Wall clock time and date at job start Sat Apr 11 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47044 * 2 1 4 4 O 1.45203 * 109.46600 * 240.00361 * 2 1 3 5 5 C 1.34669 * 117.00181 * 90.00149 * 4 2 1 6 6 O 1.21430 * 120.00069 * 359.97438 * 5 4 2 7 7 C 1.48063 * 120.00029 * 179.97438 * 5 4 2 8 8 C 1.39625 * 120.87819 * 179.97438 * 7 5 4 9 9 C 1.39041 * 118.95576 * 180.27870 * 8 7 5 10 10 N 1.39021 * 119.63090 * 179.75137 * 9 8 7 11 11 N 1.32365 * 120.73706 * 359.49392 * 9 8 7 12 12 C 1.31971 * 121.93900 * 0.49862 * 11 9 8 13 13 Cl 1.73602 * 119.51440 * 179.75029 * 12 11 9 14 14 C 1.38175 * 120.96831 * 359.76949 * 12 11 9 15 15 C 1.50693 * 109.47581 * 120.00264 * 2 1 3 16 16 O 1.21281 * 120.00369 * 119.99927 * 15 2 1 17 17 N 1.34776 * 119.99809 * 299.99792 * 15 2 1 18 18 C 1.46501 * 119.99991 * 0.02562 * 17 15 2 19 19 C 1.46499 * 119.99857 * 179.97438 * 17 15 2 20 20 C 1.50707 * 109.46932 * 90.00516 * 19 17 15 21 21 H 1.08006 * 119.99763 * 359.97438 * 20 19 17 22 22 C 1.37872 * 120.00192 * 179.97438 * 20 19 17 23 23 N 1.31512 * 120.00177 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00033 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47152 * 89.99914 * 24 22 20 26 26 H 1.48501 * 109.46948 * 209.99949 * 24 22 20 27 27 H 1.48502 * 109.47080 * 330.00136 * 24 22 20 28 28 H 1.09002 * 109.47581 * 59.99855 * 1 2 3 29 29 H 1.09002 * 109.47044 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46808 * 299.99557 * 1 2 3 31 31 H 1.08002 * 120.51869 * 359.97438 * 8 7 5 32 32 H 0.97007 * 120.00395 * 359.97438 * 10 9 8 33 33 H 0.97003 * 120.00059 * 179.97438 * 10 9 8 34 34 H 1.08008 * 120.41815 * 179.97438 * 14 12 11 35 35 H 1.09004 * 109.47391 * 89.99868 * 18 17 15 36 36 H 1.09004 * 109.46759 * 209.99726 * 18 17 15 37 37 H 1.08994 * 109.47038 * 329.99383 * 18 17 15 38 38 H 1.08999 * 109.47279 * 210.00290 * 19 17 15 39 39 H 1.08994 * 109.47794 * 330.00538 * 19 17 15 40 40 H 0.96998 * 120.00491 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1857 5 6 2.2177 0.0665 -2.2848 6 8 1.9969 1.2602 -2.2541 7 6 2.7109 -0.5633 -3.5307 8 6 2.9281 0.1978 -4.6810 9 6 3.3863 -0.4358 -5.8307 10 7 3.6023 0.3076 -6.9855 11 7 3.6240 -1.7379 -5.8366 12 6 3.4304 -2.4878 -4.7680 13 17 3.7566 -4.1910 -4.8479 14 6 2.9715 -1.9372 -3.5867 15 6 2.0324 -0.7104 1.2303 16 8 2.7297 -1.6965 1.1190 17 7 1.7069 -0.2500 2.4545 18 6 0.8642 0.9408 2.5889 19 6 2.1949 -0.9409 3.6506 20 6 3.5226 -0.3579 4.0609 21 1 3.9594 0.4466 3.4878 22 6 4.1797 -0.8514 5.1680 23 7 3.6481 -1.8313 5.8656 24 14 5.8258 -0.1291 5.6762 25 1 5.6026 0.9966 6.6187 26 1 6.6420 -1.1767 6.3407 27 1 6.5412 0.3670 4.4732 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.7383 1.2610 -4.6791 32 1 3.4330 1.2628 -6.9863 33 1 3.9222 -0.1289 -7.7905 34 1 2.8157 -2.5593 -2.7177 35 1 -0.1837 0.6425 2.6225 36 1 1.1220 1.4664 3.5085 37 1 1.0273 1.5996 1.7360 38 1 1.4769 -0.8154 4.4610 39 1 2.3157 -2.0021 3.4334 40 1 4.1101 -2.1783 6.6447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728627712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:15 Heat of formation + Delta-G solvation = -96.131952 kcal Electronic energy + Delta-G solvation = -26759.217251 eV Core-core repulsion = 22599.870368 eV Total energy + Delta-G solvation = -4159.346883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.23240 -41.31356 -40.42302 -37.92073 -37.73074 -36.72636 -35.82787 -34.92857 -33.99130 -32.88453 -30.39106 -29.57111 -27.76506 -26.85885 -25.79593 -24.45681 -24.15139 -22.25313 -20.51099 -19.86933 -18.83338 -18.70829 -18.24152 -17.85819 -17.43734 -17.27261 -17.15147 -16.61662 -16.40987 -16.08488 -15.87758 -15.73478 -15.66597 -14.85650 -14.77124 -14.32104 -14.16424 -13.72050 -13.56377 -13.38761 -13.32170 -13.30729 -13.02925 -12.83337 -12.59968 -12.44211 -12.41882 -12.22220 -12.08143 -11.99086 -11.81871 -11.71798 -11.00636 -10.98167 -10.64545 -10.63096 -9.51324 -9.06526 -8.23756 -6.38145 -0.74907 -0.12008 0.57962 1.04203 1.26330 1.36387 1.39551 1.49326 1.62018 2.24931 2.39614 2.43418 2.49168 3.06459 3.18213 3.38285 3.57859 3.70891 3.74300 3.83072 3.92102 4.09372 4.27392 4.34593 4.54117 4.62967 4.68669 4.84111 4.88422 4.95028 5.02709 5.09471 5.13169 5.22042 5.51268 5.78034 6.03499 6.04958 6.22746 6.33256 6.60235 6.70795 7.01211 7.20437 7.35961 8.83534 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.002633 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.640791 B =10631.982352 C =11396.530046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.080 3.920 3 H 0.121 0.879 4 O -0.333 6.333 5 C 0.515 3.485 6 O -0.503 6.503 7 C -0.030 4.030 8 C -0.160 4.160 9 C 0.421 3.579 10 N -0.822 5.822 11 N -0.535 5.535 12 C 0.214 3.786 13 Cl -0.018 7.018 14 C -0.171 4.171 15 C 0.499 3.501 16 O -0.577 6.577 17 N -0.598 5.598 18 C 0.066 3.934 19 C 0.260 3.740 20 C -0.546 4.546 21 H 0.052 0.948 22 C 0.010 3.990 23 N -0.926 5.926 24 Si 0.966 3.034 25 H -0.262 1.262 26 H -0.281 1.281 27 H -0.275 1.275 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.175 0.825 32 H 0.428 0.572 33 H 0.417 0.583 34 H 0.153 0.847 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.034 0.966 39 H 0.001 0.999 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.591 7.737 -24.846 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.022 3.978 3 H 0.139 0.861 4 O -0.248 6.248 5 C 0.359 3.641 6 O -0.391 6.391 7 C -0.039 4.039 8 C -0.186 4.186 9 C 0.181 3.819 10 N -0.368 5.368 11 N -0.258 5.258 12 C 0.050 3.950 13 Cl 0.011 6.989 14 C -0.195 4.195 15 C 0.286 3.714 16 O -0.457 6.457 17 N -0.331 5.331 18 C -0.075 4.075 19 C 0.139 3.861 20 C -0.584 4.584 21 H 0.071 0.929 22 C -0.189 4.189 23 N -0.566 5.566 24 Si 0.790 3.210 25 H -0.186 1.186 26 H -0.206 1.206 27 H -0.200 1.200 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.133 0.867 31 H 0.193 0.807 32 H 0.262 0.738 33 H 0.248 0.752 34 H 0.171 0.829 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.981 6.957 -25.418 27.023 hybrid contribution 0.822 0.223 1.182 1.457 sum -5.159 7.181 -24.236 25.798 Atomic orbital electron populations 1.22445 0.88894 1.04751 1.06443 1.22642 0.98068 0.96825 0.80277 0.86134 1.86648 1.76690 1.41625 1.19804 1.21152 0.74208 0.84846 0.83860 1.90801 1.48303 1.15661 1.84384 1.19007 1.00289 0.93337 0.91260 1.21696 1.03711 1.02810 0.90352 1.17965 0.89629 0.86292 0.88047 1.42186 1.73340 1.11310 1.09971 1.66248 1.22998 1.06033 1.30477 1.21055 0.96483 0.88073 0.89383 1.98427 1.93521 1.08624 1.98376 1.21844 1.03666 0.94954 0.99015 1.20615 0.80748 0.84896 0.85158 1.90680 1.39508 1.28680 1.86835 1.48027 1.50114 1.29598 1.05328 1.22271 0.94745 0.86270 1.04238 1.18848 0.93942 0.91811 0.81490 1.21693 1.05990 1.19254 1.11495 0.92944 1.25816 1.01686 0.95197 0.96240 1.70034 1.40723 1.27035 1.18773 0.85444 0.78833 0.78391 0.78322 1.18645 1.20632 1.20003 0.89108 0.91246 0.86691 0.80731 0.73802 0.75195 0.82945 0.89511 0.90695 0.89112 0.94782 0.98073 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.70 9.19 71.98 0.66 -3.04 16 2 C 0.08 2.46 2.18 29.85 0.07 2.53 16 3 H 0.12 3.42 6.42 -2.39 -0.02 3.40 16 4 O -0.33 -10.77 8.77 -49.40 -0.43 -11.20 16 5 C 0.52 14.27 7.90 70.43 0.56 14.83 16 6 O -0.50 -14.11 15.70 20.06 0.31 -13.79 16 7 C -0.03 -0.71 5.90 -19.92 -0.12 -0.83 16 8 C -0.16 -2.85 9.51 22.80 0.22 -2.63 16 9 C 0.42 6.99 7.74 133.04 1.03 8.02 16 10 N -0.82 -6.49 9.07 -55.50 -0.50 -7.00 16 11 N -0.54 -11.41 10.34 -184.28 -1.91 -13.31 16 12 C 0.21 5.01 7.26 84.66 0.62 5.62 16 13 Cl -0.02 -0.40 29.10 -2.72 -0.08 -0.48 16 14 C -0.17 -4.21 9.46 22.67 0.21 -4.00 16 15 C 0.50 21.16 7.15 87.65 0.63 21.79 16 16 O -0.58 -30.84 16.08 15.76 0.25 -30.59 16 17 N -0.60 -24.79 2.86 -851.13 -2.43 -27.22 16 18 C 0.07 1.82 8.80 127.77 1.12 2.95 16 19 C 0.26 13.78 5.16 85.64 0.44 14.22 16 20 C -0.55 -31.26 9.39 25.60 0.24 -31.02 16 21 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 22 C 0.01 0.57 5.46 84.65 0.46 1.03 16 23 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 24 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 25 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 2.03 4.53 -2.39 -0.01 2.02 16 31 H 0.18 2.31 7.74 -2.91 -0.02 2.29 16 32 H 0.43 0.95 8.82 -92.70 -0.82 0.14 16 33 H 0.42 2.46 8.95 -92.71 -0.83 1.63 16 34 H 0.15 4.03 7.71 -2.91 -0.02 4.01 16 35 H 0.09 1.83 6.95 -2.38 -0.02 1.81 16 36 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 37 H 0.09 1.94 6.01 -2.39 -0.01 1.92 16 38 H 0.03 1.79 8.07 -2.39 -0.02 1.78 16 39 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 40 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -78.75 364.26 3.15 -75.60 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -0.52 Total: 6.94 kcal Atomic # 6 Polarization: 23.33 SS G_CDS: 6.14 Total: 29.47 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -4.56 Total: -102.81 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: 0.14 Total: -55.58 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -78.75 3.15 -75.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728627712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.530 kcal (2) G-P(sol) polarization free energy of solvation -78.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds