Wall clock time and date at job start Sat Apr 11 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 O 1.45197 * 109.47339 * 120.00165 * 2 1 3 5 5 C 1.34749 * 116.99899 * 270.00152 * 4 2 1 6 6 O 1.21518 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.47404 * 119.99871 * 180.02562 * 5 4 2 8 8 C 1.39637 * 120.47871 * 359.97438 * 7 5 4 9 9 N 1.31654 * 120.53438 * 179.97438 * 8 7 5 10 10 C 1.32613 * 121.65258 * 0.02562 * 9 8 7 11 11 N 1.38481 * 119.53303 * 179.97438 * 10 9 8 12 12 C 1.39479 * 120.92557 * 359.97438 * 10 9 8 13 13 Cl 1.73589 * 120.31735 * 180.02562 * 12 10 9 14 14 C 1.36952 * 119.36228 * 359.74505 * 12 10 9 15 15 C 1.50702 * 109.47230 * 240.00733 * 2 1 3 16 16 O 1.21283 * 119.99478 * 244.99823 * 15 2 1 17 17 N 1.34773 * 120.00430 * 64.99170 * 15 2 1 18 18 C 1.46506 * 119.99969 * 0.02562 * 17 15 2 19 19 C 1.46499 * 120.00036 * 179.72648 * 17 15 2 20 20 C 1.50703 * 109.47126 * 270.27831 * 19 17 15 21 21 H 1.08002 * 119.99820 * 359.97438 * 20 19 17 22 22 C 1.37876 * 119.99889 * 180.02562 * 20 19 17 23 23 N 1.31518 * 120.00192 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00045 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46767 * 89.99886 * 24 22 20 26 26 H 1.48493 * 109.47240 * 210.00027 * 24 22 20 27 27 H 1.48500 * 109.46974 * 329.99973 * 24 22 20 28 28 H 1.08998 * 109.46972 * 299.99294 * 1 2 3 29 29 H 1.09005 * 109.47553 * 60.00228 * 1 2 3 30 30 H 1.09002 * 109.46624 * 179.97438 * 1 2 3 31 31 H 1.07998 * 119.73503 * 0.02562 * 8 7 5 32 32 H 0.97001 * 120.00659 * 359.97438 * 11 10 9 33 33 H 0.97010 * 119.99645 * 179.97438 * 11 10 9 34 34 H 1.08001 * 120.75689 * 180.25244 * 14 12 10 35 35 H 1.08999 * 109.46892 * 269.72362 * 18 17 15 36 36 H 1.09000 * 109.46803 * 29.71536 * 18 17 15 37 37 H 1.09000 * 109.47214 * 149.72329 * 18 17 15 38 38 H 1.08994 * 109.47173 * 30.28203 * 19 17 15 39 39 H 1.09005 * 109.47077 * 150.28374 * 19 17 15 40 40 H 0.96995 * 119.99689 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0669 2.2853 6 8 1.9968 1.2614 2.2547 7 6 2.7092 -0.5602 3.5256 8 6 2.9660 -1.9319 3.5721 9 7 3.4053 -2.4930 4.6791 10 6 3.6181 -1.7860 5.7807 11 7 4.0802 -2.4214 6.9210 12 6 3.3831 -0.4114 5.8067 13 17 3.6677 0.4989 7.2571 14 6 2.9311 0.2142 4.6753 15 6 2.0324 -0.7103 -1.2306 16 8 2.6530 -1.7465 -1.1216 17 7 1.7918 -0.1940 -2.4521 18 6 1.0425 1.0580 -2.5836 19 6 2.2854 -0.8814 -3.6479 20 6 3.6681 -0.3821 -3.9797 21 1 4.1325 0.3722 -3.3618 22 6 4.3397 -0.8874 -5.0726 23 7 3.7739 -1.8055 -5.8254 24 14 6.0533 -0.2679 -5.4843 25 1 7.0628 -1.1059 -4.7887 26 1 6.2694 -0.3480 -6.9513 27 1 6.1897 1.1425 -5.0402 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.8038 -2.5374 2.6926 32 1 4.2456 -3.3771 6.9105 33 1 4.2386 -1.9106 7.7304 34 1 2.7456 1.2781 4.6692 35 1 -0.0212 0.8370 -2.6727 36 1 1.2123 1.6773 -1.7029 37 1 1.3786 1.5909 -3.4731 38 1 2.3218 -1.9546 -3.4611 39 1 1.6162 -0.6807 -4.4846 40 1 4.2463 -2.1607 -6.5945 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728632506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:21 Heat of formation + Delta-G solvation = -79.759350 kcal Electronic energy + Delta-G solvation = -26718.624911 eV Core-core repulsion = 22559.987997 eV Total energy + Delta-G solvation = -4158.636913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.12637 -40.21121 -38.86381 -37.08812 -36.42724 -35.35417 -34.92358 -32.90329 -32.75230 -31.68309 -30.02629 -27.70746 -26.18387 -25.06630 -24.26540 -23.98612 -22.51787 -21.07142 -18.91843 -18.67397 -18.28222 -17.75016 -16.84805 -16.53707 -16.20859 -16.02984 -15.65112 -15.33945 -15.12696 -15.03136 -14.57872 -14.23818 -13.98308 -13.55167 -13.39179 -13.22434 -12.89336 -12.52987 -12.39124 -12.19176 -12.10837 -11.71633 -11.67052 -11.46465 -11.36665 -11.20618 -10.92208 -10.86548 -10.71350 -10.58258 -10.17522 -10.11859 -9.99781 -9.65903 -8.91889 -8.46194 -8.45124 -7.73632 -6.06388 -4.11304 0.31450 0.68961 1.54271 2.34888 2.45064 2.83695 3.24966 3.31302 3.37449 3.39458 3.40668 3.84841 4.01196 4.41671 4.43996 4.50518 4.60031 4.80624 4.85199 4.98183 5.08909 5.23110 5.28422 5.47799 5.59685 5.66396 5.68619 5.85389 5.88846 6.00007 6.21914 6.36475 6.50865 6.77103 6.97411 7.38252 7.45425 7.54033 7.68654 7.89674 8.19411 8.28239 8.83727 8.98582 9.53879 11.01742 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.002408 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.044053 B =11625.000154 C =12297.034017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.072 3.928 3 H 0.107 0.893 4 O -0.321 6.321 5 C 0.521 3.479 6 O -0.511 6.511 7 C -0.229 4.229 8 C 0.228 3.772 9 N -0.535 5.535 10 C 0.447 3.553 11 N -0.830 5.830 12 C -0.173 4.173 13 Cl -0.054 7.054 14 C 0.041 3.959 15 C 0.509 3.491 16 O -0.519 6.519 17 N -0.595 5.595 18 C 0.076 3.924 19 C 0.247 3.753 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.898 3.102 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.187 0.813 32 H 0.412 0.588 33 H 0.413 0.587 34 H 0.158 0.842 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.036 0.964 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.432 3.613 24.961 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.125 0.875 4 O -0.236 6.236 5 C 0.366 3.634 6 O -0.401 6.401 7 C -0.236 4.236 8 C 0.068 3.932 9 N -0.253 5.253 10 C 0.206 3.794 11 N -0.372 5.372 12 C -0.207 4.207 13 Cl -0.026 7.026 14 C 0.015 3.985 15 C 0.293 3.707 16 O -0.395 6.395 17 N -0.329 5.329 18 C -0.068 4.068 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.199 1.199 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.204 0.796 32 H 0.243 0.757 33 H 0.245 0.755 34 H 0.176 0.824 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.950 2.483 24.959 25.566 hybrid contribution 0.953 1.371 0.060 1.671 sum -3.997 3.854 25.018 25.627 Atomic orbital electron populations 1.22287 0.92275 1.04110 1.04087 1.22660 0.95759 0.97684 0.82534 0.87515 1.86622 1.76747 1.40901 1.19372 1.20614 0.74256 0.84943 0.83591 1.90826 1.49144 1.15728 1.84402 1.19693 1.15259 0.95442 0.93196 1.23243 0.84177 0.91321 0.94473 1.67613 1.21206 1.37611 0.98881 1.18323 0.86689 0.86602 0.87752 1.42376 1.71082 1.12882 1.10848 1.20716 1.16897 0.91525 0.91513 1.98361 1.95249 1.73629 1.35377 1.21075 0.87766 1.01238 0.88385 1.19745 0.81188 0.85966 0.83806 1.90706 1.39613 1.23383 1.85748 1.48070 1.53924 1.23998 1.06909 1.21852 0.95382 0.86734 1.02847 1.19354 0.94232 0.93859 0.79735 1.21424 1.00913 1.23138 1.11275 0.92420 1.24929 0.98208 0.94893 0.96000 1.69929 1.38032 1.28187 1.17152 0.86491 0.84365 0.79200 0.77340 1.20499 1.21114 1.19901 0.91233 0.89249 0.90879 0.79640 0.75672 0.75468 0.82403 0.93082 0.92309 0.90299 0.93608 0.94583 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.27 37.16 0.34 -1.79 16 2 C 0.07 1.17 2.17 -27.88 -0.06 1.11 16 3 H 0.11 1.67 6.15 -51.93 -0.32 1.35 16 4 O -0.32 -5.20 8.68 -47.29 -0.41 -5.61 16 5 C 0.52 7.58 7.87 34.46 0.27 7.85 16 6 O -0.51 -8.06 15.67 -19.28 -0.30 -8.36 16 7 C -0.23 -2.78 5.89 -104.84 -0.62 -3.40 16 8 C 0.23 2.64 10.79 -17.11 -0.18 2.45 16 9 N -0.53 -5.91 10.38 -12.10 -0.13 -6.04 16 10 C 0.45 4.20 7.73 -155.22 -1.20 3.00 16 11 N -0.83 -5.00 9.01 31.13 0.28 -4.72 16 12 C -0.17 -1.61 6.32 -39.59 -0.25 -1.87 16 13 Cl -0.05 -0.41 27.57 -51.86 -1.43 -1.84 16 14 C 0.04 0.43 9.44 -39.24 -0.37 0.06 16 15 C 0.51 10.66 7.10 -10.99 -0.08 10.58 16 16 O -0.52 -13.14 16.09 -14.05 -0.23 -13.37 16 17 N -0.60 -12.40 2.86 -182.95 -0.52 -12.92 16 18 C 0.08 1.15 8.92 59.85 0.53 1.69 16 19 C 0.25 6.35 5.16 -5.19 -0.03 6.32 16 20 C -0.53 -14.90 9.38 -34.44 -0.32 -15.22 16 21 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 24 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.99 5.12 -51.93 -0.27 0.72 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.19 2.08 7.61 -52.49 -0.40 1.68 16 32 H 0.41 1.91 8.95 -40.82 -0.37 1.55 16 33 H 0.41 1.80 7.45 -40.82 -0.30 1.50 16 34 H 0.16 1.53 7.73 -52.49 -0.41 1.12 16 35 H 0.05 0.64 7.04 -51.93 -0.37 0.27 16 36 H 0.06 0.76 6.06 -51.93 -0.31 0.44 16 37 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 38 H 0.05 1.33 7.43 -51.93 -0.39 0.94 16 39 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 361.98 15.07 5.46 5.46 Total: -1.00 -34.72 361.98 -7.98 -42.70 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.35 Total: 1.06 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: -2.06 Total: 12.44 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.37 Total: -49.30 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.94 Total: -27.34 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.43 Total: -1.84 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.72 -7.98 -42.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728632506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.061 kcal (2) G-P(sol) polarization free energy of solvation -34.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds