Wall clock time and date at job start Sat Apr 11 2020 06:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 O 1.42102 * 110.54044 * 2 1 4 4 O 1.42101 * 110.54545 * 223.25212 * 2 1 3 5 5 C 1.76199 * 104.45217 * 111.62416 * 2 1 3 6 6 C 1.37850 * 119.94491 * 115.23189 * 5 2 1 7 7 C 1.39628 * 119.88579 * 180.23243 * 6 5 2 8 8 C 1.47723 * 120.12401 * 179.79187 * 7 6 5 9 9 O 1.21574 * 119.99620 * 4.88076 * 8 7 6 10 10 N 1.34777 * 120.00223 * 184.87708 * 8 7 6 11 11 C 1.46498 * 119.99931 * 185.07653 * 10 8 7 12 12 C 1.52997 * 109.47022 * 184.99525 * 11 10 8 13 13 C 1.50704 * 115.54973 * 54.24143 * 12 11 10 14 14 H 1.07999 * 120.00023 * 215.59063 * 13 12 11 15 15 C 1.37878 * 120.00225 * 35.31397 * 13 12 11 16 16 N 1.31520 * 119.99529 * 355.78705 * 15 13 12 17 17 Si 1.86800 * 120.00200 * 175.78317 * 15 13 12 18 18 H 1.48503 * 109.46929 * 90.00157 * 17 15 13 19 19 H 1.48500 * 109.46851 * 210.00151 * 17 15 13 20 20 H 1.48503 * 109.47019 * 330.00230 * 17 15 13 21 21 C 1.52996 * 117.49980 * 199.90684 * 12 11 10 22 22 C 1.52998 * 117.50221 * 268.56845 * 12 11 10 23 23 C 1.39678 * 119.75990 * 359.52043 * 7 6 5 24 24 C 1.37820 * 119.87857 * 0.24900 * 23 7 6 25 25 C 1.38641 * 119.94075 * 295.00639 * 5 2 1 26 26 F 1.35099 * 119.87922 * 359.97438 * 25 5 2 27 27 H 1.08999 * 109.47452 * 308.37862 * 1 2 3 28 28 H 1.09001 * 109.47443 * 68.37769 * 1 2 3 29 29 H 1.09001 * 109.46820 * 188.37527 * 1 2 3 30 30 H 1.08003 * 120.06059 * 0.02562 * 6 5 2 31 31 H 0.96997 * 119.99538 * 5.07777 * 10 8 7 32 32 H 1.08993 * 109.47078 * 64.99763 * 11 10 8 33 33 H 1.08998 * 109.47036 * 304.99749 * 11 10 8 34 34 H 0.97001 * 119.99660 * 184.99712 * 16 15 13 35 35 H 1.09002 * 117.50416 * 215.00583 * 21 12 11 36 36 H 1.09000 * 117.49936 * 0.02562 * 21 12 11 37 37 H 1.09007 * 117.49339 * 359.97438 * 22 12 11 38 38 H 1.09002 * 117.49894 * 144.97334 * 22 12 11 39 39 H 1.07997 * 120.06090 * 180.27370 * 23 7 6 40 40 H 1.07994 * 119.93791 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.9185 -1.8320 1.6893 7 6 3.2620 -2.3314 2.9471 8 6 3.9704 -3.6225 3.0639 9 8 4.3339 -4.2090 2.0630 10 7 4.2138 -4.1500 4.2800 11 6 5.0123 -5.3722 4.4018 12 6 5.0332 -5.8241 5.8634 13 6 3.6827 -6.0040 6.5075 14 1 3.5435 -5.7541 7.5489 15 6 2.6233 -6.4823 5.7658 16 7 2.7692 -6.7030 4.4775 17 14 0.9811 -6.8169 6.5908 18 1 0.1425 -5.5924 6.5388 19 1 0.2875 -7.9224 5.8823 20 1 1.2079 -7.2018 8.0070 21 6 6.1529 -6.7740 6.2932 22 6 6.1737 -5.3117 6.7451 23 6 2.9386 -1.6032 4.0942 24 6 2.2780 -0.3991 3.9795 25 6 1.9346 0.0897 2.7281 26 9 1.2875 1.2708 2.6213 27 1 -0.3634 0.6380 0.8056 28 1 -0.3634 0.3787 -0.9553 29 1 -0.3633 -1.0167 0.1497 30 1 3.1702 -2.3890 0.7989 31 1 3.8602 -3.7204 5.0746 32 1 6.0309 -5.1754 4.0678 33 1 4.5728 -6.1563 3.7853 34 1 2.0059 -6.9699 3.9417 35 1 5.9129 -7.5291 7.0418 36 1 6.8750 -7.0767 5.5348 37 1 6.9095 -4.6529 6.2837 38 1 5.9472 -5.1043 7.7910 39 1 3.2059 -1.9828 5.0693 40 1 2.0278 0.1650 4.8658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791052797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:54 Heat of formation + Delta-G solvation = -87.497539 kcal Electronic energy + Delta-G solvation = -27474.920816 eV Core-core repulsion = 23298.072094 eV Total energy + Delta-G solvation = -4176.848722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.53261 -39.87475 -38.02156 -37.26070 -36.67355 -36.15345 -33.37272 -32.30798 -31.63220 -30.93707 -29.80393 -26.30713 -25.50466 -23.90984 -23.24491 -21.35443 -20.48397 -19.43864 -19.04387 -18.41357 -17.47334 -17.11039 -16.64757 -16.52057 -15.97873 -15.86031 -15.57039 -14.96032 -14.90235 -14.38123 -14.32301 -13.99045 -13.75046 -13.63213 -13.40028 -13.25926 -13.07285 -12.75598 -12.53115 -12.26853 -12.17774 -11.96955 -11.82400 -11.53497 -11.30487 -11.16509 -10.93702 -10.82022 -10.59821 -10.34007 -9.85872 -9.78321 -9.32143 -9.06332 -9.04487 -8.94367 -8.39477 -7.98657 -6.08621 -4.29586 -0.23203 0.33640 0.77135 2.52390 2.74491 3.12171 3.23815 3.25425 3.50604 3.64181 3.79953 3.89507 4.01458 4.20735 4.33756 4.46208 4.67905 4.77381 4.81817 4.98186 5.03404 5.32559 5.34714 5.39542 5.54188 5.65748 5.84640 5.92947 6.02079 6.21291 6.41046 6.44953 6.52462 6.61396 6.81335 6.99215 7.17369 7.43750 7.52227 7.87917 8.20425 8.37960 8.71916 8.97318 9.34448 10.80221 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015501 B = 0.003242 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.948917 B = 8635.043739 C = 9018.252043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.503 3.497 3 O -0.929 6.929 4 O -0.927 6.927 5 C -0.706 4.706 6 C 0.056 3.944 7 C -0.142 4.142 8 C 0.545 3.455 9 O -0.546 6.546 10 N -0.672 5.672 11 C 0.163 3.837 12 C 0.035 3.965 13 C -0.500 4.500 14 H 0.061 0.939 15 C 0.074 3.926 16 N -0.865 5.865 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.197 4.197 22 C -0.213 4.213 23 C -0.009 4.009 24 C -0.174 4.174 25 C 0.195 3.805 26 F -0.124 7.124 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.168 0.832 31 H 0.396 0.604 32 H 0.022 0.978 33 H 0.121 0.879 34 H 0.264 0.736 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 13.707 -3.706 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.680 3.320 3 O -0.926 6.926 4 O -0.925 6.925 5 C -0.791 4.791 6 C 0.036 3.964 7 C -0.146 4.146 8 C 0.330 3.670 9 O -0.426 6.426 10 N -0.318 5.318 11 C 0.040 3.960 12 C 0.034 3.966 13 C -0.537 4.537 14 H 0.079 0.921 15 C -0.130 4.130 16 N -0.501 5.501 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.236 4.236 22 C -0.250 4.250 23 C -0.027 4.027 24 C -0.193 4.193 25 C 0.175 3.825 26 F -0.102 7.102 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.155 0.845 30 H 0.186 0.814 31 H 0.231 0.769 32 H 0.040 0.960 33 H 0.138 0.862 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.168 0.832 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.792 13.413 -5.170 15.152 hybrid contribution -1.678 -0.086 1.803 2.465 sum -6.470 13.327 -3.367 15.192 Atomic orbital electron populations 1.30220 1.25246 1.12465 1.12094 1.05244 0.78110 0.74744 0.73907 1.93615 1.77243 1.36104 1.85651 1.93615 1.77398 1.61461 1.59980 1.30553 1.19716 1.08500 1.20379 1.21032 0.86343 0.89821 0.99188 1.20531 1.02958 0.97514 0.93637 1.17805 0.80398 0.84180 0.84621 1.90750 1.53541 1.61889 1.36422 1.45548 1.52176 1.27372 1.06692 1.21161 0.90493 0.86868 0.97461 1.19236 0.89423 0.96989 0.90961 1.20500 0.92423 1.44116 0.96652 0.92076 1.25011 0.98870 0.94286 0.94871 1.69850 1.30404 1.44860 1.04973 0.86573 0.83476 0.78183 0.79710 1.20697 1.21037 1.19793 1.22940 1.04935 0.92236 1.03478 1.22971 1.04836 0.97005 1.00186 1.21666 0.90133 0.91647 0.99291 1.21160 1.03381 0.98400 0.96363 1.17227 0.91081 0.80406 0.93816 1.91577 1.78039 1.43730 1.96884 0.84895 0.84658 0.84549 0.81435 0.76892 0.96031 0.86156 0.92538 0.90167 0.91384 0.91304 0.90586 0.83223 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.11 10.79 101.05 1.09 -3.02 16 2 S 2.50 27.07 5.44 -107.50 -0.58 26.49 16 3 O -0.93 -12.61 17.34 -57.54 -1.00 -13.60 16 4 O -0.93 -12.85 16.73 -57.54 -0.96 -13.81 16 5 C -0.71 -8.82 5.58 -39.57 -0.22 -9.04 16 6 C 0.06 0.83 9.04 -39.20 -0.35 0.48 16 7 C -0.14 -2.25 5.87 -104.97 -0.62 -2.87 16 8 C 0.55 10.84 7.76 -12.38 -0.10 10.75 16 9 O -0.55 -12.75 16.33 5.30 0.09 -12.66 16 10 N -0.67 -13.37 4.96 -61.29 -0.30 -13.67 16 11 C 0.16 3.64 4.62 -4.04 -0.02 3.62 16 12 C 0.03 0.77 2.04 -155.66 -0.32 0.45 16 13 C -0.50 -11.96 8.44 -34.44 -0.29 -12.25 16 14 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 15 C 0.07 1.81 5.31 -17.82 -0.09 1.71 16 16 N -0.87 -22.08 10.11 55.43 0.56 -21.52 16 17 Si 0.89 19.23 29.54 -169.99 -5.02 14.21 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 C -0.20 -4.10 9.96 -26.70 -0.27 -4.37 16 22 C -0.21 -4.14 9.92 -26.70 -0.26 -4.41 16 23 C -0.01 -0.11 9.51 -39.20 -0.37 -0.48 16 24 C -0.17 -1.89 10.01 -39.57 -0.40 -2.28 16 25 C 0.20 2.28 7.19 -39.27 -0.28 2.00 16 26 F -0.12 -1.34 15.71 2.25 0.04 -1.30 16 27 H 0.13 0.70 7.58 -51.92 -0.39 0.31 16 28 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.14 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.17 2.61 6.80 -52.48 -0.36 2.25 16 31 H 0.40 7.17 6.21 -40.82 -0.25 6.91 16 32 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.12 3.12 5.89 -51.93 -0.31 2.81 16 34 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 35 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.15 1.64 6.47 -52.49 -0.34 1.30 16 40 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -32.05 357.62 -8.87 -40.92 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -4.57 Total: 9.28 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -2.50 Total: -19.72 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.26 Total: -35.19 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -1.87 Total: -40.08 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Atomic # 16 Polarization: 27.07 SS G_CDS: -0.58 Total: 26.49 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.05 -8.87 -40.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791052797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.575 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds