Wall clock time and date at job start Sat Apr 11 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81395 * 102.99970 * 2 1 4 4 C 1.53002 * 109.47034 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.99730 * 50.80003 * 4 3 2 6 6 C 1.54330 * 109.88066 * 171.89150 * 4 3 2 7 7 C 1.55159 * 102.94227 * 141.61304 * 6 4 3 8 8 C 1.54912 * 101.57657 * 324.49802 * 7 6 4 9 9 N 1.47012 * 109.88550 * 289.69873 * 4 3 2 10 10 S 1.65605 * 125.64726 * 61.59355 * 9 4 3 11 11 O 1.42098 * 106.40580 * 240.44425 * 10 9 4 12 12 O 1.42097 * 106.40032 * 13.36572 * 10 9 4 13 13 C 1.76198 * 107.21597 * 126.90191 * 10 9 4 14 14 C 1.38659 * 119.87853 * 269.72639 * 13 10 9 15 15 C 1.38617 * 120.50364 * 179.72162 * 14 13 10 16 16 C 1.37638 * 120.24235 * 0.55559 * 15 14 13 17 17 C 1.40692 * 119.75108 * 359.72371 * 16 15 14 18 18 C 1.41399 * 120.24781 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99691 * 150.78532 * 18 17 16 20 20 C 1.39938 * 120.00081 * 330.78473 * 18 17 16 21 21 N 1.30825 * 119.99847 * 349.57398 * 20 18 17 22 22 Si 1.86799 * 120.00195 * 169.56790 * 20 18 17 23 23 H 1.48504 * 109.46855 * 60.00567 * 22 20 18 24 24 H 1.48498 * 109.47335 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47331 * 300.00678 * 22 20 18 26 26 C 1.37600 * 119.87565 * 90.00152 * 13 10 9 27 27 H 1.08999 * 109.47034 * 300.00237 * 1 2 3 28 28 H 1.09002 * 109.46777 * 60.00515 * 1 2 3 29 29 H 1.09007 * 109.46775 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47411 * 59.99779 * 3 2 1 31 31 H 1.09001 * 109.46821 * 299.99459 * 3 2 1 32 32 H 1.09003 * 110.71604 * 259.97462 * 6 4 3 33 33 H 1.08999 * 110.72044 * 23.06802 * 6 4 3 34 34 H 1.09002 * 111.00413 * 82.57133 * 7 6 4 35 35 H 1.08998 * 110.99918 * 206.38696 * 7 6 4 36 36 H 1.09003 * 110.36467 * 155.85392 * 8 7 6 37 37 H 1.09007 * 110.36685 * 278.05935 * 8 7 6 38 38 H 1.07998 * 119.74672 * 0.02562 * 14 13 10 39 39 H 1.07995 * 119.87847 * 180.26158 * 15 14 13 40 40 H 1.08001 * 120.12431 * 179.70317 * 16 15 14 41 41 H 0.97003 * 119.99681 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.12751 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.1860 1.3385 -0.7929 6 6 4.1020 3.4267 -0.2041 7 6 5.3201 3.6223 0.7368 8 6 4.9483 2.6980 1.9231 9 7 4.2911 1.5333 1.3025 10 16 4.1872 0.0183 1.9631 11 8 3.4800 0.1619 3.1872 12 8 3.7644 -0.8468 0.9181 13 6 5.8232 -0.4783 2.3889 14 6 6.5993 -1.1633 1.4663 15 6 7.8901 -1.5551 1.7855 16 6 8.4114 -1.2774 3.0287 17 6 7.6310 -0.5880 3.9749 18 6 8.1563 -0.2966 5.2550 19 1 7.8171 0.5770 5.7918 20 6 9.1156 -1.1402 5.8262 21 7 9.3779 -2.2985 5.2775 22 14 10.0217 -0.6125 7.3721 23 1 9.0437 -0.3883 8.4669 24 1 10.9784 -1.6753 7.7724 25 1 10.7636 0.6460 7.1058 26 6 6.3239 -0.1899 3.6377 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 1.8031 2.2371 0.8899 31 1 1.8032 2.2370 -0.8901 32 1 4.3808 3.6168 -1.2405 33 1 3.2733 4.0686 0.0948 34 1 6.2413 3.2912 0.2573 35 1 5.4014 4.6601 1.0600 36 1 5.8459 2.3869 2.4575 37 1 4.2619 3.2069 2.5999 38 1 6.1968 -1.3890 0.4899 39 1 8.4871 -2.0844 1.0578 40 1 9.4156 -1.5877 3.2771 41 1 10.0432 -2.8831 5.6733 42 1 5.7160 0.3394 4.3564 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619491905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:57 Heat of formation + Delta-G solvation = -65.502475 kcal Electronic energy + Delta-G solvation = -25986.947280 eV Core-core repulsion = 22377.265512 eV Total energy + Delta-G solvation = -3609.681768 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.69531 -39.48691 -38.13781 -36.78918 -35.65372 -32.56565 -31.92935 -31.85022 -31.53942 -29.66654 -27.36101 -26.72001 -23.72611 -22.97431 -22.83114 -21.98880 -20.19097 -19.29544 -18.60800 -17.88757 -17.39509 -17.07464 -16.88947 -16.50548 -16.21267 -15.34766 -15.19321 -15.04031 -14.90411 -14.71340 -14.36639 -14.23197 -14.13071 -13.93857 -13.81857 -13.75185 -13.23708 -13.03902 -13.02228 -12.95610 -12.94451 -12.84366 -12.62977 -12.46655 -12.22013 -12.01432 -11.70835 -11.57492 -11.53131 -11.43636 -11.17674 -10.21696 -9.98010 -9.83140 -9.53897 -8.68514 -8.46722 -6.49389 -0.53602 0.36587 0.80849 0.90659 1.37299 1.47115 1.49625 1.74049 2.13428 2.18959 2.59088 2.85064 3.42116 3.46606 3.66409 3.81100 3.91654 4.16159 4.22493 4.27623 4.39221 4.39930 4.40520 4.44004 4.63660 4.66446 4.79767 4.84308 4.86739 4.93631 4.99397 5.05229 5.06381 5.10054 5.19864 5.24497 5.38049 5.44485 5.51420 5.56314 5.84684 5.92415 6.07738 6.50258 6.79415 6.82296 8.29138 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.018715 B = 0.003518 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.798913 B = 7957.876788 C = 8424.474708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 S -0.255 6.255 3 C -0.122 4.122 4 C 0.161 3.839 5 H 0.082 0.918 6 C -0.104 4.104 7 C -0.120 4.120 8 C 0.100 3.900 9 N -1.006 6.006 10 S 2.714 3.286 11 O -0.997 6.997 12 O -0.937 6.937 13 C -0.645 4.645 14 C -0.138 4.138 15 C -0.126 4.126 16 C -0.130 4.130 17 C 0.064 3.936 18 C -0.500 4.500 19 H 0.081 0.919 20 C 0.032 3.968 21 N -0.835 5.835 22 Si 0.988 3.012 23 H -0.262 1.262 24 H -0.267 1.267 25 H -0.255 1.255 26 C -0.145 4.145 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.117 0.883 41 H 0.290 0.710 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.708 12.864 -11.301 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 S -0.030 6.030 3 C -0.271 4.271 4 C 0.054 3.946 5 H 0.100 0.900 6 C -0.145 4.145 7 C -0.159 4.159 8 C -0.025 4.025 9 N -0.847 5.847 10 S 2.810 3.190 11 O -0.987 6.987 12 O -0.927 6.927 13 C -0.733 4.733 14 C -0.159 4.159 15 C -0.145 4.145 16 C -0.150 4.150 17 C 0.061 3.939 18 C -0.530 4.530 19 H 0.099 0.901 20 C -0.182 4.182 21 N -0.462 5.462 22 Si 0.809 3.191 23 H -0.186 1.186 24 H -0.192 1.192 25 H -0.179 1.179 26 C -0.166 4.166 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.148 0.852 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.134 0.866 41 H 0.101 0.899 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.694 11.170 -11.089 17.981 hybrid contribution 0.337 0.349 1.095 1.197 sum -8.358 11.519 -9.994 17.390 Atomic orbital electron populations 1.23741 0.97432 1.06445 1.05225 1.89873 1.05463 1.09986 1.97721 1.24343 1.00031 0.95224 1.07525 1.21370 0.89813 0.99260 0.84110 0.89952 1.22727 0.98737 0.90966 1.02050 1.22778 0.98519 1.00282 0.94328 1.22320 0.96549 0.86216 0.97374 1.58529 1.70754 1.24718 1.30697 1.01074 0.72759 0.72519 0.72632 1.93473 1.71269 1.86275 1.47708 1.93391 1.78386 1.64676 1.56240 1.30382 1.24586 1.15388 1.02981 1.20461 0.94981 1.01965 0.98471 1.21183 0.95897 1.00568 0.96856 1.21709 0.99996 1.00954 0.92324 1.18045 0.90784 0.91336 0.93767 1.19843 1.21250 1.10305 1.01560 0.90068 1.26792 0.95669 0.93386 1.02329 1.69793 1.27963 1.08031 1.40367 0.85151 0.78120 0.79246 0.76624 1.18641 1.19164 1.17879 1.20870 0.95506 1.05371 0.94863 0.90682 0.88961 0.88605 0.89097 0.85199 0.87223 0.88267 0.90677 0.87158 0.92187 0.90337 0.85300 0.85365 0.86552 0.89886 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 10.76 113.37 1.22 -2.26 16 2 S -0.25 -7.71 17.02 -56.49 -0.96 -8.67 16 3 C -0.12 -2.57 5.41 71.98 0.39 -2.18 16 4 C 0.16 3.55 3.03 45.35 0.14 3.69 16 5 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 6 C -0.10 -1.35 6.48 31.79 0.21 -1.15 16 7 C -0.12 -1.93 7.09 31.99 0.23 -1.70 16 8 C 0.10 2.52 7.24 86.86 0.63 3.15 16 9 N -1.01 -30.05 3.39 -484.27 -1.64 -31.69 16 10 S 2.71 109.42 4.97 -56.49 -0.28 109.14 16 11 O -1.00 -46.27 17.27 -128.00 -2.21 -48.48 16 12 O -0.94 -38.79 12.23 -128.00 -1.57 -40.36 16 13 C -0.65 -29.79 5.75 22.22 0.13 -29.66 16 14 C -0.14 -6.17 9.53 22.46 0.21 -5.96 16 15 C -0.13 -5.78 10.02 22.22 0.22 -5.56 16 16 C -0.13 -6.75 8.66 22.73 0.20 -6.55 16 17 C 0.06 3.47 5.55 -21.29 -0.12 3.35 16 18 C -0.50 -26.87 9.06 23.46 0.21 -26.65 16 19 H 0.08 4.16 7.87 -2.91 -0.02 4.14 16 20 C 0.03 1.60 5.26 85.25 0.45 2.05 16 21 N -0.84 -43.38 10.86 21.82 0.24 -43.15 16 22 Si 0.99 37.76 29.57 68.60 2.03 39.78 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 24 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 25 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 26 C -0.15 -7.42 9.15 22.73 0.21 -7.22 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 1.88 8.14 -2.40 -0.02 1.86 16 31 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.10 0.91 7.85 -2.39 -0.02 0.89 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.77 7.88 -2.39 -0.02 1.75 16 37 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.13 5.13 7.59 -2.91 -0.02 5.10 16 39 H 0.13 4.99 8.06 -2.91 -0.02 4.96 16 40 H 0.12 6.18 6.24 -2.91 -0.02 6.16 16 41 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 42 H 0.11 5.32 7.60 -2.91 -0.02 5.30 16 Total: -1.00 -70.83 362.38 0.94 -69.89 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 1.01 Total: 30.17 kcal Atomic # 6 Polarization: -80.96 SS G_CDS: 4.32 Total: -76.64 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -1.40 Total: -74.84 kcal Atomic # 8 Polarization: -85.06 SS G_CDS: -3.78 Total: -88.83 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.78 kcal Atomic # 16 Polarization: 101.71 SS G_CDS: -1.24 Total: 100.47 kcal Total: -70.83 0.94 -69.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.388 kcal (2) G-P(sol) polarization free energy of solvation -70.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds