Wall clock time and date at job start Sat Apr 11 2020 06:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 5 5 C 1.34740 * 116.99951 * 89.99965 * 4 2 1 6 6 O 1.21475 * 119.99502 * 359.97438 * 5 4 2 7 7 C 1.47698 * 119.99929 * 180.02562 * 5 4 2 8 8 C 1.39525 * 119.63279 * 179.72124 * 7 5 4 9 9 C 1.38274 * 119.18083 * 179.78752 * 8 7 5 10 10 C 1.39375 * 118.44923 * 0.48588 * 9 8 7 11 11 N 1.39074 * 120.40281 * 179.72415 * 10 9 8 12 12 C 1.39663 * 119.19667 * 359.73746 * 10 9 8 13 13 Cl 1.73595 * 119.62509 * 180.02562 * 12 10 9 14 14 N 1.31371 * 120.74739 * 0.02632 * 12 10 9 15 15 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 16 16 O 1.21285 * 120.00040 * 114.99997 * 15 2 1 17 17 N 1.34778 * 119.99902 * 295.00139 * 15 2 1 18 18 C 1.46493 * 120.00087 * 359.97438 * 17 15 2 19 19 C 1.46505 * 119.99823 * 179.97438 * 17 15 2 20 20 C 1.50697 * 109.46900 * 89.99912 * 19 17 15 21 21 H 1.07995 * 120.00161 * 0.02562 * 20 19 17 22 22 C 1.37880 * 120.00017 * 179.97438 * 20 19 17 23 23 N 1.31522 * 119.99535 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46712 * 60.00253 * 24 22 20 26 26 H 1.48495 * 109.47092 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47224 * 300.00309 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.08000 * 120.41451 * 0.03073 * 8 7 5 32 32 H 1.07998 * 120.77037 * 180.22355 * 9 8 7 33 33 H 0.96997 * 120.00397 * 180.02562 * 11 10 9 34 34 H 0.97000 * 119.99976 * 0.02562 * 11 10 9 35 35 H 1.09002 * 109.47115 * 89.99747 * 18 17 15 36 36 H 1.08998 * 109.47192 * 209.99907 * 18 17 15 37 37 H 1.08999 * 109.47064 * 329.99847 * 18 17 15 38 38 H 1.08997 * 109.46961 * 210.00478 * 19 17 15 39 39 H 1.09005 * 109.46984 * 329.99937 * 19 17 15 40 40 H 0.97003 * 119.99529 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2179 0.0670 -2.2853 6 8 1.9969 1.2610 -2.2545 7 6 2.7090 -0.5614 -3.5285 8 6 2.9119 0.2229 -4.6644 9 6 3.3762 -0.3743 -5.8219 10 6 3.6149 -1.7474 -5.8109 11 7 4.0767 -2.3907 -6.9541 12 6 3.3845 -2.4696 -4.6378 13 17 3.6788 -4.1802 -4.6115 14 7 2.9475 -1.8690 -3.5542 15 6 2.0324 -0.7104 1.2304 16 8 2.6531 -1.7467 1.1214 17 7 1.7920 -0.1942 2.4520 18 6 1.0427 1.0577 2.5836 19 6 2.2799 -0.8852 3.6481 20 6 3.6615 -0.3879 3.9870 21 1 4.1292 0.3676 3.3730 22 6 4.3282 -0.8966 5.0814 23 7 3.7584 -1.8162 5.8294 24 14 6.0405 -0.2797 5.5019 25 1 5.9905 1.1820 5.7598 26 1 6.5346 -0.9792 6.7150 27 1 6.9572 -0.5507 4.3655 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 2.7127 1.2841 -4.6389 32 1 3.5457 0.2090 -6.7149 33 1 4.2406 -3.3466 -6.9401 34 1 4.2349 -1.8834 -7.7656 35 1 -0.0214 0.8372 2.6678 36 1 1.3755 1.5882 3.4758 37 1 1.2166 1.6793 1.7053 38 1 1.6073 -0.6862 4.4824 39 1 2.3162 -1.9580 3.4586 40 1 4.2276 -2.1744 6.5991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772077647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:44 Heat of formation + Delta-G solvation = -104.371666 kcal Electronic energy + Delta-G solvation = -26811.706188 eV Core-core repulsion = 22652.002004 eV Total energy + Delta-G solvation = -4159.704184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.12096 -41.26861 -40.34280 -37.83256 -37.56123 -36.70287 -36.51994 -34.90403 -33.18898 -33.03760 -30.67532 -29.58354 -27.65794 -26.31040 -25.66225 -24.90482 -23.99339 -22.34705 -20.43486 -19.86825 -18.80155 -18.70591 -18.34178 -18.10643 -17.64846 -17.31839 -17.14288 -16.63472 -16.39653 -15.94853 -15.88827 -15.66007 -14.90026 -14.76408 -14.45386 -14.30411 -14.13784 -13.83632 -13.69240 -13.51176 -13.31568 -13.06674 -12.87080 -12.81385 -12.64440 -12.57959 -12.51858 -12.43444 -12.21018 -12.05359 -11.92107 -11.73927 -10.88953 -10.74222 -10.65501 -10.60887 -9.51901 -8.96008 -8.24295 -6.39012 -0.54654 -0.01728 0.69797 1.17359 1.27862 1.35308 1.40205 1.47356 1.62786 2.27750 2.40776 2.51371 2.55443 3.05418 3.10690 3.40772 3.43614 3.69521 3.81069 3.85412 3.90064 4.09686 4.34463 4.50529 4.61308 4.62212 4.68511 4.81011 4.89500 4.95148 5.09169 5.15859 5.17839 5.23724 5.50883 5.77910 5.98869 6.02978 6.26830 6.57071 6.62960 6.69345 6.71574 7.20862 7.35794 8.83020 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013220 B = 0.002717 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.503996 B =10303.677519 C =11246.412425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.076 3.924 3 H 0.120 0.880 4 O -0.331 6.331 5 C 0.525 3.475 6 O -0.514 6.514 7 C 0.005 3.995 8 C -0.032 4.032 9 C -0.146 4.146 10 C 0.239 3.761 11 N -0.824 5.824 12 C 0.072 3.928 13 Cl -0.032 7.032 14 N -0.422 5.422 15 C 0.498 3.502 16 O -0.579 6.579 17 N -0.599 5.599 18 C 0.068 3.932 19 C 0.260 3.740 20 C -0.548 4.548 21 H 0.052 0.948 22 C 0.009 3.991 23 N -0.927 5.927 24 Si 0.967 3.033 25 H -0.258 1.258 26 H -0.275 1.275 27 H -0.281 1.281 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.178 0.822 32 H 0.205 0.795 33 H 0.412 0.588 34 H 0.427 0.573 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.035 0.965 39 H -0.002 1.002 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.413 6.272 -30.346 31.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.017 3.983 3 H 0.138 0.862 4 O -0.246 6.246 5 C 0.370 3.630 6 O -0.403 6.403 7 C -0.132 4.132 8 C -0.053 4.053 9 C -0.176 4.176 10 C 0.122 3.878 11 N -0.362 5.362 12 C -0.104 4.104 13 Cl -0.004 7.004 14 N -0.135 5.135 15 C 0.285 3.715 16 O -0.459 6.459 17 N -0.332 5.332 18 C -0.073 4.073 19 C 0.139 3.861 20 C -0.586 4.586 21 H 0.070 0.930 22 C -0.190 4.190 23 N -0.566 5.566 24 Si 0.791 3.209 25 H -0.182 1.182 26 H -0.200 1.200 27 H -0.207 1.207 28 H 0.130 0.870 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.195 0.805 32 H 0.222 0.778 33 H 0.244 0.756 34 H 0.261 0.739 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.016 0.984 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.292 5.374 -29.406 30.199 hybrid contribution 1.194 -0.281 0.089 1.230 sum -3.097 5.093 -29.317 29.917 Atomic orbital electron populations 1.22287 0.89067 1.04230 1.06108 1.22636 0.98023 0.96784 0.80811 0.86222 1.86814 1.76452 1.41526 1.19773 1.21077 0.73731 0.84625 0.83541 1.90784 1.49931 1.15185 1.84408 1.19513 1.11686 0.88891 0.93133 1.22153 0.91134 1.02411 0.89613 1.21467 1.04271 0.91037 1.00811 1.18617 0.89728 0.92685 0.86761 1.42552 1.70153 1.12825 1.10685 1.21286 1.09869 0.88513 0.90744 1.98390 1.94288 1.09546 1.98149 1.66536 1.06889 1.11618 1.28427 1.20674 0.80132 0.85424 0.85247 1.90685 1.42226 1.26227 1.86754 1.48051 1.54201 1.25428 1.05501 1.22208 0.96495 0.84442 1.04188 1.18841 0.93955 0.91703 0.81557 1.21665 1.02243 1.23214 1.11493 0.93019 1.25856 1.02434 0.94923 0.95828 1.70042 1.39924 1.28930 1.17700 0.85474 0.78715 0.79242 0.77424 1.18194 1.20034 1.20664 0.87005 0.91860 0.89081 0.80457 0.77842 0.75619 0.73916 0.89670 0.90554 0.89316 0.94682 0.98371 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 9.28 71.98 0.67 -3.57 16 2 C 0.08 2.71 2.17 29.85 0.06 2.78 16 3 H 0.12 3.90 6.15 -2.39 -0.01 3.88 16 4 O -0.33 -13.11 9.23 -50.13 -0.46 -13.57 16 5 C 0.53 17.41 7.91 70.32 0.56 17.96 16 6 O -0.51 -16.27 15.57 19.92 0.31 -15.96 16 7 C 0.00 0.14 6.74 41.79 0.28 0.42 16 8 C -0.03 -0.54 9.62 22.59 0.22 -0.32 16 9 C -0.15 -1.45 10.02 22.55 0.23 -1.22 16 10 C 0.24 3.20 6.79 38.61 0.26 3.46 16 11 N -0.82 -4.23 9.02 -50.99 -0.46 -4.69 16 12 C 0.07 1.67 7.30 85.11 0.62 2.29 16 13 Cl -0.03 -0.70 27.76 -2.72 -0.08 -0.78 16 14 N -0.42 -13.12 10.08 -175.42 -1.77 -14.88 16 15 C 0.50 23.46 7.10 87.66 0.62 24.08 16 16 O -0.58 -34.18 16.09 15.70 0.25 -33.93 16 17 N -0.60 -26.94 2.86 -851.14 -2.43 -29.37 16 18 C 0.07 2.08 8.92 127.77 1.14 3.22 16 19 C 0.26 14.57 5.16 85.63 0.44 15.01 16 20 C -0.55 -32.76 9.39 25.60 0.24 -32.52 16 21 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 22 C 0.01 0.52 5.46 84.65 0.46 0.99 16 23 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 24 Si 0.97 46.26 29.54 68.60 2.03 48.28 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 28 H 0.11 2.39 5.12 -2.39 -0.01 2.38 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.18 2.24 7.63 -2.91 -0.02 2.22 16 32 H 0.20 -0.04 8.06 -2.91 -0.02 -0.06 16 33 H 0.41 2.16 7.51 -92.71 -0.70 1.46 16 34 H 0.43 -0.83 8.85 -92.71 -0.82 -1.65 16 35 H 0.09 2.04 7.02 -2.39 -0.02 2.02 16 36 H 0.08 2.39 8.07 -2.39 -0.02 2.37 16 37 H 0.09 2.18 6.08 -2.39 -0.01 2.17 16 38 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 39 H 0.00 -0.12 7.42 -2.38 -0.02 -0.14 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -89.79 362.97 3.09 -86.69 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -0.39 Total: 2.65 kcal Atomic # 6 Polarization: 26.78 SS G_CDS: 5.80 Total: 32.58 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -4.37 Total: -105.97 kcal Atomic # 8 Polarization: -63.57 SS G_CDS: 0.10 Total: -63.46 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -89.79 3.09 -86.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772077647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.677 kcal (2) G-P(sol) polarization free energy of solvation -89.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds