Wall clock time and date at job start Sat Apr 11 2020 06:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47071 * 2 1 4 4 C 1.46500 * 120.00451 * 269.99792 * 3 2 1 5 5 C 1.50698 * 109.47376 * 270.00102 * 4 3 2 6 6 H 1.08003 * 119.99414 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00067 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00287 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00040 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46819 * 90.00449 * 9 7 5 11 11 H 1.48501 * 109.47146 * 210.00172 * 9 7 5 12 12 H 1.48493 * 109.47167 * 330.00499 * 9 7 5 13 13 C 1.34775 * 119.99772 * 90.00103 * 3 2 1 14 14 O 1.21280 * 120.00443 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00276 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47653 * 180.02562 * 15 13 3 17 17 C 1.34736 * 117.00183 * 179.97438 * 16 15 13 18 18 O 1.21474 * 119.99903 * 0.02562 * 17 16 15 19 19 C 1.47704 * 119.99609 * 179.97438 * 17 16 15 20 20 C 1.39539 * 119.63140 * 180.22829 * 19 17 16 21 21 C 1.38261 * 119.18046 * 180.27640 * 20 19 17 22 22 C 1.39381 * 118.45023 * 359.50432 * 21 20 19 23 23 N 1.39080 * 120.39960 * 180.27384 * 22 21 20 24 24 C 1.39650 * 119.19668 * 0.25820 * 22 21 20 25 25 Cl 1.73595 * 119.62602 * 179.97438 * 24 22 21 26 26 N 1.31372 * 120.75213 * 359.97438 * 24 22 21 27 27 H 1.08997 * 109.47035 * 59.99995 * 1 2 3 28 28 H 1.09005 * 109.46852 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47441 * 299.99620 * 1 2 3 30 30 H 1.08998 * 109.47159 * 240.00061 * 2 1 3 31 31 H 1.08997 * 109.46867 * 120.00533 * 2 1 3 32 32 H 1.08998 * 109.46629 * 30.00048 * 4 3 2 33 33 H 1.08994 * 109.46915 * 149.99806 * 4 3 2 34 34 H 0.97002 * 120.00485 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47286 * 59.99737 * 15 13 3 36 36 H 1.09000 * 109.47086 * 300.00357 * 15 13 3 37 37 H 1.07996 * 120.40645 * 0.03807 * 20 19 17 38 38 H 1.08002 * 120.77680 * 179.78711 * 21 20 19 39 39 H 0.96998 * 120.00374 * 0.02562 * 23 22 21 40 40 H 0.97002 * 119.99827 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1491 2.3898 -2.8778 8 7 3.3492 3.1259 -3.6179 9 14 5.9136 2.0969 -3.4167 10 1 5.9776 0.8756 -4.2591 11 1 6.3922 3.2642 -4.2000 12 1 6.7736 1.9180 -2.2194 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1597 1.1674 15 6 1.9913 1.3063 2.4723 16 8 2.3053 2.1959 3.5760 17 6 2.1326 1.7107 4.8210 18 8 1.7311 0.5753 4.9801 19 6 2.4325 2.5590 5.9924 20 6 2.2555 2.0471 7.2784 21 6 2.5336 2.8512 8.3682 22 6 2.9929 4.1468 8.1374 23 7 3.2905 4.9884 9.2040 24 6 3.1510 4.5894 6.8224 25 17 3.7217 6.2012 6.5222 26 7 2.8727 3.8000 5.8099 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5818 1.6878 -2.0283 33 1 2.0955 3.1410 -1.1383 34 1 3.6752 3.5165 -4.4438 35 1 2.6211 0.4185 2.5302 36 1 0.9432 1.0125 2.5298 37 1 1.9019 1.0366 7.4206 38 1 2.4025 2.4825 9.3748 39 1 3.1791 4.6747 10.1151 40 1 3.6094 5.8891 9.0367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772078676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:47 Heat of formation + Delta-G solvation = -81.502161 kcal Electronic energy + Delta-G solvation = -26473.814905 eV Core-core repulsion = 22315.102417 eV Total energy + Delta-G solvation = -4158.712487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07967 -40.00589 -38.80618 -36.94513 -36.33499 -35.86465 -35.21794 -32.79096 -32.46708 -30.31993 -30.07897 -28.87748 -26.53463 -24.79116 -24.04042 -23.02251 -22.55519 -21.40314 -18.88933 -18.60980 -17.94689 -17.63993 -16.97118 -16.65322 -16.33772 -16.16862 -15.84924 -15.25408 -15.18383 -15.07641 -14.36603 -14.25289 -13.91772 -13.48193 -13.34720 -13.19272 -12.83433 -12.45146 -12.17228 -12.10343 -12.00221 -11.81555 -11.60578 -11.56032 -11.18100 -10.94871 -10.88398 -10.81778 -10.54908 -10.45474 -10.09588 -10.04835 -10.03602 -9.60471 -8.89870 -8.39941 -8.34691 -7.67898 -6.00820 -4.05362 0.25408 0.68195 1.48618 2.21515 2.40811 3.00443 3.32815 3.34251 3.39442 3.40771 3.46468 3.79829 3.99939 4.20215 4.47794 4.51448 4.58382 4.84418 4.94886 5.16719 5.20760 5.28193 5.33861 5.41789 5.48777 5.64238 5.75538 5.78623 6.04281 6.24195 6.32121 6.48981 6.49869 6.90827 7.05174 7.19661 7.46467 7.54125 7.74255 7.95649 8.26099 8.37142 8.91777 9.07076 9.59528 11.07366 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.002629 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.921135 B =10649.120755 C =12108.756658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.594 5.594 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.513 6.513 15 C 0.047 3.953 16 O -0.304 6.304 17 C 0.529 3.471 18 O -0.508 6.508 19 C 0.045 3.955 20 C -0.045 4.045 21 C -0.163 4.163 22 C 0.220 3.780 23 N -0.849 5.849 24 C 0.098 3.902 25 Cl -0.023 7.023 26 N -0.374 5.374 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.159 0.841 38 H 0.154 0.846 39 H 0.408 0.592 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 -1.976 27.943 28.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.328 5.328 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.290 3.710 14 O -0.387 6.387 15 C -0.030 4.030 16 O -0.217 6.217 17 C 0.373 3.627 18 O -0.397 6.397 19 C -0.093 4.093 20 C -0.066 4.066 21 C -0.193 4.193 22 C 0.107 3.893 23 N -0.387 5.387 24 C -0.077 4.077 25 Cl 0.005 6.995 26 N -0.086 5.086 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.177 0.823 38 H 0.172 0.828 39 H 0.238 0.762 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -4.077 -1.162 26.832 27.165 hybrid contribution 0.956 -0.228 0.575 1.139 sum -3.121 -1.390 27.408 27.620 Atomic orbital electron populations 1.22236 0.96602 1.01621 1.02425 1.21496 0.93710 0.84028 1.02975 1.48197 1.64098 1.13379 1.07097 1.19318 0.96408 0.93745 0.77580 1.21435 0.96902 1.31947 1.06257 0.92395 1.24926 0.97871 0.94886 0.96394 1.69930 1.35715 1.33408 1.14330 0.86491 0.84705 0.77621 0.78587 1.20676 1.21093 1.19846 1.19680 0.79842 0.87202 0.84227 1.90742 1.44000 1.17388 1.86618 1.23041 1.02729 0.92704 0.84561 1.86759 1.77587 1.43848 1.13483 1.20539 0.74244 0.84690 0.83264 1.90842 1.43434 1.18585 1.86811 1.19537 1.08056 0.90581 0.91135 1.21914 0.93225 1.01155 0.90284 1.20962 1.06145 0.91685 1.00508 1.18562 0.91878 0.91154 0.87708 1.42511 1.73190 1.16671 1.06312 1.21041 1.08158 0.91019 0.87514 1.98408 1.87034 1.17744 1.96296 1.66801 1.04797 1.03213 1.33839 0.91822 0.91951 0.93106 0.89481 0.91758 0.94670 0.93692 0.92717 0.88556 0.88643 0.82317 0.82815 0.76218 0.76075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.10 1.65 5.93 -4.04 -0.02 1.63 16 3 N -0.59 -12.85 2.46 -175.07 -0.43 -13.28 16 4 C 0.25 6.57 5.16 -5.19 -0.03 6.54 16 5 C -0.53 -15.15 9.38 -34.44 -0.32 -15.47 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.51 11.25 7.75 -10.99 -0.09 11.16 16 14 O -0.51 -13.93 16.08 -14.10 -0.23 -14.16 16 15 C 0.05 0.82 4.51 36.01 0.16 0.98 16 16 O -0.30 -5.68 9.56 -47.27 -0.45 -6.13 16 17 C 0.53 8.34 7.94 34.60 0.27 8.61 16 18 O -0.51 -7.93 16.10 -19.24 -0.31 -8.23 16 19 C 0.05 0.61 6.74 -83.04 -0.56 0.05 16 20 C -0.04 -0.41 9.62 -39.09 -0.38 -0.78 16 21 C -0.16 -1.06 10.02 -39.15 -0.39 -1.46 16 22 C 0.22 1.70 6.79 -83.62 -0.57 1.14 16 23 N -0.85 -3.47 9.02 32.53 0.29 -3.17 16 24 C 0.10 1.14 7.30 -17.22 -0.13 1.01 16 25 Cl -0.02 -0.25 27.76 -51.86 -1.44 -1.69 16 26 N -0.37 -5.56 10.08 -6.80 -0.07 -5.62 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.67 7.22 -51.93 -0.37 0.29 16 30 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 31 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.10 1.48 7.40 -51.93 -0.38 1.09 16 36 H 0.10 1.41 7.18 -51.93 -0.37 1.04 16 37 H 0.16 1.16 7.63 -52.49 -0.40 0.76 16 38 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 39 H 0.41 0.46 8.85 -40.82 -0.36 0.10 16 40 H 0.41 1.55 7.51 -40.82 -0.31 1.24 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -37.43 368.28 -7.70 -45.13 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -4.57 Total: -2.57 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: -1.76 Total: 13.15 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.53 Total: -48.26 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.99 Total: -28.53 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.44 Total: -1.69 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.43 -7.70 -45.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772078676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.370 kcal (2) G-P(sol) polarization free energy of solvation -37.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds