Wall clock time and date at job start Sat Apr 11 2020 06:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47060 * 2 1 4 4 O 1.42903 * 109.46821 * 120.00254 * 2 1 3 5 5 C 1.35898 * 116.99880 * 275.06570 * 4 2 1 6 6 C 1.38762 * 120.04597 * 185.49147 * 5 4 2 7 7 C 1.38126 * 119.97143 * 179.97438 * 6 5 4 8 8 C 1.38270 * 120.06613 * 0.02562 * 7 6 5 9 9 C 1.38367 * 120.09896 * 359.97438 * 8 7 6 10 10 Cl 1.73600 * 119.98507 * 180.28340 * 9 8 7 11 11 C 1.38284 * 120.02737 * 0.02562 * 9 8 7 12 12 C 1.50699 * 109.46972 * 240.00014 * 2 1 3 13 13 O 1.21278 * 120.00111 * 245.00393 * 12 2 1 14 14 N 1.34784 * 119.99827 * 65.00243 * 12 2 1 15 15 N 1.40096 * 119.99775 * 179.97438 * 14 12 2 16 16 C 1.34776 * 119.99998 * 179.97438 * 15 14 12 17 17 O 1.21583 * 120.00492 * 180.02562 * 16 15 14 18 18 N 1.34784 * 119.99501 * 359.97438 * 16 15 14 19 19 C 1.46507 * 119.99519 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.46711 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00564 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99862 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99827 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00317 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47322 * 89.99552 * 24 22 20 26 26 H 1.48498 * 109.47117 * 210.00175 * 24 22 20 27 27 H 1.48507 * 109.46798 * 329.99877 * 24 22 20 28 28 H 1.09001 * 109.47421 * 59.99381 * 1 2 3 29 29 H 1.09002 * 109.47511 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47281 * 299.99725 * 1 2 3 31 31 H 1.08006 * 120.01611 * 0.02562 * 6 5 4 32 32 H 1.07996 * 119.97028 * 180.02562 * 7 6 5 33 33 H 1.08006 * 119.94812 * 180.02562 * 8 7 6 34 34 H 1.07997 * 120.02889 * 179.97438 * 11 9 8 35 35 H 0.97000 * 119.99749 * 359.97438 * 14 12 2 36 36 H 0.96997 * 120.00317 * 0.02562 * 15 14 12 37 37 H 0.96994 * 120.00549 * 0.02562 * 18 16 15 38 38 H 1.09002 * 109.46925 * 300.00076 * 19 18 16 39 39 H 1.09003 * 109.47049 * 60.00151 * 19 18 16 40 40 H 0.97003 * 120.00053 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1111 0.0621 2.3045 6 6 2.6729 -0.4963 3.4438 7 6 2.7791 0.2532 4.5992 8 6 2.3257 1.5593 4.6218 9 6 1.7651 2.1189 3.4873 10 17 1.2035 3.7613 3.5169 11 6 1.6567 1.3722 2.3285 12 6 2.0323 -0.7104 -1.2305 13 8 2.6528 -1.7467 -1.1215 14 7 1.7918 -0.1941 -2.4520 15 7 2.2592 -0.8542 -3.5959 16 6 2.0184 -0.3382 -4.8175 17 8 2.4236 -0.9113 -5.8102 18 7 1.3274 0.8126 -4.9385 19 6 1.0660 1.3738 -6.2664 20 6 0.2822 2.6532 -6.1255 21 1 0.0066 3.0126 -5.1451 22 6 -0.0823 3.3655 -7.2484 23 7 0.2546 2.9286 -8.4423 24 14 -1.0533 4.9517 -7.0739 25 1 -0.1146 6.0964 -6.9563 26 1 -1.9149 5.1387 -8.2689 27 1 -1.9025 4.8810 -5.8576 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 3.0277 -1.5163 3.4270 32 1 3.2167 -0.1813 5.4858 33 1 2.4101 2.1437 5.5261 34 1 1.2188 1.8089 1.4432 35 1 1.2952 0.6346 -2.5391 36 1 2.7556 -1.6830 -3.5088 37 1 1.0037 1.2697 -4.1466 38 1 2.0124 1.5810 -6.7659 39 1 0.4925 0.6590 -6.8565 40 1 -0.0022 3.4295 -9.2323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787354500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:49 Heat of formation + Delta-G solvation = -66.814064 kcal Electronic energy + Delta-G solvation = -26168.416161 eV Core-core repulsion = 22010.340597 eV Total energy + Delta-G solvation = -4158.075564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.02267 -41.27392 -40.26547 -38.66361 -37.30963 -36.89234 -36.24557 -34.31287 -33.85089 -31.91293 -31.42109 -30.59795 -29.14572 -25.97598 -24.95798 -24.05885 -23.48256 -22.15277 -22.01184 -20.60568 -19.67952 -18.79846 -18.44735 -17.65902 -17.19338 -17.10174 -16.86223 -16.62741 -16.57608 -16.17841 -15.85394 -15.76805 -15.43779 -14.99212 -14.82511 -14.31635 -14.27329 -14.13532 -14.03938 -13.49343 -13.19501 -12.91328 -12.82911 -12.77282 -12.70186 -12.55150 -12.23410 -12.15256 -11.93915 -11.88465 -11.71919 -11.45712 -11.18023 -10.80854 -10.12082 -9.91904 -9.44702 -9.31881 -8.26082 -6.42355 0.10428 0.25742 0.49750 1.09637 1.14442 1.47905 1.49655 1.60381 1.85434 2.00103 2.22999 2.44797 2.60361 3.01320 3.10125 3.56949 3.73278 3.82212 3.91928 3.93790 4.10164 4.28227 4.48954 4.59415 4.64772 4.68277 4.97163 5.07991 5.11178 5.19408 5.22697 5.27000 5.35799 5.39024 5.43629 5.58937 5.77821 5.89361 6.08520 6.22867 6.60346 6.70958 7.18615 7.26771 7.43015 8.85947 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.002505 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.381671 B =11174.099720 C =13482.315293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.081 3.919 3 H 0.134 0.866 4 O -0.301 6.301 5 C 0.128 3.872 6 C -0.155 4.155 7 C -0.061 4.061 8 C -0.150 4.150 9 C -0.007 4.007 10 Cl -0.067 7.067 11 C -0.209 4.209 12 C 0.521 3.479 13 O -0.555 6.555 14 N -0.505 5.505 15 N -0.529 5.529 16 C 0.706 3.294 17 O -0.623 6.623 18 N -0.712 5.712 19 C 0.280 3.720 20 C -0.552 4.552 21 H 0.091 0.909 22 C 0.005 3.995 23 N -0.930 5.930 24 Si 0.983 3.017 25 H -0.273 1.273 26 H -0.289 1.289 27 H -0.251 1.251 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.142 0.858 32 H 0.169 0.831 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.437 0.563 36 H 0.439 0.561 37 H 0.402 0.598 38 H -0.008 1.008 39 H -0.007 1.007 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.018 0.341 31.344 31.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.020 3.980 3 H 0.151 0.849 4 O -0.214 6.214 5 C 0.082 3.918 6 C -0.174 4.174 7 C -0.079 4.079 8 C -0.169 4.169 9 C -0.033 4.033 10 Cl -0.038 7.038 11 C -0.228 4.228 12 C 0.307 3.693 13 O -0.430 6.430 14 N -0.260 5.260 15 N -0.286 5.286 16 C 0.405 3.595 17 O -0.501 6.501 18 N -0.368 5.368 19 C 0.157 3.843 20 C -0.590 4.590 21 H 0.109 0.891 22 C -0.195 4.195 23 N -0.569 5.569 24 Si 0.807 3.193 25 H -0.199 1.199 26 H -0.215 1.215 27 H -0.174 1.174 28 H 0.125 0.875 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.160 0.840 32 H 0.186 0.814 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.281 0.719 36 H 0.285 0.715 37 H 0.239 0.761 38 H 0.010 0.990 39 H 0.011 0.989 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.635 -0.672 30.392 30.406 hybrid contribution -0.469 0.923 -0.501 1.150 sum 0.166 0.251 29.891 29.892 Atomic orbital electron populations 1.22474 0.89817 1.04996 1.06349 1.22173 0.97366 0.97211 0.81239 0.84862 1.86194 1.81484 1.37540 1.16165 1.19052 0.95985 0.90017 0.86710 1.20864 1.02841 1.02415 0.91291 1.21273 0.96186 0.92540 0.97864 1.21318 1.00941 0.96552 0.98071 1.20828 1.00342 0.86564 0.95611 1.98397 1.87885 1.18742 1.98739 1.21289 1.07703 0.93918 0.99932 1.20782 0.79761 0.85560 0.83163 1.90767 1.41356 1.24730 1.86185 1.44652 1.57416 1.26329 0.97570 1.44414 1.61253 1.27479 0.95444 1.15934 0.79853 0.81990 0.81727 1.90966 1.59990 1.63859 1.35262 1.45295 1.57120 1.22959 1.11414 1.18579 0.94520 0.92729 0.78439 1.21573 1.35963 1.06827 0.94629 0.89126 1.26027 0.96929 1.02097 0.94449 1.70139 1.46807 1.41010 0.98920 0.85178 0.78134 0.77775 0.78258 1.19856 1.21516 1.17413 0.87544 0.91166 0.88646 0.83978 0.81358 0.82989 0.82747 0.71855 0.71537 0.76093 0.99002 0.98903 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.12 71.98 0.66 -1.24 16 2 C 0.08 1.23 2.64 29.85 0.08 1.30 16 3 H 0.13 1.28 6.32 -2.39 -0.02 1.27 16 4 O -0.30 -5.94 9.34 -73.42 -0.69 -6.63 16 5 C 0.13 2.09 6.60 22.50 0.15 2.24 16 6 C -0.16 -2.16 9.99 22.37 0.22 -1.94 16 7 C -0.06 -0.59 10.04 22.25 0.22 -0.36 16 8 C -0.15 -1.62 9.83 22.31 0.22 -1.40 16 9 C -0.01 -0.09 6.32 22.31 0.14 0.05 16 10 Cl -0.07 -0.91 28.95 -2.72 -0.08 -0.98 16 11 C -0.21 -2.88 8.02 22.39 0.18 -2.70 16 12 C 0.52 11.69 7.30 87.66 0.64 12.32 16 13 O -0.56 -17.38 16.35 15.96 0.26 -17.12 16 14 N -0.51 -10.92 6.22 -173.53 -1.08 -12.00 16 15 N -0.53 -15.98 6.26 -184.75 -1.16 -17.14 16 16 C 0.71 27.83 8.68 179.05 1.55 29.39 16 17 O -0.62 -30.92 17.18 -3.98 -0.07 -30.99 16 18 N -0.71 -27.52 5.51 -482.27 -2.66 -30.18 16 19 C 0.28 14.38 5.43 85.63 0.46 14.85 16 20 C -0.55 -27.63 9.28 25.60 0.24 -27.39 16 21 H 0.09 3.93 7.60 -2.91 -0.02 3.90 16 22 C 0.00 0.25 5.46 84.65 0.46 0.72 16 23 N -0.93 -53.86 13.29 21.45 0.28 -53.57 16 24 Si 0.98 39.74 29.54 68.60 2.03 41.76 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.25 -9.18 7.11 99.48 0.71 -8.48 16 28 H 0.11 0.70 7.92 -2.39 -0.02 0.68 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.09 0.79 6.91 -2.38 -0.02 0.77 16 31 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 33 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.16 1.58 5.43 -2.91 -0.02 1.56 16 35 H 0.44 6.78 6.48 -213.32 -1.38 5.40 16 36 H 0.44 13.47 8.10 -213.33 -1.73 11.74 16 37 H 0.40 11.80 6.24 -92.71 -0.58 11.23 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -76.44 364.54 -0.48 -76.93 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -2.56 Total: 24.08 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: 5.23 Total: 25.83 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -4.61 Total: -112.89 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -0.49 Total: -54.73 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.76 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.98 kcal Total: -76.44 -0.48 -76.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.111 kcal (2) G-P(sol) polarization free energy of solvation -76.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds