Wall clock time and date at job start Sat Apr 11 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 O 1.45197 * 109.47339 * 120.00165 * 2 1 3 5 5 C 1.34749 * 116.99899 * 270.00152 * 4 2 1 6 6 O 1.21518 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.47404 * 119.99871 * 180.02562 * 5 4 2 8 8 C 1.39637 * 120.47871 * 359.97438 * 7 5 4 9 9 N 1.31654 * 120.53438 * 179.97438 * 8 7 5 10 10 C 1.32613 * 121.65258 * 0.02562 * 9 8 7 11 11 N 1.38481 * 119.53303 * 179.97438 * 10 9 8 12 12 C 1.39479 * 120.92557 * 359.97438 * 10 9 8 13 13 Cl 1.73589 * 120.31735 * 180.02562 * 12 10 9 14 14 C 1.36952 * 119.36228 * 359.74505 * 12 10 9 15 15 C 1.50702 * 109.47230 * 240.00733 * 2 1 3 16 16 O 1.21283 * 119.99478 * 244.99823 * 15 2 1 17 17 N 1.34773 * 120.00430 * 64.99170 * 15 2 1 18 18 C 1.46506 * 119.99969 * 0.02562 * 17 15 2 19 19 C 1.46499 * 120.00036 * 179.72648 * 17 15 2 20 20 C 1.50703 * 109.47126 * 270.27831 * 19 17 15 21 21 H 1.08002 * 119.99820 * 359.97438 * 20 19 17 22 22 C 1.37876 * 119.99889 * 180.02562 * 20 19 17 23 23 N 1.31518 * 120.00192 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00045 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46767 * 89.99886 * 24 22 20 26 26 H 1.48493 * 109.47240 * 210.00027 * 24 22 20 27 27 H 1.48500 * 109.46974 * 329.99973 * 24 22 20 28 28 H 1.08998 * 109.46972 * 299.99294 * 1 2 3 29 29 H 1.09005 * 109.47553 * 60.00228 * 1 2 3 30 30 H 1.09002 * 109.46624 * 179.97438 * 1 2 3 31 31 H 1.07998 * 119.73503 * 0.02562 * 8 7 5 32 32 H 0.97001 * 120.00659 * 359.97438 * 11 10 9 33 33 H 0.97010 * 119.99645 * 179.97438 * 11 10 9 34 34 H 1.08001 * 120.75689 * 180.25244 * 14 12 10 35 35 H 1.08999 * 109.46892 * 269.72362 * 18 17 15 36 36 H 1.09000 * 109.46803 * 29.71536 * 18 17 15 37 37 H 1.09000 * 109.47214 * 149.72329 * 18 17 15 38 38 H 1.08994 * 109.47173 * 30.28203 * 19 17 15 39 39 H 1.09005 * 109.47077 * 150.28374 * 19 17 15 40 40 H 0.96995 * 119.99689 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0669 2.2853 6 8 1.9968 1.2614 2.2547 7 6 2.7092 -0.5602 3.5256 8 6 2.9660 -1.9319 3.5721 9 7 3.4053 -2.4930 4.6791 10 6 3.6181 -1.7860 5.7807 11 7 4.0802 -2.4214 6.9210 12 6 3.3831 -0.4114 5.8067 13 17 3.6677 0.4989 7.2571 14 6 2.9311 0.2142 4.6753 15 6 2.0324 -0.7103 -1.2306 16 8 2.6530 -1.7465 -1.1216 17 7 1.7918 -0.1940 -2.4521 18 6 1.0425 1.0580 -2.5836 19 6 2.2854 -0.8814 -3.6479 20 6 3.6681 -0.3821 -3.9797 21 1 4.1325 0.3722 -3.3618 22 6 4.3397 -0.8874 -5.0726 23 7 3.7739 -1.8055 -5.8254 24 14 6.0533 -0.2679 -5.4843 25 1 7.0628 -1.1059 -4.7887 26 1 6.2694 -0.3480 -6.9513 27 1 6.1897 1.1425 -5.0402 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.8038 -2.5374 2.6926 32 1 4.2456 -3.3771 6.9105 33 1 4.2386 -1.9106 7.7304 34 1 2.7456 1.2781 4.6692 35 1 -0.0212 0.8370 -2.6727 36 1 1.2123 1.6773 -1.7029 37 1 1.3786 1.5909 -3.4731 38 1 2.3218 -1.9546 -3.4611 39 1 1.6162 -0.6807 -4.4846 40 1 4.2463 -2.1607 -6.5945 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728632506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:21 Heat of formation + Delta-G solvation = -102.582136 kcal Electronic energy + Delta-G solvation = -26719.614581 eV Core-core repulsion = 22559.987997 eV Total energy + Delta-G solvation = -4159.626584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.12998 -41.30962 -40.34743 -37.78305 -37.65032 -36.67326 -36.07889 -34.88646 -33.57176 -33.05763 -30.89285 -29.56035 -27.63487 -26.22007 -25.52669 -25.00596 -24.00818 -22.22185 -20.42400 -19.69170 -19.06075 -18.71276 -18.56677 -18.06740 -17.55956 -17.23877 -17.03670 -16.46924 -16.23566 -16.12500 -15.87425 -15.68227 -14.96676 -14.76560 -14.61223 -14.27587 -14.20365 -14.08044 -13.66230 -13.49913 -13.30656 -13.21618 -13.02728 -12.79279 -12.61784 -12.50178 -12.33907 -12.19672 -12.15264 -11.97549 -11.91626 -11.69663 -10.88799 -10.85231 -10.64618 -10.59326 -9.49526 -9.18423 -8.22971 -6.37240 -0.55672 -0.10990 0.79471 1.24644 1.36895 1.37516 1.40165 1.49607 1.65272 2.17698 2.32367 2.44746 2.53057 3.07153 3.19807 3.42612 3.51635 3.64987 3.74997 3.82939 3.88128 4.00870 4.34450 4.41010 4.57774 4.66012 4.70618 4.78415 4.91364 4.97593 5.06754 5.13211 5.20440 5.26576 5.52717 5.79416 5.89276 6.04596 6.16043 6.50276 6.64528 6.71830 6.88338 7.22348 7.37439 8.84262 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.002408 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.044053 B =11625.000154 C =12297.034017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.081 3.919 3 H 0.117 0.883 4 O -0.337 6.337 5 C 0.524 3.476 6 O -0.526 6.526 7 C -0.245 4.245 8 C 0.228 3.772 9 N -0.549 5.549 10 C 0.447 3.553 11 N -0.810 5.810 12 C -0.172 4.172 13 Cl -0.035 7.035 14 C 0.043 3.957 15 C 0.500 3.500 16 O -0.576 6.576 17 N -0.600 5.600 18 C 0.068 3.932 19 C 0.260 3.740 20 C -0.545 4.545 21 H 0.052 0.948 22 C 0.010 3.990 23 N -0.926 5.926 24 Si 0.965 3.035 25 H -0.281 1.281 26 H -0.273 1.273 27 H -0.263 1.263 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.181 0.819 32 H 0.421 0.579 33 H 0.423 0.577 34 H 0.165 0.835 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.002 0.998 39 H 0.034 0.966 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 5.252 26.831 27.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.023 3.977 3 H 0.135 0.865 4 O -0.252 6.252 5 C 0.370 3.630 6 O -0.417 6.417 7 C -0.252 4.252 8 C 0.067 3.933 9 N -0.268 5.268 10 C 0.205 3.795 11 N -0.352 5.352 12 C -0.206 4.206 13 Cl -0.006 7.006 14 C 0.018 3.982 15 C 0.287 3.713 16 O -0.456 6.456 17 N -0.332 5.332 18 C -0.074 4.074 19 C 0.139 3.861 20 C -0.584 4.584 21 H 0.070 0.930 22 C -0.189 4.189 23 N -0.565 5.565 24 Si 0.789 3.211 25 H -0.207 1.207 26 H -0.198 1.198 27 H -0.187 1.187 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.088 0.912 31 H 0.198 0.802 32 H 0.254 0.746 33 H 0.257 0.743 34 H 0.183 0.817 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.020 0.980 39 H 0.051 0.949 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.954 4.156 26.878 27.645 hybrid contribution 0.961 0.818 -0.372 1.316 sum -3.993 4.974 26.506 27.263 Atomic orbital electron populations 1.22300 0.89131 1.04551 1.05937 1.22567 0.97888 0.96736 0.80526 0.86545 1.86627 1.77194 1.41628 1.19781 1.20936 0.73737 0.84762 0.83569 1.90801 1.50145 1.16168 1.84607 1.19570 1.17123 0.95732 0.92806 1.23170 0.84194 0.91214 0.94704 1.67624 1.21990 1.37963 0.99236 1.18505 0.86134 0.86865 0.88032 1.42405 1.69190 1.13504 1.10136 1.20716 1.16273 0.91684 0.91937 1.98370 1.95079 1.73194 1.33990 1.21144 0.87477 1.01477 0.88142 1.20618 0.80120 0.85451 0.85105 1.90667 1.42167 1.26019 1.86729 1.48045 1.54028 1.25437 1.05676 1.22200 0.96536 0.84545 1.04084 1.18842 0.93743 0.91895 0.81584 1.21694 1.02128 1.23157 1.11405 0.93013 1.25813 1.02272 0.94980 0.95865 1.70036 1.39736 1.29144 1.17627 0.85456 0.79067 0.78959 0.77588 1.20744 1.19805 1.18718 0.89285 0.87359 0.91215 0.80176 0.74612 0.74262 0.81709 0.89656 0.89393 0.90769 0.97980 0.94852 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 9.27 71.98 0.67 -3.08 16 2 C 0.08 2.57 2.17 29.85 0.06 2.63 16 3 H 0.12 3.46 6.15 -2.39 -0.01 3.45 16 4 O -0.34 -10.98 8.68 -50.22 -0.44 -11.41 16 5 C 0.52 15.08 7.87 70.24 0.55 15.63 16 6 O -0.53 -16.07 15.67 19.78 0.31 -15.76 16 7 C -0.25 -5.88 5.89 -20.00 -0.12 -6.00 16 8 C 0.23 5.32 10.79 85.06 0.92 6.23 16 9 N -0.55 -11.78 10.38 -192.19 -2.00 -13.78 16 10 C 0.45 7.71 7.73 133.26 1.03 8.74 16 11 N -0.81 -8.01 9.01 -55.43 -0.50 -8.51 16 12 C -0.17 -2.93 6.32 22.27 0.14 -2.79 16 13 Cl -0.03 -0.45 27.57 -2.72 -0.07 -0.53 16 14 C 0.04 0.86 9.44 22.49 0.21 1.07 16 15 C 0.50 21.38 7.10 87.66 0.62 22.00 16 16 O -0.58 -30.65 16.09 15.71 0.25 -30.40 16 17 N -0.60 -25.20 2.86 -851.12 -2.43 -27.63 16 18 C 0.07 1.95 8.92 127.77 1.14 3.09 16 19 C 0.26 13.88 5.16 85.63 0.44 14.32 16 20 C -0.55 -31.42 9.38 25.60 0.24 -31.18 16 21 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 22 C 0.01 0.58 5.46 84.65 0.46 1.04 16 23 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 24 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 27 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.11 2.06 5.12 -2.38 -0.01 2.04 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.18 4.27 7.61 -2.91 -0.02 4.25 16 32 H 0.42 3.01 8.95 -92.71 -0.83 2.18 16 33 H 0.42 2.61 7.45 -92.70 -0.69 1.92 16 34 H 0.17 2.97 7.73 -2.91 -0.02 2.95 16 35 H 0.09 1.89 7.04 -2.39 -0.02 1.87 16 36 H 0.09 2.02 6.06 -2.39 -0.01 2.01 16 37 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 38 H 0.00 0.13 7.43 -2.39 -0.02 0.11 16 39 H 0.03 1.77 8.07 -2.38 -0.02 1.75 16 40 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -77.57 361.98 3.42 -74.15 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -0.39 Total: 10.49 kcal Atomic # 6 Polarization: 25.33 SS G_CDS: 6.37 Total: 31.70 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -4.64 Total: -105.31 kcal Atomic # 8 Polarization: -57.69 SS G_CDS: 0.13 Total: -57.57 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.07 Total: -0.53 kcal Total: -77.57 3.42 -74.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728632506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.435 kcal (2) G-P(sol) polarization free energy of solvation -77.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds