Wall clock time and date at job start Sat Apr 11 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81395 * 102.99970 * 2 1 4 4 C 1.53002 * 109.47034 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.99730 * 50.80003 * 4 3 2 6 6 C 1.54330 * 109.88066 * 171.89150 * 4 3 2 7 7 C 1.55159 * 102.94227 * 141.61304 * 6 4 3 8 8 C 1.54912 * 101.57657 * 324.49802 * 7 6 4 9 9 N 1.47012 * 109.88550 * 289.69873 * 4 3 2 10 10 S 1.65605 * 125.64726 * 61.59355 * 9 4 3 11 11 O 1.42098 * 106.40580 * 240.44425 * 10 9 4 12 12 O 1.42097 * 106.40032 * 13.36572 * 10 9 4 13 13 C 1.76198 * 107.21597 * 126.90191 * 10 9 4 14 14 C 1.38659 * 119.87853 * 269.72639 * 13 10 9 15 15 C 1.38617 * 120.50364 * 179.72162 * 14 13 10 16 16 C 1.37638 * 120.24235 * 0.55559 * 15 14 13 17 17 C 1.40692 * 119.75108 * 359.72371 * 16 15 14 18 18 C 1.41399 * 120.24781 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99691 * 150.78532 * 18 17 16 20 20 C 1.39938 * 120.00081 * 330.78473 * 18 17 16 21 21 N 1.30825 * 119.99847 * 349.57398 * 20 18 17 22 22 Si 1.86799 * 120.00195 * 169.56790 * 20 18 17 23 23 H 1.48504 * 109.46855 * 60.00567 * 22 20 18 24 24 H 1.48498 * 109.47335 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47331 * 300.00678 * 22 20 18 26 26 C 1.37600 * 119.87565 * 90.00152 * 13 10 9 27 27 H 1.08999 * 109.47034 * 300.00237 * 1 2 3 28 28 H 1.09002 * 109.46777 * 60.00515 * 1 2 3 29 29 H 1.09007 * 109.46775 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47411 * 59.99779 * 3 2 1 31 31 H 1.09001 * 109.46821 * 299.99459 * 3 2 1 32 32 H 1.09003 * 110.71604 * 259.97462 * 6 4 3 33 33 H 1.08999 * 110.72044 * 23.06802 * 6 4 3 34 34 H 1.09002 * 111.00413 * 82.57133 * 7 6 4 35 35 H 1.08998 * 110.99918 * 206.38696 * 7 6 4 36 36 H 1.09003 * 110.36467 * 155.85392 * 8 7 6 37 37 H 1.09007 * 110.36685 * 278.05935 * 8 7 6 38 38 H 1.07998 * 119.74672 * 0.02562 * 14 13 10 39 39 H 1.07995 * 119.87847 * 180.26158 * 15 14 13 40 40 H 1.08001 * 120.12431 * 179.70317 * 16 15 14 41 41 H 0.97003 * 119.99681 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.12751 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.1860 1.3385 -0.7929 6 6 4.1020 3.4267 -0.2041 7 6 5.3201 3.6223 0.7368 8 6 4.9483 2.6980 1.9231 9 7 4.2911 1.5333 1.3025 10 16 4.1872 0.0183 1.9631 11 8 3.4800 0.1619 3.1872 12 8 3.7644 -0.8468 0.9181 13 6 5.8232 -0.4783 2.3889 14 6 6.5993 -1.1633 1.4663 15 6 7.8901 -1.5551 1.7855 16 6 8.4114 -1.2774 3.0287 17 6 7.6310 -0.5880 3.9749 18 6 8.1563 -0.2966 5.2550 19 1 7.8171 0.5770 5.7918 20 6 9.1156 -1.1402 5.8262 21 7 9.3779 -2.2985 5.2775 22 14 10.0217 -0.6125 7.3721 23 1 9.0437 -0.3883 8.4669 24 1 10.9784 -1.6753 7.7724 25 1 10.7636 0.6460 7.1058 26 6 6.3239 -0.1899 3.6377 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 1.8031 2.2371 0.8899 31 1 1.8032 2.2370 -0.8901 32 1 4.3808 3.6168 -1.2405 33 1 3.2733 4.0686 0.0948 34 1 6.2413 3.2912 0.2573 35 1 5.4014 4.6601 1.0600 36 1 5.8459 2.3869 2.4575 37 1 4.2619 3.2069 2.5999 38 1 6.1968 -1.3890 0.4899 39 1 8.4871 -2.0844 1.0578 40 1 9.4156 -1.5877 3.2771 41 1 10.0432 -2.8831 5.6733 42 1 5.7160 0.3394 4.3564 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619491905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:58 Heat of formation + Delta-G solvation = -47.231527 kcal Electronic energy + Delta-G solvation = -25986.154992 eV Core-core repulsion = 22377.265512 eV Total energy + Delta-G solvation = -3608.889480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.72261 -37.64447 -36.52671 -35.16693 -33.79621 -31.57987 -30.85868 -30.05279 -29.75363 -28.71239 -25.80428 -25.45653 -22.07668 -21.81221 -21.13890 -20.91046 -18.59025 -17.84145 -17.20645 -16.42414 -16.00939 -15.61352 -15.37153 -14.86480 -14.63960 -14.11672 -13.93518 -13.70209 -13.55755 -13.39605 -13.17323 -13.08864 -12.99863 -12.86366 -12.54786 -12.04693 -11.92954 -11.71428 -11.41106 -11.35064 -11.31373 -11.26491 -11.11129 -11.03667 -10.87742 -10.80282 -10.73251 -10.59386 -9.82495 -9.68004 -9.37511 -8.94240 -8.80307 -8.02269 -7.64392 -7.27380 -6.84406 -4.54147 0.97864 1.88741 2.23569 2.64286 2.75485 3.01428 3.04044 3.08118 3.54690 3.85912 4.23150 4.43491 4.47247 4.60521 4.77120 5.01481 5.06627 5.18485 5.25715 5.31134 5.34622 5.40849 5.45945 5.55904 5.65310 5.80707 5.82369 5.85098 5.96617 6.04787 6.15793 6.18828 6.32866 6.52477 6.65368 6.77818 6.91423 7.07997 7.22808 7.38265 7.72299 7.82194 7.95355 8.41261 8.69583 8.73266 10.11075 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.018715 B = 0.003518 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.798913 B = 7957.876788 C = 8424.474708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 S -0.152 6.152 3 C -0.142 4.142 4 C 0.173 3.827 5 H 0.087 0.913 6 C -0.118 4.118 7 C -0.128 4.128 8 C 0.114 3.886 9 N -1.009 6.009 10 S 2.694 3.306 11 O -0.964 6.964 12 O -0.930 6.930 13 C -0.637 4.637 14 C -0.135 4.135 15 C -0.126 4.126 16 C -0.108 4.108 17 C 0.091 3.909 18 C -0.464 4.464 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.804 5.804 22 Si 0.915 3.085 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.126 4.126 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.127 0.873 41 H 0.283 0.717 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.930 10.587 -9.884 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.351 4.351 2 S 0.072 5.928 3 C -0.292 4.292 4 C 0.065 3.935 5 H 0.105 0.895 6 C -0.159 4.159 7 C -0.167 4.167 8 C -0.011 4.011 9 N -0.846 5.846 10 S 2.792 3.208 11 O -0.954 6.954 12 O -0.920 6.920 13 C -0.729 4.729 14 C -0.156 4.156 15 C -0.145 4.145 16 C -0.128 4.128 17 C 0.088 3.912 18 C -0.494 4.494 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.430 5.430 22 Si 0.740 3.260 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.148 4.148 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.145 0.855 41 H 0.094 0.906 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.942 8.917 -9.666 15.363 hybrid contribution 0.256 1.009 0.797 1.311 sum -7.686 9.926 -8.868 15.371 Atomic orbital electron populations 1.23824 1.01766 1.05769 1.03698 1.89820 1.00768 1.04751 1.97468 1.24307 1.00278 0.98939 1.05635 1.20956 0.89668 0.96714 0.86117 0.89470 1.22679 0.98651 0.93883 1.00667 1.22766 0.98238 0.99808 0.95908 1.22040 0.97249 0.86272 0.95583 1.58860 1.70508 1.25986 1.29269 1.01758 0.74320 0.71471 0.73218 1.93517 1.71082 1.85226 1.45573 1.93321 1.78887 1.63055 1.56730 1.29832 1.22907 1.16372 1.03749 1.20128 0.95145 1.02713 0.97641 1.20856 0.95330 1.01194 0.97142 1.21714 1.00179 0.99626 0.91261 1.17687 0.89902 0.90579 0.93053 1.19545 1.19468 1.09416 1.00948 0.90105 1.25904 0.95559 0.93824 0.99133 1.69733 1.27421 1.07138 1.38740 0.86246 0.79468 0.79262 0.81072 1.18858 1.20277 1.18809 1.20834 0.95690 1.04413 0.93821 0.91227 0.91544 0.88718 0.89397 0.88901 0.89992 0.90489 0.90267 0.90013 0.89908 0.91393 0.87451 0.88289 0.85520 0.90606 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 10.76 101.05 1.09 -1.08 16 2 S -0.15 -2.38 17.02 -107.50 -1.83 -4.21 16 3 C -0.14 -1.70 5.41 37.16 0.20 -1.50 16 4 C 0.17 2.13 3.03 -66.95 -0.20 1.93 16 5 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 6 C -0.12 -1.03 6.48 -24.89 -0.16 -1.19 16 7 C -0.13 -1.23 7.09 -24.58 -0.17 -1.40 16 8 C 0.11 1.49 7.24 -2.53 -0.02 1.47 16 9 N -1.01 -15.46 3.39 -104.42 -0.35 -15.82 16 10 S 2.69 53.38 4.97 -107.50 -0.53 52.85 16 11 O -0.96 -21.67 17.27 -57.17 -0.99 -22.66 16 12 O -0.93 -19.04 12.23 -57.17 -0.70 -19.74 16 13 C -0.64 -14.26 5.75 -39.66 -0.23 -14.49 16 14 C -0.14 -2.98 9.53 -39.29 -0.37 -3.36 16 15 C -0.13 -2.85 10.02 -39.66 -0.40 -3.24 16 16 C -0.11 -2.69 8.66 -38.87 -0.34 -3.03 16 17 C 0.09 2.36 5.55 -106.82 -0.59 1.77 16 18 C -0.46 -11.92 9.06 -37.74 -0.34 -12.26 16 19 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 20 C 0.07 1.77 5.26 -17.34 -0.09 1.68 16 21 N -0.80 -20.31 10.86 55.55 0.60 -19.71 16 22 Si 0.92 18.22 29.57 -169.99 -5.03 13.20 16 23 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 25 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 26 C -0.13 -3.07 9.15 -38.87 -0.36 -3.42 16 27 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.09 1.08 8.14 -51.92 -0.42 0.65 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.18 7.88 -51.93 -0.41 0.77 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.11 2.16 7.59 -52.49 -0.40 1.76 16 39 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 40 H 0.13 3.21 6.24 -52.49 -0.33 2.88 16 41 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 42 H 0.11 2.60 7.60 -52.49 -0.40 2.20 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -30.75 362.38 -11.49 -42.24 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.14 Total: 6.51 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: -1.99 Total: -38.13 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.25 Total: -35.52 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.69 Total: -42.40 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.20 kcal Atomic # 16 Polarization: 51.00 SS G_CDS: -2.36 Total: 48.64 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.75 -11.49 -42.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.988 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds