Wall clock time and date at job start Sat Apr 11 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 108.75617 * 2 1 4 4 C 1.53491 * 108.79162 * 241.64824 * 2 1 3 5 5 S 1.78680 * 107.06896 * 156.90152 * 4 2 1 6 6 C 1.83139 * 105.77858 * 92.55673 * 5 4 2 7 7 C 1.56691 * 108.04285 * 321.71867 * 6 5 4 8 8 N 1.42789 * 113.64346 * 321.08698 * 7 6 5 9 9 S 1.65595 * 121.56529 * 284.07357 * 8 7 6 10 10 O 1.42097 * 106.40391 * 336.45666 * 9 8 7 11 11 O 1.42108 * 106.39934 * 203.53873 * 9 8 7 12 12 C 1.76197 * 107.21731 * 89.99889 * 9 8 7 13 13 C 1.38664 * 119.87466 * 90.00131 * 12 9 8 14 14 C 1.38613 * 120.49918 * 179.72025 * 13 12 9 15 15 C 1.37639 * 120.25034 * 0.27792 * 14 13 12 16 16 C 1.40693 * 119.74415 * 359.97438 * 15 14 13 17 17 C 1.41391 * 120.24543 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00306 * 155.16774 * 17 16 15 19 19 C 1.39944 * 119.99916 * 335.16661 * 17 16 15 20 20 N 1.30831 * 119.99982 * 342.35386 * 19 17 16 21 21 Si 1.86799 * 120.00181 * 162.35947 * 19 17 16 22 22 H 1.48494 * 109.47329 * 59.99943 * 21 19 17 23 23 H 1.48505 * 109.47096 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46963 * 299.99610 * 21 19 17 25 25 C 1.37593 * 119.88009 * 270.27510 * 12 9 8 26 26 C 1.44914 * 108.69506 * 118.25627 * 2 1 3 27 27 H 1.08996 * 109.46802 * 178.34776 * 1 2 3 28 28 H 1.08999 * 109.47347 * 298.34993 * 1 2 3 29 29 H 1.09000 * 109.46769 * 58.35504 * 1 2 3 30 30 H 1.09003 * 109.93246 * 37.51328 * 4 2 1 31 31 H 1.09003 * 110.00181 * 276.33221 * 4 2 1 32 32 H 1.08996 * 109.74880 * 202.08464 * 6 5 4 33 33 H 1.08997 * 109.74902 * 81.35115 * 6 5 4 34 34 H 1.08994 * 108.65033 * 200.01040 * 7 6 5 35 35 H 1.09007 * 108.64914 * 82.16046 * 7 6 5 36 36 H 1.08004 * 119.74920 * 359.97438 * 13 12 9 37 37 H 1.08000 * 119.86981 * 180.24893 * 14 13 12 38 38 H 1.07993 * 120.12719 * 179.97438 * 15 14 13 39 39 H 0.96995 * 119.99929 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.12645 * 0.02562 * 25 12 9 41 41 H 1.09002 * 109.17226 * 59.96718 * 26 2 1 42 42 H 1.09002 * 109.35678 * 300.75390 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8805 1.0321 0.0000 4 6 2.0245 -0.6900 -1.2788 5 16 3.6808 -0.0958 -1.5886 6 6 4.8005 -1.2947 -0.7744 7 6 4.1397 -1.7360 0.5761 8 7 3.4833 -0.6726 1.2669 9 16 4.3363 0.4775 2.0988 10 8 5.5882 -0.1098 2.4257 11 8 3.4487 1.0085 3.0733 12 6 4.6803 1.7880 0.9724 13 6 3.7860 2.8397 0.8425 14 6 4.0465 3.8803 -0.0354 15 6 5.1956 3.8771 -0.7930 16 6 6.1077 2.8125 -0.6733 17 6 7.2917 2.7988 -1.4460 18 1 8.1548 2.2484 -1.1019 19 6 7.3452 3.4984 -2.6569 20 7 6.2383 3.8701 -3.2470 21 14 8.9969 3.9014 -3.4306 22 1 9.7326 2.6424 -3.7110 23 1 8.7816 4.6415 -4.6999 24 1 9.7896 4.7404 -2.4963 25 6 5.8326 1.7612 0.2209 26 6 1.9945 -0.6498 1.2091 27 1 -0.3633 -1.0272 -0.0296 28 1 -0.3634 0.4880 0.9044 29 1 -0.3633 0.5392 -0.8749 30 1 1.3747 -0.4323 -2.1151 31 1 2.0376 -1.7709 -1.1380 32 1 5.7633 -0.8238 -0.5766 33 1 4.9399 -2.1637 -1.4173 34 1 4.9131 -2.1477 1.2244 35 1 3.4103 -2.5189 0.3678 36 1 2.8816 2.8502 1.4327 37 1 3.3449 4.6963 -0.1256 38 1 5.3964 4.6886 -1.4767 39 1 6.2754 4.3554 -4.0860 40 1 6.5255 0.9387 0.3201 41 1 1.6212 -1.6737 1.2313 42 1 1.6122 -0.1132 2.0774 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619499485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:03 Heat of formation + Delta-G solvation = -50.442803 kcal Electronic energy + Delta-G solvation = -27081.855922 eV Core-core repulsion = 23472.827190 eV Total energy + Delta-G solvation = -3609.028732 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.39525 -37.50053 -36.77147 -35.31321 -34.45863 -33.72390 -30.20452 -29.91828 -29.64352 -27.35730 -25.93053 -25.36440 -22.98163 -21.70908 -20.87716 -20.56603 -18.54661 -17.97485 -16.98107 -16.39885 -16.07982 -15.82193 -15.27703 -14.99098 -14.67664 -14.39294 -14.02638 -13.88177 -13.38274 -13.26994 -13.23697 -12.85325 -12.59073 -12.48151 -12.16615 -11.89216 -11.83229 -11.79471 -11.54704 -11.38784 -11.33835 -11.28793 -10.96210 -10.91615 -10.83186 -10.78657 -10.53869 -10.47288 -9.68018 -9.54522 -9.24509 -9.21732 -8.82962 -7.89403 -7.54177 -6.97386 -6.80318 -4.41087 0.99579 2.05836 2.34831 2.76488 3.04660 3.06409 3.07704 3.16083 3.43356 3.90454 4.29016 4.51216 4.60573 4.68145 4.81363 4.93356 5.02398 5.16273 5.36369 5.45078 5.53818 5.56400 5.62959 5.64025 5.73257 5.73723 5.88297 6.04403 6.09028 6.14997 6.24861 6.27906 6.39098 6.69538 6.75180 6.89309 7.03363 7.15722 7.36042 7.51622 7.86136 7.92107 8.07365 8.52425 8.79575 8.85293 10.14470 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.004964 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.903485 B = 5639.117022 C = 5986.149881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 H 0.097 0.903 4 C -0.099 4.099 5 S -0.197 6.197 6 C -0.123 4.123 7 C 0.118 3.882 8 N -0.991 5.991 9 S 2.685 3.315 10 O -0.972 6.972 11 O -0.975 6.975 12 C -0.611 4.611 13 C -0.138 4.138 14 C -0.119 4.119 15 C -0.114 4.114 16 C 0.101 3.899 17 C -0.464 4.464 18 H 0.078 0.922 19 C 0.078 3.922 20 N -0.791 5.791 21 Si 0.906 3.094 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.264 1.264 25 C -0.111 4.111 26 C 0.129 3.871 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.281 0.719 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.753 -9.173 1.911 12.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 H 0.116 0.884 4 C -0.248 4.248 5 S 0.032 5.968 6 C -0.274 4.274 7 C -0.011 4.011 8 N -0.824 5.824 9 S 2.784 3.216 10 O -0.962 6.962 11 O -0.965 6.965 12 C -0.704 4.704 13 C -0.159 4.159 14 C -0.138 4.138 15 C -0.134 4.134 16 C 0.097 3.903 17 C -0.494 4.494 18 H 0.096 0.904 19 C -0.140 4.140 20 N -0.417 5.417 21 Si 0.731 3.269 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.133 4.133 26 C 0.005 3.995 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.138 0.862 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.313 -8.304 2.045 11.927 hybrid contribution 0.346 -0.533 -0.783 1.009 sum -7.967 -8.838 1.261 11.965 Atomic orbital electron populations 1.21866 0.94277 1.01696 1.02452 1.20596 0.96191 1.02814 0.94531 0.88442 1.23269 0.98526 1.02266 1.00745 1.87555 0.99314 1.38095 1.71879 1.25176 1.02216 1.01642 0.98333 1.21187 0.97815 0.89456 0.92688 1.57471 1.15001 1.41802 1.68103 1.01814 0.72470 0.73359 0.74006 1.93508 1.42148 1.77541 1.83032 1.93490 1.66184 1.79309 1.57539 1.29445 1.05336 1.15876 1.19758 1.19899 0.98235 0.95982 1.01790 1.20709 0.97807 0.97662 0.97643 1.21540 0.94591 0.98400 0.98886 1.17533 0.92630 0.89692 0.90402 1.19511 0.98802 1.27732 1.03331 0.90388 1.25850 0.97859 0.93538 0.96737 1.69793 1.28431 1.28482 1.14949 0.86397 0.82500 0.79604 0.78432 1.19014 1.20380 1.18843 1.20555 0.94928 0.98568 0.99250 1.20354 0.78259 1.02135 0.98800 0.92762 0.92140 0.92149 0.88123 0.90374 0.86969 0.89057 0.89646 0.90277 0.88222 0.88879 0.86161 0.90795 0.87955 0.90749 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.94 37.16 0.33 -1.02 16 2 C -0.12 -1.47 2.33 -94.15 -0.22 -1.69 16 3 H 0.10 1.49 7.17 -51.93 -0.37 1.11 16 4 C -0.10 -1.23 5.35 37.41 0.20 -1.03 16 5 S -0.20 -3.31 19.49 -107.50 -2.09 -5.41 16 6 C -0.12 -1.78 7.13 39.15 0.28 -1.50 16 7 C 0.12 1.52 5.15 -4.00 -0.02 1.50 16 8 N -0.99 -14.62 2.38 -117.03 -0.28 -14.90 16 9 S 2.69 51.11 5.75 -107.50 -0.62 50.49 16 10 O -0.97 -20.39 16.19 -57.17 -0.93 -21.31 16 11 O -0.97 -19.85 15.99 -57.17 -0.91 -20.77 16 12 C -0.61 -13.06 5.11 -39.66 -0.20 -13.26 16 13 C -0.14 -2.93 8.91 -39.29 -0.35 -3.28 16 14 C -0.12 -2.64 10.02 -39.66 -0.40 -3.04 16 15 C -0.11 -2.82 8.70 -38.87 -0.34 -3.16 16 16 C 0.10 2.55 5.57 -106.83 -0.60 1.96 16 17 C -0.46 -11.85 9.05 -37.74 -0.34 -12.19 16 18 H 0.08 1.93 7.91 -52.48 -0.41 1.52 16 19 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 20 N -0.79 -19.69 10.97 55.55 0.61 -19.08 16 21 Si 0.91 18.34 29.59 -169.99 -5.03 13.30 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 25 C -0.11 -2.59 8.05 -38.87 -0.31 -2.90 16 26 C 0.13 1.56 4.73 -6.44 -0.03 1.53 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 29 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 30 H 0.10 1.18 7.93 -51.78 -0.41 0.77 16 31 H 0.08 0.81 7.17 -51.78 -0.37 0.44 16 32 H 0.11 1.85 6.71 -51.93 -0.35 1.51 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.08 7.49 -51.93 -0.39 0.69 16 35 H 0.08 0.78 6.83 -51.92 -0.35 0.42 16 36 H 0.10 1.94 7.60 -52.48 -0.40 1.55 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.12 3.06 6.18 -52.49 -0.32 2.74 16 39 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 40 H 0.10 2.33 6.74 -52.49 -0.35 1.97 16 41 H 0.07 0.69 7.72 -51.93 -0.40 0.29 16 42 H 0.09 1.18 7.08 -51.93 -0.37 0.82 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -29.56 351.26 -11.80 -41.36 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.75 Total: 7.31 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: -2.09 Total: -36.29 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.33 Total: -33.98 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.84 Total: -42.08 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 16 Polarization: 47.79 SS G_CDS: -2.71 Total: 45.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.56 -11.80 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.084 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds