Wall clock time and date at job start Sat Apr 11 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47044 * 2 1 4 4 O 1.45203 * 109.46600 * 240.00361 * 2 1 3 5 5 C 1.34669 * 117.00181 * 90.00149 * 4 2 1 6 6 O 1.21430 * 120.00069 * 359.97438 * 5 4 2 7 7 C 1.48063 * 120.00029 * 179.97438 * 5 4 2 8 8 C 1.39625 * 120.87819 * 179.97438 * 7 5 4 9 9 C 1.39041 * 118.95576 * 180.27870 * 8 7 5 10 10 N 1.39021 * 119.63090 * 179.75137 * 9 8 7 11 11 N 1.32365 * 120.73706 * 359.49392 * 9 8 7 12 12 C 1.31971 * 121.93900 * 0.49862 * 11 9 8 13 13 Cl 1.73602 * 119.51440 * 179.75029 * 12 11 9 14 14 C 1.38175 * 120.96831 * 359.76949 * 12 11 9 15 15 C 1.50693 * 109.47581 * 120.00264 * 2 1 3 16 16 O 1.21281 * 120.00369 * 119.99927 * 15 2 1 17 17 N 1.34776 * 119.99809 * 299.99792 * 15 2 1 18 18 C 1.46501 * 119.99991 * 0.02562 * 17 15 2 19 19 C 1.46499 * 119.99857 * 179.97438 * 17 15 2 20 20 C 1.50707 * 109.46932 * 90.00516 * 19 17 15 21 21 H 1.08006 * 119.99763 * 359.97438 * 20 19 17 22 22 C 1.37872 * 120.00192 * 179.97438 * 20 19 17 23 23 N 1.31512 * 120.00177 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00033 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47152 * 89.99914 * 24 22 20 26 26 H 1.48501 * 109.46948 * 209.99949 * 24 22 20 27 27 H 1.48502 * 109.47080 * 330.00136 * 24 22 20 28 28 H 1.09002 * 109.47581 * 59.99855 * 1 2 3 29 29 H 1.09002 * 109.47044 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46808 * 299.99557 * 1 2 3 31 31 H 1.08002 * 120.51869 * 359.97438 * 8 7 5 32 32 H 0.97007 * 120.00395 * 359.97438 * 10 9 8 33 33 H 0.97003 * 120.00059 * 179.97438 * 10 9 8 34 34 H 1.08008 * 120.41815 * 179.97438 * 14 12 11 35 35 H 1.09004 * 109.47391 * 89.99868 * 18 17 15 36 36 H 1.09004 * 109.46759 * 209.99726 * 18 17 15 37 37 H 1.08994 * 109.47038 * 329.99383 * 18 17 15 38 38 H 1.08999 * 109.47279 * 210.00290 * 19 17 15 39 39 H 1.08994 * 109.47794 * 330.00538 * 19 17 15 40 40 H 0.96998 * 120.00491 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1857 5 6 2.2177 0.0665 -2.2848 6 8 1.9969 1.2602 -2.2541 7 6 2.7109 -0.5633 -3.5307 8 6 2.9281 0.1978 -4.6810 9 6 3.3863 -0.4358 -5.8307 10 7 3.6023 0.3076 -6.9855 11 7 3.6240 -1.7379 -5.8366 12 6 3.4304 -2.4878 -4.7680 13 17 3.7566 -4.1910 -4.8479 14 6 2.9715 -1.9372 -3.5867 15 6 2.0324 -0.7104 1.2303 16 8 2.7297 -1.6965 1.1190 17 7 1.7069 -0.2500 2.4545 18 6 0.8642 0.9408 2.5889 19 6 2.1949 -0.9409 3.6506 20 6 3.5226 -0.3579 4.0609 21 1 3.9594 0.4466 3.4878 22 6 4.1797 -0.8514 5.1680 23 7 3.6481 -1.8313 5.8656 24 14 5.8258 -0.1291 5.6762 25 1 5.6026 0.9966 6.6187 26 1 6.6420 -1.1767 6.3407 27 1 6.5412 0.3670 4.4732 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.7383 1.2610 -4.6791 32 1 3.4330 1.2628 -6.9863 33 1 3.9222 -0.1289 -7.7905 34 1 2.8157 -2.5593 -2.7177 35 1 -0.1837 0.6425 2.6225 36 1 1.1220 1.4664 3.5085 37 1 1.0273 1.5996 1.7360 38 1 1.4769 -0.8154 4.4610 39 1 2.3157 -2.0021 3.4334 40 1 4.1101 -2.1783 6.6447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728627712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:16 Heat of formation + Delta-G solvation = -72.878871 kcal Electronic energy + Delta-G solvation = -26758.208921 eV Core-core repulsion = 22599.870368 eV Total energy + Delta-G solvation = -4158.338554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18110 -40.25863 -38.95171 -37.03535 -36.54244 -35.11741 -34.99716 -33.20175 -32.83162 -31.52403 -29.62957 -27.72374 -26.38083 -25.80711 -24.20916 -23.64174 -22.59196 -21.12697 -19.04473 -18.83869 -17.95777 -17.24590 -16.67512 -16.55168 -16.32719 -16.16758 -15.79955 -15.44957 -15.07472 -14.99280 -14.93821 -14.61257 -14.20069 -13.65507 -13.34330 -12.97964 -12.56627 -12.52787 -12.44442 -12.25287 -12.15058 -11.73343 -11.55861 -11.44047 -11.18966 -11.00619 -10.99778 -10.93808 -10.80347 -10.60143 -10.19219 -10.15614 -10.15022 -9.67902 -8.96895 -8.47027 -8.37146 -7.77103 -6.08064 -4.13159 0.16305 0.71827 1.43069 2.17587 2.29295 3.04415 3.20503 3.28740 3.34842 3.35868 3.40741 3.73734 4.24583 4.40565 4.42075 4.56346 4.68918 4.74234 4.88906 4.94102 5.02277 5.14728 5.26735 5.44586 5.57984 5.59411 5.68676 5.79446 5.85449 5.93753 6.17757 6.20771 6.63274 6.83660 6.93816 7.35634 7.40889 7.49189 7.57426 7.87703 8.17208 8.24295 8.80499 8.95498 9.52104 11.00099 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.002633 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.640791 B =10631.982352 C =11396.530046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 H 0.109 0.891 4 O -0.314 6.314 5 C 0.512 3.488 6 O -0.495 6.495 7 C -0.017 4.017 8 C -0.173 4.173 9 C 0.418 3.582 10 N -0.844 5.844 11 N -0.523 5.523 12 C 0.219 3.781 13 Cl -0.018 7.018 14 C -0.157 4.157 15 C 0.509 3.491 16 O -0.517 6.517 17 N -0.595 5.595 18 C 0.075 3.925 19 C 0.247 3.753 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.154 0.846 32 H 0.413 0.587 33 H 0.408 0.592 34 H 0.165 0.835 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.037 0.963 39 H 0.046 0.954 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.244 5.104 -23.218 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.012 3.988 3 H 0.126 0.874 4 O -0.228 6.228 5 C 0.355 3.645 6 O -0.384 6.384 7 C -0.026 4.026 8 C -0.198 4.198 9 C 0.180 3.820 10 N -0.389 5.389 11 N -0.244 5.244 12 C 0.055 3.945 13 Cl 0.011 6.989 14 C -0.181 4.181 15 C 0.293 3.707 16 O -0.393 6.393 17 N -0.328 5.328 18 C -0.069 4.069 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.172 0.828 32 H 0.244 0.756 33 H 0.238 0.762 34 H 0.182 0.818 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.595 4.251 -23.755 24.773 hybrid contribution 0.729 1.007 0.778 1.466 sum -4.867 5.259 -22.978 24.069 Atomic orbital electron populations 1.22423 0.92159 1.04331 1.04449 1.22722 0.95865 0.97731 0.82437 0.87376 1.86643 1.76209 1.40728 1.19264 1.20891 0.74662 0.84969 0.83951 1.90822 1.47727 1.15556 1.84253 1.19038 0.99047 0.93169 0.91363 1.21490 1.05102 1.02059 0.91186 1.17759 0.90482 0.86650 0.87115 1.42170 1.75050 1.10689 1.11015 1.66190 1.22250 1.05212 1.30743 1.21073 0.96237 0.87890 0.89296 1.98435 1.93514 1.08573 1.98368 1.21971 1.02296 0.94762 0.99039 1.19707 0.81807 0.85450 0.83769 1.90718 1.36819 1.25916 1.85807 1.48058 1.49795 1.28369 1.06618 1.21898 0.93975 0.88037 1.02974 1.19365 0.94392 0.93769 0.79652 1.21418 1.04843 1.19247 1.11324 0.92414 1.24926 0.97978 0.94888 0.96221 1.69923 1.39113 1.25929 1.18289 0.86488 0.83575 0.78697 0.78628 1.20605 1.21017 1.19861 0.91280 0.90791 0.88656 0.82816 0.75589 0.76173 0.81781 0.92947 0.90255 0.92279 0.94550 0.93574 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 9.19 37.16 0.34 -1.81 16 2 C 0.07 1.13 2.18 -27.89 -0.06 1.07 16 3 H 0.11 1.64 6.42 -51.93 -0.33 1.31 16 4 O -0.31 -5.08 8.77 -47.08 -0.41 -5.49 16 5 C 0.51 7.32 7.90 34.76 0.27 7.60 16 6 O -0.50 -7.45 15.70 -19.21 -0.30 -7.75 16 7 C -0.02 -0.21 5.90 -104.71 -0.62 -0.82 16 8 C -0.17 -1.72 9.51 -38.77 -0.37 -2.09 16 9 C 0.42 3.92 7.74 -155.07 -1.20 2.72 16 10 N -0.84 -4.61 9.07 31.11 0.28 -4.33 16 11 N -0.52 -5.88 10.34 -9.60 -0.10 -5.98 16 12 C 0.22 2.58 7.26 -17.52 -0.13 2.45 16 13 Cl -0.02 -0.19 29.10 -51.86 -1.51 -1.70 16 14 C -0.16 -1.90 9.46 -38.96 -0.37 -2.27 16 15 C 0.51 10.58 7.15 -10.99 -0.08 10.50 16 16 O -0.52 -13.11 16.08 -14.10 -0.23 -13.34 16 17 N -0.59 -12.24 2.86 -182.95 -0.52 -12.76 16 18 C 0.07 1.11 8.80 59.85 0.53 1.64 16 19 C 0.25 6.31 5.16 -5.19 -0.03 6.28 16 20 C -0.53 -14.83 9.39 -34.44 -0.32 -15.16 16 21 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 24 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.01 4.53 -51.93 -0.24 0.78 16 31 H 0.15 1.27 7.74 -52.49 -0.41 0.86 16 32 H 0.41 1.20 8.82 -40.82 -0.36 0.84 16 33 H 0.41 1.81 8.95 -40.82 -0.37 1.45 16 34 H 0.16 2.02 7.71 -52.48 -0.40 1.61 16 35 H 0.05 0.64 6.95 -51.93 -0.36 0.27 16 36 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 37 H 0.06 0.73 6.01 -51.93 -0.31 0.42 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -34.84 364.26 -8.10 -42.94 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.39 Total: -0.04 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -2.13 Total: 11.77 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.40 Total: -48.60 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.94 Total: -26.59 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.51 Total: -1.70 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.84 -8.10 -42.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728627712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.934 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds