Wall clock time and date at job start Sat Apr 11 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 108.75617 * 2 1 4 4 C 1.53491 * 108.79162 * 241.64824 * 2 1 3 5 5 S 1.78680 * 107.06896 * 156.90152 * 4 2 1 6 6 C 1.83139 * 105.77858 * 92.55673 * 5 4 2 7 7 C 1.56691 * 108.04285 * 321.71867 * 6 5 4 8 8 N 1.42789 * 113.64346 * 321.08698 * 7 6 5 9 9 S 1.65595 * 121.56529 * 284.07357 * 8 7 6 10 10 O 1.42097 * 106.40391 * 336.45666 * 9 8 7 11 11 O 1.42108 * 106.39934 * 203.53873 * 9 8 7 12 12 C 1.76197 * 107.21731 * 89.99889 * 9 8 7 13 13 C 1.38664 * 119.87466 * 90.00131 * 12 9 8 14 14 C 1.38613 * 120.49918 * 179.72025 * 13 12 9 15 15 C 1.37639 * 120.25034 * 0.27792 * 14 13 12 16 16 C 1.40693 * 119.74415 * 359.97438 * 15 14 13 17 17 C 1.41391 * 120.24543 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00306 * 155.16774 * 17 16 15 19 19 C 1.39944 * 119.99916 * 335.16661 * 17 16 15 20 20 N 1.30831 * 119.99982 * 342.35386 * 19 17 16 21 21 Si 1.86799 * 120.00181 * 162.35947 * 19 17 16 22 22 H 1.48494 * 109.47329 * 59.99943 * 21 19 17 23 23 H 1.48505 * 109.47096 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46963 * 299.99610 * 21 19 17 25 25 C 1.37593 * 119.88009 * 270.27510 * 12 9 8 26 26 C 1.44914 * 108.69506 * 118.25627 * 2 1 3 27 27 H 1.08996 * 109.46802 * 178.34776 * 1 2 3 28 28 H 1.08999 * 109.47347 * 298.34993 * 1 2 3 29 29 H 1.09000 * 109.46769 * 58.35504 * 1 2 3 30 30 H 1.09003 * 109.93246 * 37.51328 * 4 2 1 31 31 H 1.09003 * 110.00181 * 276.33221 * 4 2 1 32 32 H 1.08996 * 109.74880 * 202.08464 * 6 5 4 33 33 H 1.08997 * 109.74902 * 81.35115 * 6 5 4 34 34 H 1.08994 * 108.65033 * 200.01040 * 7 6 5 35 35 H 1.09007 * 108.64914 * 82.16046 * 7 6 5 36 36 H 1.08004 * 119.74920 * 359.97438 * 13 12 9 37 37 H 1.08000 * 119.86981 * 180.24893 * 14 13 12 38 38 H 1.07993 * 120.12719 * 179.97438 * 15 14 13 39 39 H 0.96995 * 119.99929 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.12645 * 0.02562 * 25 12 9 41 41 H 1.09002 * 109.17226 * 59.96718 * 26 2 1 42 42 H 1.09002 * 109.35678 * 300.75390 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8805 1.0321 0.0000 4 6 2.0245 -0.6900 -1.2788 5 16 3.6808 -0.0958 -1.5886 6 6 4.8005 -1.2947 -0.7744 7 6 4.1397 -1.7360 0.5761 8 7 3.4833 -0.6726 1.2669 9 16 4.3363 0.4775 2.0988 10 8 5.5882 -0.1098 2.4257 11 8 3.4487 1.0085 3.0733 12 6 4.6803 1.7880 0.9724 13 6 3.7860 2.8397 0.8425 14 6 4.0465 3.8803 -0.0354 15 6 5.1956 3.8771 -0.7930 16 6 6.1077 2.8125 -0.6733 17 6 7.2917 2.7988 -1.4460 18 1 8.1548 2.2484 -1.1019 19 6 7.3452 3.4984 -2.6569 20 7 6.2383 3.8701 -3.2470 21 14 8.9969 3.9014 -3.4306 22 1 9.7326 2.6424 -3.7110 23 1 8.7816 4.6415 -4.6999 24 1 9.7896 4.7404 -2.4963 25 6 5.8326 1.7612 0.2209 26 6 1.9945 -0.6498 1.2091 27 1 -0.3633 -1.0272 -0.0296 28 1 -0.3634 0.4880 0.9044 29 1 -0.3633 0.5392 -0.8749 30 1 1.3747 -0.4323 -2.1151 31 1 2.0376 -1.7709 -1.1380 32 1 5.7633 -0.8238 -0.5766 33 1 4.9399 -2.1637 -1.4173 34 1 4.9131 -2.1477 1.2244 35 1 3.4103 -2.5189 0.3678 36 1 2.8816 2.8502 1.4327 37 1 3.3449 4.6963 -0.1256 38 1 5.3964 4.6886 -1.4767 39 1 6.2754 4.3554 -4.0860 40 1 6.5255 0.9387 0.3201 41 1 1.6212 -1.6737 1.2313 42 1 1.6122 -0.1132 2.0774 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619499485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:03 Heat of formation + Delta-G solvation = -67.775316 kcal Electronic energy + Delta-G solvation = -27082.607516 eV Core-core repulsion = 23472.827190 eV Total energy + Delta-G solvation = -3609.780326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.47010 -39.26072 -38.35293 -36.91781 -35.56487 -35.49215 -31.81262 -31.52958 -31.16334 -28.24533 -27.23302 -26.89925 -24.17329 -23.42722 -22.69213 -21.54715 -20.09618 -19.51706 -18.42924 -17.63142 -17.56396 -17.27477 -16.86129 -16.50416 -16.22928 -15.76406 -15.20499 -15.14075 -14.92170 -14.87142 -14.29588 -14.22960 -13.88458 -13.67994 -13.56919 -13.29003 -13.23156 -13.14697 -13.03485 -12.99602 -12.75448 -12.72454 -12.56061 -12.49425 -12.21899 -11.95650 -11.87855 -11.50374 -11.42048 -11.24260 -11.05873 -10.39270 -10.04445 -9.65926 -9.38995 -8.63340 -8.27929 -6.33621 -0.49895 0.58210 0.92238 0.99069 1.37124 1.46447 1.50370 1.97944 2.05792 2.20079 2.64272 2.81561 3.35458 3.60239 3.68303 3.77125 3.83214 4.07937 4.20445 4.38319 4.42672 4.51560 4.54572 4.59972 4.69747 4.74786 4.76153 4.86988 4.92040 4.96169 5.01164 5.11431 5.15829 5.20625 5.29141 5.39977 5.45349 5.54540 5.68677 5.72575 6.01286 6.04415 6.22633 6.64248 6.91138 6.98345 8.33623 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.004964 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.903485 B = 5639.117022 C = 5986.149881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 H 0.061 0.939 4 C -0.074 4.074 5 S -0.296 6.296 6 C -0.110 4.110 7 C 0.113 3.887 8 N -0.982 5.982 9 S 2.707 3.293 10 O -0.994 6.994 11 O -0.986 6.986 12 C -0.616 4.616 13 C -0.133 4.133 14 C -0.123 4.123 15 C -0.137 4.137 16 C 0.076 3.924 17 C -0.501 4.501 18 H 0.071 0.929 19 C 0.042 3.958 20 N -0.819 5.819 21 Si 0.974 3.026 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.263 1.263 25 C -0.115 4.115 26 C 0.121 3.879 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.287 0.713 40 H 0.097 0.903 41 H 0.120 0.880 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.653 -11.397 2.344 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.140 4.140 3 H 0.079 0.921 4 C -0.222 4.222 5 S -0.067 6.067 6 C -0.260 4.260 7 C -0.016 4.016 8 N -0.817 5.817 9 S 2.802 3.198 10 O -0.984 6.984 11 O -0.977 6.977 12 C -0.706 4.706 13 C -0.153 4.153 14 C -0.142 4.142 15 C -0.157 4.157 16 C 0.073 3.927 17 C -0.531 4.531 18 H 0.089 0.911 19 C -0.174 4.174 20 N -0.445 5.445 21 Si 0.795 3.205 22 H -0.186 1.186 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.137 4.137 26 C -0.002 4.002 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.138 0.862 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.215 -10.493 2.470 14.851 hybrid contribution 0.780 0.053 -0.861 1.163 sum -9.435 -10.440 1.608 14.163 Atomic orbital electron populations 1.21819 0.91703 1.03500 1.02629 1.20526 0.98179 1.00765 0.94548 0.92073 1.23278 0.94238 1.03785 1.00942 1.87941 1.04303 1.41261 1.73242 1.25165 1.00093 1.01181 0.99547 1.21461 0.99180 0.89474 0.91443 1.57189 1.16270 1.40474 1.67805 1.01116 0.72110 0.73036 0.73505 1.93477 1.43903 1.77581 1.83440 1.93469 1.66213 1.79977 1.58002 1.29931 1.04287 1.17199 1.19148 1.20169 0.98687 0.95313 1.01172 1.20972 0.97364 0.98666 0.97169 1.21480 0.95927 0.98352 0.99953 1.17810 0.93096 0.90528 0.91253 1.19711 0.99084 1.29598 1.04669 0.91051 1.26586 1.01263 0.92830 0.96672 1.69849 1.30257 1.28970 1.15449 0.85375 0.77980 0.79378 0.77740 1.18633 1.19179 1.18739 1.20501 0.95664 0.97952 0.99554 1.20713 0.76074 1.04875 0.98545 0.90072 0.91716 0.92398 0.87600 0.87321 0.90125 0.86350 0.89259 0.85562 0.86169 0.86643 0.87747 0.90242 0.88513 0.86197 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 71.98 0.64 -1.42 16 2 C -0.12 -2.54 2.33 -13.08 -0.03 -2.57 16 3 H 0.06 1.79 7.17 -2.39 -0.02 1.78 16 4 C -0.07 -1.61 5.35 72.15 0.39 -1.22 16 5 S -0.30 -9.87 19.49 -56.49 -1.10 -10.97 16 6 C -0.11 -3.05 7.13 73.27 0.52 -2.53 16 7 C 0.11 2.55 5.15 88.35 0.46 3.00 16 8 N -0.98 -26.40 2.38 -524.17 -1.25 -27.64 16 9 S 2.71 100.67 5.75 -56.49 -0.32 100.34 16 10 O -0.99 -41.42 16.19 -128.00 -2.07 -43.49 16 11 O -0.99 -38.72 15.99 -128.00 -2.05 -40.77 16 12 C -0.62 -26.72 5.11 22.22 0.11 -26.61 16 13 C -0.13 -5.69 8.91 22.46 0.20 -5.49 16 14 C -0.12 -5.59 10.02 22.22 0.22 -5.37 16 15 C -0.14 -7.12 8.70 22.73 0.20 -6.92 16 16 C 0.08 4.07 5.57 -21.29 -0.12 3.95 16 17 C -0.50 -27.02 9.05 23.46 0.21 -26.81 16 18 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 19 C 0.04 2.11 5.14 85.26 0.44 2.54 16 20 N -0.82 -42.48 10.97 21.83 0.24 -42.24 16 21 Si 0.97 38.64 29.59 68.60 2.03 40.67 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 23 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 25 C -0.12 -5.62 8.05 22.73 0.18 -5.43 16 26 C 0.12 2.45 4.73 83.44 0.39 2.84 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 29 H 0.06 0.92 8.11 -2.39 -0.02 0.90 16 30 H 0.11 2.20 7.93 -2.48 -0.02 2.18 16 31 H 0.11 1.69 7.17 -2.48 -0.02 1.67 16 32 H 0.08 2.76 6.71 -2.39 -0.02 2.74 16 33 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.09 2.01 7.49 -2.39 -0.02 1.99 16 35 H 0.13 1.73 6.83 -2.38 -0.02 1.71 16 36 H 0.12 4.60 7.60 -2.91 -0.02 4.57 16 37 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.10 5.65 6.18 -2.91 -0.02 5.63 16 39 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 40 H 0.10 4.68 6.74 -2.91 -0.02 4.66 16 41 H 0.12 1.44 7.72 -2.39 -0.02 1.43 16 42 H 0.09 1.98 7.08 -2.39 -0.02 1.97 16 Total: -1.00 -68.15 351.26 0.33 -67.82 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 1.03 Total: 28.31 kcal Atomic # 6 Polarization: -75.85 SS G_CDS: 3.82 Total: -72.03 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -1.01 Total: -69.88 kcal Atomic # 8 Polarization: -80.14 SS G_CDS: -4.12 Total: -84.26 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Atomic # 16 Polarization: 90.80 SS G_CDS: -1.43 Total: 89.38 kcal Total: -68.15 0.33 -67.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.045 kcal (2) G-P(sol) polarization free energy of solvation -68.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds