Wall clock time and date at job start Sat Apr 11 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47416 * 2 1 4 4 C 1.46497 * 120.00423 * 270.00050 * 3 2 1 5 5 C 1.50693 * 109.47296 * 269.99781 * 4 3 2 6 6 H 1.08008 * 119.99968 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00453 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99802 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00336 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47092 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47458 * 120.00065 * 9 7 5 12 12 H 1.48501 * 109.47173 * 240.00214 * 9 7 5 13 13 C 1.34776 * 119.99803 * 89.99560 * 3 2 1 14 14 O 1.21290 * 119.99975 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00247 * 0.02562 * 13 3 2 16 16 O 1.45202 * 109.47570 * 179.97438 * 15 13 3 17 17 C 1.34668 * 117.00088 * 180.02562 * 16 15 13 18 18 O 1.21420 * 120.00308 * 0.02562 * 17 16 15 19 19 C 1.48076 * 119.99753 * 180.02562 * 17 16 15 20 20 C 1.39618 * 120.87679 * 180.22526 * 19 17 16 21 21 C 1.39044 * 118.95319 * 180.28114 * 20 19 17 22 22 N 1.39023 * 119.62948 * 179.74604 * 21 20 19 23 23 N 1.32366 * 120.73696 * 359.76091 * 21 20 19 24 24 C 1.31963 * 121.94136 * 359.97438 * 23 21 20 25 25 Cl 1.73596 * 119.51674 * 179.97438 * 24 23 21 26 26 C 1.38183 * 120.97099 * 359.97438 * 24 23 21 27 27 H 1.09003 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47370 * 299.99878 * 1 2 3 29 29 H 1.09003 * 109.47154 * 60.00299 * 1 2 3 30 30 H 1.09002 * 109.47080 * 239.99812 * 2 1 3 31 31 H 1.09003 * 109.46983 * 120.00228 * 2 1 3 32 32 H 1.09012 * 109.46876 * 29.99832 * 4 3 2 33 33 H 1.09000 * 109.47499 * 149.99202 * 4 3 2 34 34 H 0.96994 * 119.99946 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.47053 * 60.00147 * 15 13 3 36 36 H 1.09000 * 109.47534 * 300.00301 * 15 13 3 37 37 H 1.07996 * 120.52040 * 0.02562 * 20 19 17 38 38 H 0.96998 * 120.00287 * 180.02562 * 22 21 20 39 39 H 0.97003 * 119.99980 * 0.02562 * 22 21 20 40 40 H 1.08002 * 120.42121 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3897 -2.8778 8 7 3.3490 3.1250 -3.6185 9 14 5.9136 2.0968 -3.4167 10 1 6.6012 1.2415 -2.4162 11 1 5.9217 1.4173 -4.7371 12 1 6.6205 3.3982 -3.5254 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1673 15 6 1.9922 1.3059 2.4723 16 8 2.3071 2.1953 3.5760 17 6 2.1365 1.7096 4.8204 18 8 1.7361 0.5744 4.9795 19 6 2.4371 2.5601 5.9947 20 6 2.2712 2.0737 7.2929 21 6 2.5598 2.9088 8.3666 22 7 2.3945 2.4407 9.6651 23 7 2.9898 4.1444 8.1660 24 6 3.1631 4.6352 6.9534 25 17 3.7294 6.2651 6.7632 26 6 2.9002 3.8708 5.8326 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1383 34 1 3.6751 3.5155 -4.4443 35 1 2.6228 0.4187 2.5299 36 1 0.9444 1.0113 2.5302 37 1 1.9202 1.0662 7.4604 38 1 2.5939 3.0187 10.4181 39 1 2.0798 1.5360 9.8182 40 1 3.0447 4.2816 4.8443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728632089.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:18 Heat of formation + Delta-G solvation = -102.607508 kcal Electronic energy + Delta-G solvation = -26424.070197 eV Core-core repulsion = 22264.442513 eV Total energy + Delta-G solvation = -4159.627684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.13553 -41.20255 -40.44003 -37.90345 -37.70591 -36.96841 -35.80095 -34.92774 -33.91736 -31.73498 -30.74914 -30.33484 -28.52873 -26.35412 -24.80887 -24.44514 -24.10097 -22.36327 -20.34404 -19.76047 -18.84609 -18.61745 -18.23584 -17.92272 -17.75492 -17.34084 -17.13905 -16.61843 -16.29609 -16.13968 -15.86419 -15.73982 -15.66696 -14.83466 -14.71629 -14.53818 -13.96318 -13.94024 -13.59204 -13.33408 -13.30766 -13.27230 -13.05301 -12.68859 -12.50261 -12.42460 -12.23239 -12.11420 -12.07243 -11.82147 -11.79218 -11.68295 -10.99667 -10.97043 -10.72465 -10.64218 -9.52988 -9.05381 -8.22508 -6.36571 -0.73601 -0.10932 0.59401 1.04380 1.26256 1.37539 1.40186 1.51434 1.63349 2.26128 2.40804 2.45130 2.50155 3.07860 3.22666 3.41975 3.59164 3.74441 3.86585 3.93591 3.97246 4.13691 4.17251 4.31909 4.40150 4.61333 4.84108 4.88802 4.96889 5.03036 5.04470 5.05902 5.22063 5.38693 5.55564 5.80669 6.05220 6.06411 6.23819 6.33955 6.62859 6.73213 7.02572 7.22529 7.37805 8.85115 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.002580 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.545448 B =10850.567721 C =12282.974862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.498 3.502 14 O -0.576 6.576 15 C 0.061 3.939 16 O -0.338 6.338 17 C 0.518 3.482 18 O -0.501 6.501 19 C -0.029 4.029 20 C -0.158 4.158 21 C 0.421 3.579 22 N -0.822 5.822 23 N -0.536 5.536 24 C 0.213 3.787 25 Cl -0.020 7.020 26 C -0.171 4.171 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.030 0.970 33 H 0.000 1.000 34 H 0.267 0.733 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.177 0.823 38 H 0.416 0.584 39 H 0.428 0.572 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 -6.955 25.836 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.209 1.209 13 C 0.286 3.714 14 O -0.455 6.455 15 C -0.015 4.015 16 O -0.253 6.253 17 C 0.362 3.638 18 O -0.390 6.390 19 C -0.038 4.038 20 C -0.184 4.184 21 C 0.180 3.820 22 N -0.368 5.368 23 N -0.258 5.258 24 C 0.050 3.950 25 Cl 0.009 6.991 26 C -0.196 4.196 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.048 0.952 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.194 0.806 38 H 0.248 0.752 39 H 0.262 0.738 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.881 -5.981 26.337 27.445 hybrid contribution 0.677 -0.085 -1.308 1.475 sum -4.204 -6.066 25.029 26.095 Atomic orbital electron populations 1.22183 0.94328 1.03796 1.01872 1.21883 0.95546 0.80930 1.04512 1.48197 1.63600 1.15289 1.05629 1.18792 0.95558 0.91702 0.79794 1.21728 0.97807 1.32031 1.06491 0.92692 1.25835 1.02290 0.94492 0.96471 1.70049 1.37651 1.34213 1.14820 0.85380 0.79126 0.77970 0.78408 1.19065 1.19459 1.20904 1.20516 0.78435 0.86686 0.85806 1.90697 1.47016 1.20101 1.87712 1.22958 1.05245 0.91913 0.81367 1.86598 1.78649 1.45388 1.14664 1.21073 0.74299 0.85400 0.83050 1.90820 1.42410 1.18999 1.86758 1.18994 1.00605 0.92981 0.91262 1.21695 1.04629 1.02934 0.89129 1.17981 0.89522 0.86608 0.87867 1.42188 1.73486 1.19162 1.01982 1.66239 1.20052 1.14714 1.24822 1.21052 0.96559 0.88755 0.88678 1.98430 1.86715 1.17172 1.96813 1.21857 1.03626 0.93831 1.00252 0.88379 0.92252 0.93834 0.90073 0.88145 0.95249 0.98203 0.92397 0.85818 0.85384 0.80572 0.75227 0.73775 0.83047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 10.24 71.98 0.74 -3.04 16 2 C 0.09 2.65 5.93 86.38 0.51 3.17 16 3 N -0.59 -24.41 2.46 -826.16 -2.03 -26.43 16 4 C 0.26 13.88 5.16 85.63 0.44 14.32 16 5 C -0.54 -30.80 9.39 25.60 0.24 -30.56 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.47 5.46 84.66 0.46 0.93 16 8 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 9 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.50 20.57 7.75 87.66 0.68 21.25 16 14 O -0.58 -30.07 16.08 15.74 0.25 -29.82 16 15 C 0.06 1.79 4.50 71.23 0.32 2.11 16 16 O -0.34 -10.50 9.11 -49.39 -0.45 -10.95 16 17 C 0.52 13.41 7.92 70.43 0.56 13.97 16 18 O -0.50 -13.06 16.23 20.09 0.33 -12.73 16 19 C -0.03 -0.66 5.90 -19.92 -0.12 -0.78 16 20 C -0.16 -2.62 9.50 22.80 0.22 -2.40 16 21 C 0.42 6.62 7.74 133.04 1.03 7.65 16 22 N -0.82 -5.84 9.07 -55.50 -0.50 -6.34 16 23 N -0.54 -11.13 10.34 -184.28 -1.91 -13.04 16 24 C 0.21 4.92 7.26 84.66 0.62 5.53 16 25 Cl -0.02 -0.45 29.10 -2.72 -0.08 -0.53 16 26 C -0.17 -4.14 9.46 22.67 0.21 -3.93 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16 31 H 0.10 2.15 6.44 -2.39 -0.02 2.14 16 32 H 0.03 1.57 8.07 -2.38 -0.02 1.55 16 33 H 0.00 -0.01 7.42 -2.39 -0.02 -0.03 16 34 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.12 2.99 7.40 -2.39 -0.02 2.98 16 36 H 0.13 2.96 7.18 -2.39 -0.02 2.94 16 37 H 0.18 2.07 7.74 -2.91 -0.02 2.05 16 38 H 0.42 2.20 8.95 -92.71 -0.83 1.37 16 39 H 0.43 0.57 8.82 -92.71 -0.82 -0.25 16 40 H 0.15 4.00 7.71 -2.91 -0.02 3.98 16 Total: -1.00 -77.80 370.19 3.31 -74.49 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -0.53 Total: 5.82 kcal Atomic # 6 Polarization: 22.32 SS G_CDS: 5.91 Total: 28.23 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -4.15 Total: -101.23 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: 0.13 Total: -53.50 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -77.80 3.31 -74.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728632089.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.113 kcal (2) G-P(sol) polarization free energy of solvation -77.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds