Wall clock time and date at job start Sat Apr 11 2020 06:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 O 1.42102 * 110.54044 * 2 1 4 4 O 1.42101 * 110.54545 * 223.25212 * 2 1 3 5 5 C 1.76199 * 104.45217 * 111.62416 * 2 1 3 6 6 C 1.37850 * 119.94491 * 115.23189 * 5 2 1 7 7 C 1.39628 * 119.88579 * 180.23243 * 6 5 2 8 8 C 1.47723 * 120.12401 * 179.79187 * 7 6 5 9 9 O 1.21574 * 119.99620 * 4.88076 * 8 7 6 10 10 N 1.34777 * 120.00223 * 184.87708 * 8 7 6 11 11 C 1.46498 * 119.99931 * 185.07653 * 10 8 7 12 12 C 1.52997 * 109.47022 * 184.99525 * 11 10 8 13 13 C 1.50704 * 115.54973 * 54.24143 * 12 11 10 14 14 H 1.07999 * 120.00023 * 215.59063 * 13 12 11 15 15 C 1.37878 * 120.00225 * 35.31397 * 13 12 11 16 16 N 1.31520 * 119.99529 * 355.78705 * 15 13 12 17 17 Si 1.86800 * 120.00200 * 175.78317 * 15 13 12 18 18 H 1.48503 * 109.46929 * 90.00157 * 17 15 13 19 19 H 1.48500 * 109.46851 * 210.00151 * 17 15 13 20 20 H 1.48503 * 109.47019 * 330.00230 * 17 15 13 21 21 C 1.52996 * 117.49980 * 199.90684 * 12 11 10 22 22 C 1.52998 * 117.50221 * 268.56845 * 12 11 10 23 23 C 1.39678 * 119.75990 * 359.52043 * 7 6 5 24 24 C 1.37820 * 119.87857 * 0.24900 * 23 7 6 25 25 C 1.38641 * 119.94075 * 295.00639 * 5 2 1 26 26 F 1.35099 * 119.87922 * 359.97438 * 25 5 2 27 27 H 1.08999 * 109.47452 * 308.37862 * 1 2 3 28 28 H 1.09001 * 109.47443 * 68.37769 * 1 2 3 29 29 H 1.09001 * 109.46820 * 188.37527 * 1 2 3 30 30 H 1.08003 * 120.06059 * 0.02562 * 6 5 2 31 31 H 0.96997 * 119.99538 * 5.07777 * 10 8 7 32 32 H 1.08993 * 109.47078 * 64.99763 * 11 10 8 33 33 H 1.08998 * 109.47036 * 304.99749 * 11 10 8 34 34 H 0.97001 * 119.99660 * 184.99712 * 16 15 13 35 35 H 1.09002 * 117.50416 * 215.00583 * 21 12 11 36 36 H 1.09000 * 117.49936 * 0.02562 * 21 12 11 37 37 H 1.09007 * 117.49339 * 359.97438 * 22 12 11 38 38 H 1.09002 * 117.49894 * 144.97334 * 22 12 11 39 39 H 1.07997 * 120.06090 * 180.27370 * 23 7 6 40 40 H 1.07994 * 119.93791 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.9185 -1.8320 1.6893 7 6 3.2620 -2.3314 2.9471 8 6 3.9704 -3.6225 3.0639 9 8 4.3339 -4.2090 2.0630 10 7 4.2138 -4.1500 4.2800 11 6 5.0123 -5.3722 4.4018 12 6 5.0332 -5.8241 5.8634 13 6 3.6827 -6.0040 6.5075 14 1 3.5435 -5.7541 7.5489 15 6 2.6233 -6.4823 5.7658 16 7 2.7692 -6.7030 4.4775 17 14 0.9811 -6.8169 6.5908 18 1 0.1425 -5.5924 6.5388 19 1 0.2875 -7.9224 5.8823 20 1 1.2079 -7.2018 8.0070 21 6 6.1529 -6.7740 6.2932 22 6 6.1737 -5.3117 6.7451 23 6 2.9386 -1.6032 4.0942 24 6 2.2780 -0.3991 3.9795 25 6 1.9346 0.0897 2.7281 26 9 1.2875 1.2708 2.6213 27 1 -0.3634 0.6380 0.8056 28 1 -0.3634 0.3787 -0.9553 29 1 -0.3633 -1.0167 0.1497 30 1 3.1702 -2.3890 0.7989 31 1 3.8602 -3.7204 5.0746 32 1 6.0309 -5.1754 4.0678 33 1 4.5728 -6.1563 3.7853 34 1 2.0059 -6.9699 3.9417 35 1 5.9129 -7.5291 7.0418 36 1 6.8750 -7.0767 5.5348 37 1 6.9095 -4.6529 6.2837 38 1 5.9472 -5.1043 7.7910 39 1 3.2059 -1.9828 5.0693 40 1 2.0278 0.1650 4.8658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791052797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:54 Heat of formation + Delta-G solvation = -109.618030 kcal Electronic energy + Delta-G solvation = -27475.880032 eV Core-core repulsion = 23298.072094 eV Total energy + Delta-G solvation = -4177.807938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.43970 -41.19030 -39.39363 -38.33208 -38.21456 -37.10657 -34.97830 -34.13900 -32.68869 -32.06331 -30.39448 -27.96861 -27.28592 -24.96484 -24.40378 -22.96646 -21.78450 -21.15130 -20.19305 -19.45316 -18.71749 -18.21674 -17.97300 -17.40230 -17.16471 -16.86599 -16.75066 -16.65451 -16.29239 -15.95193 -15.58873 -15.32344 -14.84966 -14.67101 -14.38831 -14.24330 -14.03190 -13.98181 -13.77847 -13.49377 -13.33382 -13.23274 -13.17377 -13.06797 -12.88396 -12.58881 -12.28300 -12.14661 -12.02465 -11.84225 -11.57601 -11.00319 -10.82717 -10.75688 -10.65170 -10.18551 -10.13653 -9.65506 -7.92713 -6.19417 -1.03766 -0.69497 -0.28175 1.41501 1.48572 1.55013 1.55446 1.70408 2.30651 2.41980 2.53252 2.66912 2.79075 3.05126 3.12546 3.45693 3.61550 3.73828 3.79727 3.93047 4.03143 4.19755 4.26323 4.32118 4.50332 4.55099 4.60745 4.73416 4.80437 4.82098 4.87760 4.96241 4.97904 5.14768 5.31177 5.43145 5.54203 5.61763 5.81862 6.00169 6.37829 6.75584 6.91318 7.42789 7.46777 8.92859 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015501 B = 0.003242 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.948917 B = 8635.043739 C = 9018.252043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.621 4.621 2 S 2.499 3.501 3 O -0.962 6.962 4 O -0.969 6.969 5 C -0.706 4.706 6 C 0.041 3.959 7 C -0.166 4.166 8 C 0.542 3.458 9 O -0.593 6.593 10 N -0.666 5.666 11 C 0.173 3.827 12 C 0.008 3.992 13 C -0.503 4.503 14 H 0.061 0.939 15 C 0.036 3.964 16 N -0.890 5.890 17 Si 0.947 3.053 18 H -0.270 1.270 19 H -0.296 1.296 20 H -0.271 1.271 21 C -0.202 4.202 22 C -0.184 4.184 23 C -0.003 4.003 24 C -0.159 4.159 25 C 0.203 3.797 26 F -0.113 7.113 27 H 0.154 0.846 28 H 0.165 0.835 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.405 0.595 32 H 0.019 0.981 33 H 0.082 0.918 34 H 0.256 0.744 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.168 0.832 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.463 16.006 -1.856 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.776 4.776 2 S 2.680 3.320 3 O -0.959 6.959 4 O -0.966 6.966 5 C -0.790 4.790 6 C 0.021 3.979 7 C -0.170 4.170 8 C 0.329 3.671 9 O -0.477 6.477 10 N -0.313 5.313 11 C 0.049 3.951 12 C 0.007 3.993 13 C -0.540 4.540 14 H 0.080 0.920 15 C -0.165 4.165 16 N -0.527 5.527 17 Si 0.774 3.226 18 H -0.195 1.195 19 H -0.223 1.223 20 H -0.196 1.196 21 C -0.241 4.241 22 C -0.221 4.221 23 C -0.021 4.021 24 C -0.178 4.178 25 C 0.182 3.818 26 F -0.091 7.091 27 H 0.172 0.828 28 H 0.183 0.817 29 H 0.173 0.827 30 H 0.165 0.835 31 H 0.242 0.758 32 H 0.037 0.963 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.185 0.815 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -6.671 15.732 -3.268 17.397 hybrid contribution -1.130 -0.741 1.215 1.817 sum -7.801 14.991 -2.053 17.024 Atomic orbital electron populations 1.30034 1.18267 1.14507 1.14768 1.05280 0.80689 0.73290 0.72781 1.93570 1.79708 1.36943 1.85674 1.93566 1.79941 1.62207 1.60917 1.30655 1.19100 1.07410 1.21816 1.20862 0.87669 0.91010 0.98313 1.20226 1.04956 0.96450 0.95379 1.18416 0.79692 0.85232 0.83765 1.90710 1.55516 1.63644 1.37799 1.45420 1.51994 1.26643 1.07238 1.20813 0.90268 0.86836 0.97169 1.19265 0.89749 0.99129 0.91118 1.20699 0.93230 1.43523 0.96579 0.92050 1.25586 1.01539 0.94318 0.95100 1.70059 1.30511 1.46094 1.06038 0.85724 0.80460 0.77881 0.78585 1.19529 1.22278 1.19575 1.22967 1.04390 0.93128 1.03626 1.22965 1.02950 0.95998 1.00172 1.21821 0.89715 0.91905 0.98704 1.21537 1.01392 0.97429 0.97404 1.17327 0.90337 0.80347 0.93813 1.91610 1.77621 1.43011 1.96858 0.82775 0.81675 0.82743 0.83482 0.75798 0.96254 0.89984 0.93416 0.90488 0.90781 0.89650 0.89493 0.81492 0.79177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -5.56 10.79 113.37 1.22 -4.34 16 2 S 2.50 52.29 5.44 -56.49 -0.31 51.98 16 3 O -0.96 -25.47 17.34 -127.65 -2.21 -27.69 16 4 O -0.97 -27.89 16.73 -127.65 -2.14 -30.02 16 5 C -0.71 -17.09 5.58 22.27 0.12 -16.96 16 6 C 0.04 1.27 9.04 22.51 0.20 1.47 16 7 C -0.17 -5.33 5.87 -20.09 -0.12 -5.45 16 8 C 0.54 22.46 7.76 86.75 0.67 23.13 16 9 O -0.59 -29.61 16.33 -3.95 -0.06 -29.67 16 10 N -0.67 -27.02 4.96 -466.10 -2.31 -29.33 16 11 C 0.17 7.94 4.62 86.38 0.40 8.34 16 12 C 0.01 0.35 2.04 -52.93 -0.11 0.25 16 13 C -0.50 -23.78 8.44 25.60 0.22 -23.56 16 14 H 0.06 2.85 7.82 -2.91 -0.02 2.83 16 15 C 0.04 1.77 5.31 84.65 0.45 2.21 16 16 N -0.89 -46.65 10.11 21.45 0.22 -46.43 16 17 Si 0.95 39.14 29.54 68.60 2.03 41.17 16 18 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 19 H -0.30 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 C -0.20 -8.28 9.96 30.62 0.30 -7.97 16 22 C -0.18 -6.80 9.92 30.62 0.30 -6.50 16 23 C 0.00 -0.07 9.51 22.52 0.21 0.15 16 24 C -0.16 -2.89 10.01 22.27 0.22 -2.67 16 25 C 0.20 4.17 7.19 22.47 0.16 4.33 16 26 F -0.11 -2.02 15.71 44.97 0.71 -1.32 16 27 H 0.15 0.87 7.58 -2.39 -0.02 0.86 16 28 H 0.17 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.15 5.06 6.80 -2.91 -0.02 5.04 16 31 H 0.41 14.51 6.21 -92.71 -0.58 13.93 16 32 H 0.02 0.87 8.09 -2.39 -0.02 0.85 16 33 H 0.08 4.47 5.89 -2.39 -0.01 4.45 16 34 H 0.26 13.36 8.32 -92.71 -0.77 12.59 16 35 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 38 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.17 3.24 6.47 -2.91 -0.02 3.22 16 40 H 0.19 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -72.59 357.62 0.71 -71.88 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.52 Total: 27.01 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 4.27 Total: -27.57 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -2.10 Total: -75.77 kcal Atomic # 8 Polarization: -82.97 SS G_CDS: -4.41 Total: -87.38 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.71 Total: -1.32 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Atomic # 16 Polarization: 52.29 SS G_CDS: -0.31 Total: 51.98 kcal Total: -72.59 0.71 -71.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791052797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.733 kcal (2) G-P(sol) polarization free energy of solvation -72.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds