21 6 4.9550 5.4720 -3.7550 22 6 3.9618 4.4384 -4.2414 23 16 3.1428 4.5899 -5.8020 24 6 2.2894 3.0786 -5.5456 25 6 2.6371 2.5690 -4.3740 26 6 3.5630 3.3136 -3.6330 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 3.9785 2.1766 0.0903 33 1 3.8508 0.5685 0.8426 34 1 4.9570 -1.1433 -1.9740 35 1 4.2613 -1.3054 -0.3436 36 1 1.5634 -4.3001 -2.7660 37 1 5.9832 6.0433 -1.9525 38 1 4.2489 5.6924 -1.7338 39 1 5.9103 5.3095 -4.2540 40 1 4.5864 6.4660 -4.0085 41 1 1.5885 2.6332 -6.2361 42 1 2.2307 1.6364 -4.0115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610387393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:48 Heat of formation + Delta-G solvation = -26.843290 kcal Electronic energy + Delta-G solvation = -26412.354266 eV Core-core repulsion = 22804.348886 eV Total energy + Delta-G solvation = -3608.005380 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.71710 -37.99871 -37.11800 -34.87991 -34.04046 -32.56606 -30.86116 -29.59840 -28.08560 -27.16591 -25.63168 -24.24162 -22.57313 -22.29915 -22.13970 -19.02689 -18.15081 -17.54272 -16.87067 -16.85479 -16.22825 -15.80815 -15.60375 -15.30021 -14.93301 -14.52314 -14.43940 -13.92049 -13.88994 -13.65540 -13.27246 -13.05707 -12.92276 -12.76618 -12.35105 -12.08537 -11.89110 -11.87882 -11.68271 -11.53196 -11.45852 -11.30463 -10.87268 -10.75264 -10.62387 -10.28299 -10.08863 -10.03201 -9.40587 -9.19120 -8.94955 -8.53876 -8.41587 -8.25528 -7.79310 -7.72006 -5.91575 -3.84195 1.01269 1.34907 1.62093 1.99699 2.23565 2.75202 3.36914 3.42666 3.46042 3.48833 3.75869 4.34205 4.39693 4.54197 4.57840 4.67437 4.84158 4.98730 5.04136 5.18271 5.32401 5.39969 5.41921 5.45174 5.49978 5.56146 5.58005 5.69142 5.80413 5.87142 5.91851 6.11836 6.13847 6.34096 6.38759 6.54403 6.74599 7.05114 7.33610 7.75050 7.79329 8.18728 8.62673 8.88151 9.16602 9.69874 11.22410 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.004310 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.870429 B = 6495.529685 C = 6793.792454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.340 6.340 3 C 0.041 3.959 4 C 0.108 3.892 5 N -0.579 5.579 6 C 0.221 3.779 7 C -0.489 4.489 8 H 0.079 0.921 9 C 0.070 3.930 10 N -0.904 5.904 11 Si 0.866 3.134 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.266 1.266 15 C 0.533 3.467 16 O -0.509 6.509 17 C -0.023 4.023 18 H 0.115 0.885 19 S -0.205 6.205 20 C -0.085 4.085 21 C -0.047 4.047 22 C -0.169 4.169 23 S 0.074 5.926 24 C -0.205 4.205 25 C -0.103 4.103 26 C -0.076 4.076 27 H 0.032 0.968 28 H 0.024 0.976 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.036 0.964 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.167 0.833 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 20.254 2.824 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.257 6.257 3 C -0.038 4.038 4 C -0.017 4.017 5 N -0.311 5.311 6 C 0.101 3.899 7 C -0.528 4.528 8 H 0.097 0.903 9 C -0.131 4.131 10 N -0.544 5.544 11 Si 0.693 3.307 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.191 1.191 15 C 0.315 3.685 16 O -0.384 6.384 17 C -0.157 4.157 18 H 0.133 0.867 19 S 0.023 5.977 20 C -0.235 4.235 21 C -0.087 4.087 22 C -0.286 4.286 23 S 0.338 5.662 24 C -0.340 4.340 25 C -0.133 4.133 26 C -0.090 4.090 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.135 0.865 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.185 0.815 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.966 20.234 1.469 20.503 hybrid contribution -1.020 -1.176 0.855 1.776 sum 1.947 19.058 2.324 19.298 Atomic orbital electron populations 1.22600 0.82412 1.02726 0.98006 1.88350 1.18208 1.24392 1.94779 1.22968 0.94681 0.87093 0.99014 1.21666 0.92688 0.98921 0.88411 1.47813 1.64517 1.08755 1.10024 1.19720 0.98801 0.74251 0.97087 1.21158 1.00022 0.92434 1.39204 0.90270 1.24744 0.95306 0.97752 0.95255 1.69873 1.26553 1.12169 1.45853 0.87013 0.84001 0.81112 0.78539 1.20369 1.21333 1.19111 1.19104 0.79667 0.85566 0.84115 1.90714 1.43429 1.73618 1.30607 1.22462 0.98496 0.97607 0.97125 0.86744 1.87150 1.22073 1.04591 1.83919 1.23370 1.05974 0.96132 0.98016 1.20227 0.97741 0.96217 0.94534 1.24297 1.04913 1.00640 0.98778 1.84075 1.40558 1.23084 1.18473 1.25097 1.07240 0.99721 1.01898 1.20274 0.97623 1.00993 0.94426 1.18942 0.99625 0.94408 0.96034 0.94967 0.95750 0.89564 0.94133 0.93659 0.89701 0.89293 0.94658 0.95432 0.93046 0.86528 0.89184 0.88971 0.89667 0.81539 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 11.01 101.05 1.11 1.77 16 2 O -0.34 -6.68 8.07 -35.23 -0.28 -6.96 16 3 C 0.04 0.64 6.01 37.16 0.22 0.86 16 4 C 0.11 1.69 5.42 -4.04 -0.02 1.67 16 5 N -0.58 -11.88 2.44 -175.05 -0.43 -12.31 16 6 C 0.22 5.44 4.09 -5.19 -0.02 5.42 16 7 C -0.49 -13.74 8.25 -34.44 -0.28 -14.02 16 8 H 0.08 2.42 7.41 -52.49 -0.39 2.03 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 11 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 14 H -0.27 -6.64 6.54 56.52 0.37 -6.27 16 15 C 0.53 10.99 5.83 -10.98 -0.06 10.92 16 16 O -0.51 -12.74 15.57 5.55 0.09 -12.65 16 17 C -0.02 -0.36 2.34 -28.11 -0.07 -0.43 16 18 H 0.11 1.60 5.41 -51.93 -0.28 1.32 16 19 S -0.21 -2.81 21.36 -107.50 -2.30 -5.11 16 20 C -0.09 -0.78 6.52 36.87 0.24 -0.53 16 21 C -0.05 -0.46 5.90 -27.84 -0.16 -0.62 16 22 C -0.17 -2.26 6.28 -35.48 -0.22 -2.49 16 23 S 0.07 0.91 23.25 -107.50 -2.50 -1.58 16 24 C -0.20 -2.99 11.18 28.81 0.32 -2.67 16 25 C -0.10 -1.76 8.73 -40.83 -0.36 -2.12 16 26 C -0.08 -1.21 5.12 -104.54 -0.54 -1.75 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.04 0.63 7.21 -51.93 -0.37 0.26 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.08 6.43 -51.93 -0.33 0.74 16 33 H 0.09 1.34 7.86 -51.93 -0.41 0.93 16 34 H 0.04 0.95 6.59 -51.93 -0.34 0.60 16 35 H 0.03 0.65 7.26 -51.93 -0.38 0.28 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 42 H 0.15 2.87 7.64 -52.49 -0.40 2.47 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -34.73 362.33 -9.67 -44.40 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.88 Total: 0.49 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 0.06 Total: -2.06 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.35 Total: -39.28 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.20 Total: -19.62 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -4.80 Total: -6.69 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.73 -9.67 -44.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610387393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.555 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds