Wall clock time and date at job start Sat Apr 11 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00050 * 2 1 4 4 C 1.52999 * 109.47333 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46861 * 65.00008 * 4 3 2 6 6 C 1.46496 * 120.00164 * 269.99910 * 5 4 3 7 7 C 1.50702 * 109.46970 * 95.77420 * 6 5 4 8 8 H 1.07999 * 120.00179 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00137 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00145 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99756 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46949 * 90.00090 * 11 9 7 13 13 H 1.48502 * 109.46995 * 209.99941 * 11 9 7 14 14 H 1.48500 * 109.47315 * 330.00098 * 11 9 7 15 15 C 1.34777 * 119.99645 * 90.00205 * 5 4 3 16 16 O 1.21284 * 119.99861 * 175.00543 * 15 5 4 17 17 C 1.50709 * 120.00100 * 354.99964 * 15 5 4 18 18 H 1.08994 * 109.55258 * 335.68436 * 17 15 5 19 19 S 1.81469 * 109.55310 * 95.99573 * 17 15 5 20 20 C 1.81924 * 101.35922 * 165.52069 * 19 17 15 21 21 C 1.52439 * 108.26180 * 295.07958 * 20 19 17 22 22 C 1.51379 * 111.72492 * 52.11856 * 21 20 19 23 23 S 1.76895 * 121.92385 * 160.76092 * 22 21 20 24 24 C 1.75442 * 91.28889 * 179.35186 * 23 22 21 25 25 C 1.32412 * 109.45887 * 0.13490 * 24 23 22 26 26 C 1.33953 * 128.51832 * 340.37847 * 22 21 20 27 27 H 1.08996 * 109.47083 * 59.99905 * 1 2 3 28 28 H 1.09003 * 109.47152 * 299.99849 * 1 2 3 29 29 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47045 * 300.00486 * 3 2 1 31 31 H 1.09002 * 109.47013 * 60.00451 * 3 2 1 32 32 H 1.09000 * 109.47261 * 185.00252 * 4 3 2 33 33 H 1.09004 * 109.47261 * 305.00716 * 4 3 2 34 34 H 1.08996 * 109.47118 * 215.76966 * 6 5 4 35 35 H 1.08999 * 109.47558 * 335.77912 * 6 5 4 36 36 H 0.97002 * 120.00409 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.70152 * 175.39269 * 20 19 17 38 38 H 1.08997 * 109.70526 * 54.77644 * 20 19 17 39 39 H 1.08995 * 109.03229 * 291.53773 * 21 20 19 40 40 H 1.09004 * 108.96571 * 172.65153 * 21 20 19 41 41 H 1.08002 * 125.27296 * 180.10567 * 24 23 22 42 42 H 1.07993 * 122.04205 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3404 7 6 2.8490 -1.4731 -1.9346 8 1 2.0349 -0.8223 -2.2177 9 6 2.7382 -2.8352 -2.1178 10 7 1.6412 -3.3418 -2.6367 11 14 4.1465 -3.9608 -1.6288 12 1 3.9722 -4.3871 -0.2170 13 1 4.1533 -5.1564 -2.5096 14 1 5.4336 -3.2339 -1.7710 15 6 4.2633 1.3330 -2.3200 16 8 4.7146 0.8285 -3.3264 17 6 4.0230 2.8198 -2.2650 18 1 3.2564 3.0381 -1.5216 19 16 5.5641 3.6681 -1.8194 20 6 5.1617 5.3900 -2.2469 21 6 4.9550 5.4720 -3.7550 22 6 3.9618 4.4384 -4.2414 23 16 3.1428 4.5899 -5.8020 24 6 2.2894 3.0786 -5.5456 25 6 2.6371 2.5690 -4.3740 26 6 3.5630 3.3136 -3.6330 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 3.9785 2.1766 0.0903 33 1 3.8508 0.5685 0.8426 34 1 4.9570 -1.1433 -1.9740 35 1 4.2613 -1.3054 -0.3436 36 1 1.5634 -4.3001 -2.7660 37 1 5.9832 6.0433 -1.9525 38 1 4.2489 5.6924 -1.7338 39 1 5.9103 5.3095 -4.2540 40 1 4.5864 6.4660 -4.0085 41 1 1.5885 2.6332 -6.2361 42 1 2.2307 1.6364 -4.0115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610387393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:48 Heat of formation + Delta-G solvation = -49.730581 kcal Electronic energy + Delta-G solvation = -26413.346734 eV Core-core repulsion = 22804.348886 eV Total energy + Delta-G solvation = -3608.997848 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20602 -39.23164 -38.54795 -36.54064 -34.93101 -34.68835 -32.34274 -31.06370 -29.47300 -28.59749 -27.03131 -25.44932 -23.98489 -23.89779 -23.36335 -20.49352 -19.33734 -19.05412 -18.68996 -18.26026 -17.40189 -17.16709 -16.93355 -16.70784 -16.30768 -15.98278 -15.87021 -15.36305 -15.16715 -14.79271 -14.63555 -14.47603 -14.18478 -14.11404 -13.90516 -13.75837 -13.37635 -13.16620 -12.89093 -12.82518 -12.76491 -12.56979 -12.43117 -12.35408 -12.06042 -11.90070 -11.83866 -11.53788 -11.06791 -10.76684 -10.67971 -10.36416 -9.64428 -9.45466 -9.31020 -8.82373 -8.18235 -6.14709 -0.09974 0.25482 0.57636 0.85547 1.32764 1.33832 1.36123 1.45570 1.48817 1.93552 2.25572 2.39031 3.03779 3.17393 3.31843 3.53825 3.66861 3.85602 3.98096 4.15338 4.17897 4.24031 4.31387 4.37103 4.38447 4.47758 4.54904 4.59732 4.69924 4.74539 4.78828 4.87630 4.90746 4.94375 4.95189 5.00045 5.22762 5.37751 5.55405 5.62585 6.40206 6.45046 6.63041 6.83912 7.24603 7.44262 8.98799 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.004310 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.870429 B = 6495.529685 C = 6793.792454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.383 6.383 3 C 0.039 3.961 4 C 0.102 3.898 5 N -0.587 5.587 6 C 0.231 3.769 7 C -0.478 4.478 8 H 0.039 0.961 9 C 0.009 3.991 10 N -0.949 5.949 11 Si 0.930 3.070 12 H -0.258 1.258 13 H -0.287 1.287 14 H -0.261 1.261 15 C 0.528 3.472 16 O -0.568 6.568 17 C -0.011 4.011 18 H 0.130 0.870 19 S -0.235 6.235 20 C -0.069 4.069 21 C -0.051 4.051 22 C -0.162 4.162 23 S 0.142 5.858 24 C -0.220 4.220 25 C -0.132 4.132 26 C -0.110 4.110 27 H 0.024 0.976 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.011 0.989 35 H 0.043 0.957 36 H 0.260 0.740 37 H 0.153 0.847 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.176 0.824 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.266 24.128 4.195 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.302 6.302 3 C -0.038 4.038 4 C -0.020 4.020 5 N -0.317 5.317 6 C 0.109 3.891 7 C -0.517 4.517 8 H 0.058 0.942 9 C -0.187 4.187 10 N -0.592 5.592 11 Si 0.755 3.245 12 H -0.183 1.183 13 H -0.213 1.213 14 H -0.185 1.185 15 C 0.314 3.686 16 O -0.447 6.447 17 C -0.145 4.145 18 H 0.148 0.852 19 S -0.007 6.007 20 C -0.218 4.218 21 C -0.091 4.091 22 C -0.280 4.280 23 S 0.407 5.593 24 C -0.355 4.355 25 C -0.163 4.163 26 C -0.124 4.124 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.117 0.883 34 H 0.029 0.971 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.170 0.830 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.194 0.806 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.506 24.152 2.886 24.738 hybrid contribution -1.543 -2.206 0.330 2.712 sum 2.963 21.946 3.216 22.378 Atomic orbital electron populations 1.22593 0.81468 1.01863 0.99584 1.88257 1.19586 1.27186 1.95133 1.23135 0.94214 0.85794 1.00692 1.22043 0.93122 1.00553 0.86306 1.47844 1.64522 1.07289 1.12056 1.19326 0.95794 0.77274 0.96716 1.21243 1.00118 0.92049 1.38278 0.94238 1.25583 0.97906 0.99553 0.95633 1.70030 1.28808 1.12494 1.47823 0.85973 0.80730 0.78749 0.79034 1.18317 1.21348 1.18536 1.19930 0.77959 0.87796 0.82945 1.90660 1.46050 1.75324 1.32651 1.22183 1.00292 0.93955 0.98047 0.85204 1.87221 1.21056 1.08601 1.83811 1.23603 1.08279 0.92319 0.97574 1.20468 0.96939 0.96648 0.95050 1.24883 1.04193 1.00207 0.98698 1.83774 1.38524 1.19937 1.17092 1.25356 1.07516 1.01459 1.01194 1.20107 0.99662 1.00285 0.96223 1.18939 1.00918 0.95821 0.96697 0.95700 0.91647 0.91779 0.94987 0.89085 0.86119 0.88349 0.97140 0.93883 0.93081 0.82960 0.87231 0.88401 0.85837 0.80638 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 11.01 113.37 1.25 2.67 16 2 O -0.38 -15.40 8.07 -148.98 -1.20 -16.60 16 3 C 0.04 1.19 6.01 71.98 0.43 1.62 16 4 C 0.10 3.11 5.42 86.38 0.47 3.57 16 5 N -0.59 -24.74 2.44 -826.13 -2.01 -26.75 16 6 C 0.23 11.74 4.09 85.63 0.35 12.09 16 7 C -0.48 -28.35 8.25 25.60 0.21 -28.14 16 8 H 0.04 2.61 7.41 -2.91 -0.02 2.59 16 9 C 0.01 0.56 5.47 84.66 0.46 1.02 16 10 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 11 Si 0.93 46.64 27.47 68.60 1.88 48.53 16 12 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 14 H -0.26 -12.75 6.54 99.48 0.65 -12.10 16 15 C 0.53 22.69 5.83 87.66 0.51 23.20 16 16 O -0.57 -30.28 15.57 -3.04 -0.05 -30.33 16 17 C -0.01 -0.36 2.34 29.70 0.07 -0.29 16 18 H 0.13 3.51 5.41 -2.39 -0.01 3.50 16 19 S -0.23 -5.88 21.36 -56.49 -1.21 -7.08 16 20 C -0.07 -0.91 6.52 71.80 0.47 -0.44 16 21 C -0.05 -0.76 5.90 29.88 0.18 -0.58 16 22 C -0.16 -3.95 6.28 24.93 0.16 -3.79 16 23 S 0.14 3.19 23.25 -56.49 -1.31 1.88 16 24 C -0.22 -6.61 11.18 66.71 0.75 -5.87 16 25 C -0.13 -4.82 8.73 21.59 0.19 -4.63 16 26 C -0.11 -3.52 5.12 -19.81 -0.10 -3.62 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.03 1.01 7.21 -2.39 -0.02 1.00 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.12 2.78 6.43 -2.39 -0.02 2.77 16 33 H 0.10 2.81 7.86 -2.38 -0.02 2.79 16 34 H 0.01 0.59 6.59 -2.39 -0.02 0.58 16 35 H 0.04 2.05 7.26 -2.39 -0.02 2.03 16 36 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 37 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.18 4.66 8.06 -2.91 -0.02 4.63 16 42 H 0.10 4.44 7.64 -2.91 -0.02 4.42 16 Total: -1.00 -83.52 362.33 2.76 -80.76 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.97 Total: 13.67 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 5.39 Total: -3.17 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -1.71 Total: -87.65 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -1.25 Total: -46.93 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.88 Total: 48.53 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -2.52 Total: -5.21 kcal Total: -83.52 2.76 -80.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610387393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.030 kcal (2) G-P(sol) polarization free energy of solvation -83.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds